Properties and growth mechanism of the ordered aggregation of a model RNA by the HIV-1 nucleocapsid protein: An electron microscopy investigation

Biopolymers

Volumn 45, Issue 3, 1998, Pages 217-229

  Cam, Eric Le ^a   Coulaud, Dominique ^a   Delain, Etienne ^a   Petitjean, Patrice ^b   Roques, Bernard P ^b   Gérard, Dominique ^c   Stoylova, Elena ^c,d   Vuilleumier, Constance ^c   Stoylov, Stoyl P ^d   Mély, Yves ^c  

^a INSTITUT GUSTAVE ROUSSY   (France)

^b Laboratoire de Pharmacochimie   (France)

^c UNIVERSITÉ DE STRASBOURG   (France)

^d BULGARIAN ACADEMY OF SCIENCES   (Bulgaria)

Author keywords

Aggregation dependence; Electron microscopy; Mechanism of aggregate growth; NCp7 induced polyA aggregation; Nucleotide to protein ratio; Polya NCp7 interaction; Protein concentration; Salt concentration

Indexed keywords

AGGLOMERATION; COMPOSITION EFFECTS; DISSOCIATION; ELECTRON MICROSCOPY; MORPHOLOGY; RNA; SALTS; VIRUSES;

HUMAN IMMUNODEFICIENCY VIRUS (HIV); NUCLEOCAPSID PROTEIN;

PROTEINS;

CAPSID PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ELECTRON MICROSCOPY; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; RNA ANALYSIS; RNA PROCESSING; STRUCTURE ANALYSIS; VIRUS CAPSID;

BINDING SITES; CAPSID; CAPSID PROTEINS; GENE PRODUCTS, GAG; HIV-1; MICROSCOPY, ELECTRON; MOLECULAR WEIGHT; PARTICLE SIZE; POLY A; RNA; VIRAL PROTEINS; ZINC FINGERS;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; MIRIDAE; RNA VIRUSES;

EID: 0032032070     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-0282(199803)45:3<217::aid-bip4>3.0.co;2-u     Document Type: Article

References (42)

1. Omichinski, J. G., Clore, G. M., Sakaguchi, K., Appella, E. & Gronenborn, A. M. (1991) FEBS Lett. 292, 25-30.
2. Morellet, N., Jullian, N., De Rocquigny, H., Maigret, B., Darlix, J. L. & Roques, B. P. (1992) EMBO J. 11, 3059-3065.
3. Summers, M. F., Henderson, L. E., Chance, M. R., Bess, J. W., Jr, South, T. L., Blake, P. R., Sagi, I., Perez-Alvarado, G., Sowder, R. C., III, Hare, D. R. & Arthur, L. O. (1992) Protein Sci. 1, 563-574.
4. Mély, Y., De Rocquigny, H., Morellet, N., Roques, B. P. & Gérard, D. (1996) Biochemistry 35, 5175-5182.
5. Bess, J. W., Jr, Powell, P. J., Issaq, H. J., Schumack, L. J., Grimes, M. K., Henderson, L. E. & Arthur, L. O. (1992) J. Virol. 66, 840-847.
6. Berkowitz, R. D., Luban, J. & Goff, S. P. (1993) J. Virol. 67, 7190-7200.
7. Berkowitz, R. D. & Goff, S. P. (1994) Virology 202, 233-246.
8. Clever, J., Sassetti, C. & Parslow, T. G. (1995) J. Virol. 69, 2101-2109.
9. Darlix, J. L., Gabus, C., Nugeyre, M. T., Clavel, F. & Barré-Sinoussi, F. (1990) J. Mol. Biol. 216, 689-699.
10. Tanchou, V., Gabus, C., Rogemond, V. & Darlix, J. L. (1995) J. Mol. Biol. 252, 563-571.
11. Barat, C., Lullien, V., Schatz, O., Keith, G., Nugeyre, M. T., Grüninger-Leitch, F., Barré-Sinoussi, F., Le Grice, S. F. J. & Darlix, J. L. (1989) EMBO J. 8, 3279-3285.
12. Lapadat-Tapolsky, M., De Rocquigny, H., Van Gent, D., Roques, B., Plasterk, R. & Darlix, J. L. (1993) Nucleic Acids Res. 21, 831-839.
13. Dib-Hajj, F., Khan, R. & Giedroc, D. P. (1993) Protein Sci. 2, 231-243.
14. Tsuchihashi, Z. & Brown, P. O. (1994) J. Virol. 68, 5863-5870.
15. Al-Ghusein, H., Ball, H., Tglor, G. L., Gbewonyo, A., Coates, A. R. M., Mascagni, P. & Roberts, M. M. (1996) Biochem. Biophys. Res. Commun. 224, 191-198.
16. Mély, Y., De Rocquigny, H., Sorinas-Jimeno, M., Keith, G., Roques, B. P., Marquet, R. & Gérard, D. (1995) J. Biol. Chem. 270, 1650-1656.
17. Stoylov, S. P., Vuilleumier, C., Stoylova, E., De Rocquigny, H., Roques, B. P., Gérard, D. & Mély, Y. (1997) Biopolymers 41, 301-312.
18. De Rocquigny, H., Ficheux, D., Gabus, C., Fournié-Zaluski, M. C., Darlix, J. L. & Roques, B. P. (1991) Biochem. Biophys. Res. Commun. 180, 1010-1018.
19. Delain, E. & Le Cam, E. (1995) in Visualization of Nucleic Acids, Morel, G., Ed., CRC Press Boca Raton, London, Tokyo, pp. 35-56.
20. Le Cam, E. & Delain, E. (1995) in Visualization of Nucleic Acids, Morel, G., Ed., CRC Press Boca Raton, London, Tokyo, pp. 331-356.
21. Dubochet, J., Ducommun, M., Zollinger, M. & Kellenberger, E. (1971) J. Ultrastruct. Res. 35, 147-167.
22. Dubochet, J. (1973) in Principles and Techniques of Electron Microscopy, Biological Applications, Vol. 3, Hayat, M. A., Ed., Van Nostrand Reinhold, New York, pp. 113-151.
23. Delain, E., Fourcade, A., Revet, B. & Mory, C. (1992) Microsc. Microanal Microstruct. 3, 175-186.
24. Khan, R. & Giedroc, D. P. (1994) J. Biol. Chem. 269, 22538-22546.
25. Bremmer, A., Hann, C., Engel, A., Baumeister, W. & Aebi, A. (1992) Ultramicroscopy 46, 85-111.
26. Brack, C. (1981) CRC Crit. Rev. Biochem. 10, 113-169.
27. Harris, R. & Horne, R. (1991) in Electron Micros-copy in Biology, Harris, R., Ed., IRL Press pp. 203-228.
28. Chrysogelos, S. & Griffith, J. (1982) Proc. Natl. Acad. Sci. USA 79, 5803-5807.
29. Delius, H., Mantell, N. J. & Alberts, B. (1972) J. Mol. Biol. 67, 341-350.
30. Alberts, B., Frey, L. & Delius, H. (1972) J. Mol. Biol. 68, 139-152.
31. Olah, G. A., Gray, D. M., Gray, C. W., Kergil, D. L., Sosnick, T. R., Mark, B. L., Vaughan, M. R. & Trewhella, J. (1995) J. Mol. Biol. 249, 576-594.
32. Langlais, M., Tajmir-Riahi, H. A. & Savoie, R. (1990) Biopolymers 30, 743-752.
33. Laing, L. G., Gluick, T. C. & Draper, D. E. (1994) J. Mol. Biol. 237, 577-587.
34. Chernov, A. (1984) in Modern Crystallography III, Vol. 36, Springer, New York, pp. 288-295.
35. Wilson, R. W. & Bloomfield, V. A. (1979) Biochemistry 18, 2192-2196.
36. Khan, R. & Giedroc, D. P. (1992) J. Biol. Chem. 267, 6689-6695.
37. Sikorav, J. L. & Church, G. M. (1991) J. Mol. Biol. 222, 1085-1108.
38. Prats, A. C., Housset, V., Debilly, G., Cornilie, F., Trats, H., Roques, B. & Darlix, J. L. (1991) Nucleic Acids Res. 19, 3533-3541.
39. Garcia-Ramirez, M. & Subirana, J. A. (1994) Biopolymers 34, 285-292.
40. Chattoraj, D. K., Gosule L. G. & Schellman, J. A. (1978) J. Mol. Biol. 121, 327-337.
41. Arscott, P. G., Li, A. Z. & Bloomfield, V. A. (1990) Biopolymers 30, 619-630.
42. Bloomfield, V. A. (1991) Biopolymers 31, 1471-1481.