Defining a genetic ideotype for crop improvement

Methods in Molecular Biology

Volumn 1145, Issue , 2014, Pages

  Trethowan, Richard M ^a  

^a NONE

Author keywords

Crop improvement; Cross prediction; Gene effects; Gene environment interaction; Genotype environment interaction; Ideotype

Indexed keywords

ADAPTATION; ALLELE; ARTICLE; COLEOPTILE; COST; CROP IMPROVEMENT; CULTIVAR; DROUGHT TOLERANCE; GENE LINKAGE DISEQUILIBRIUM; GENETIC GAIN; GENETIC IDEOTYPE; GENETIC VARIABILITY; GENOTYPE; GENOTYPE ENVIRONMENT INTERACTION; GERMPLASM; GRAIN; GRAIN YIELD; HARVEST INDEX; HEAT TOLERANCE; HEREDITY; HYBRID SEED PRODUCTION; INFORMATION SCIENCE; INHERITANCE; NONHUMAN; PEDIGREE; PHENOTYPE; PLANT BREEDING; PLANT CHROMOSOME; PLANT GENETICS; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; RECURRENT SELECTION; SEED PRODUCTION; VERNALIZATION; WATER STRESS;

EID: 84941001379     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-0446-4_1     Document Type: Article

References (65)

1. Donald CM (1968) The breeding of crop ideotypes. Euphytica 17:385-403
2. Hodson DP, White JW (2007) Use of spatial analyses for global characterization of wheatbased production systems. J Agric Sci 145: 115-125
3. Eagles HA, Cane K, Kuchel H, Hollamby GJ, Vallance N, Eastwood RF, Gororo NN, Martin PJ (2010) Photoperiod and vernalization gene effects in southern Australian wheat. Crop Pasture Sci 61:721-730
4. Crossa J, Burgueño J, Dreisigacker S, Vargas M, Herrera-Foessel S, Lillemo M, Singh RP, Trethowan R, Warburton M, Franco J, Crouch JH, Ortiz R (2007) Association analysis of historical bread wheat germplasm using additive genetic covariance of relatives and population structure. Genetics 177:1889-1913
5. Rajaram S, van Ginkel M, Fischer RA (1994) CIMMYT’s wheat breeding mega-environments (ME). In: Li, Z.S. and Xin, Z.Y. Eds. Proceedings of the 8th International Wheat Genetics Symposium, 19-24 July 1993, Beijing, China. China Agricultural Scientech Press, pp 1101-1106
6. Braun HJ, Rajaram S, Van Ginkel M (1996) CIMMYT’s approach to breeding for wide adaptation. Euphytica 92:175-183
7. Hodson DP, Cressman K, Nazari K, Park RF, Yahyaoui A (2009) The global cereal rust monitoring system. In: McIntosh R (ed) Proceedings of the Technical Workshop, Borlaug Global Rust Initiative, Cd. Obregon, Sonora, Mexico, 17-20 March, 2009, pp 35-46
8. Manandhar R, Odeh IOA, Pontius RG (2010) Analysis of twenty years of categorical land transitions in the lower Hunter of New South Wales, Australia. Agric Ecosyst Environ 135:336-346
9. Nelson MA, Odeh IOA, Bishop TFA, Weber N (2010) Quantifying the uncertainty in digital soil class maps developed using model-based approaches. In: Gilkes RJ, Prakonkep N (eds) Proceedings 19th World Congress of Soil Science: Soil solutions for a changing world, Brisbane, Australia. Working Group 1.3 Digital soil assessment pp 42-45
10. Comstock RE (1977) Quantitative genetics and the design of breeding programs. In: Pollack E, Kempthorne O, Bailey B (eds) Proceedings of the international conference on quantitative genetics. Iowa State University Press, Ames, IA, pp 705-718
11. Chenu K, Cooper M, Hammer GL, Mathews KL, Dreccer MF, Chapman SC (2011) Environment characterization as an aid to wheat improvement: interpreting genotype-environment interactions by modelling water-deficit patterns in North-Eastern Australia. J Exp Bot 62:1743-1755
12. Reynolds MP, Trethowan RM (2007) Physiological interventions in breeding for adaptation to abiotic stress, 2007. In: Spiertz JHJ, Struik PC, Van Laar HH (eds) Scale and complexity in plant systems research, gene-plant-crop relations. Springer, The Netherlands, pp 129-146
13. Lopez-Castaneda C, Richards RA, Farquhar GD, Williamson RE (1996) Seed and seedling characteristics contributing to variation in early vigor among temperate cereals. Crop Sci 36: 1257-1266
14. Trethowan RM, Singh RP, Huerta-Espino J, Crossa J, van Ginkel M (2001) Coleoptile length variation of near isogenic Rht lines of modern CIMMYT bread and durum wheat. Field Crop Res 70:167-176
15. Rebetzke GJ, Richards RA, Sirault XRR, Morrison AD (2004) Genetic analysis of coleoptile length and diameter in wheat. Aust J Agric Res 55:733-743
16. Richards RA, Lukacs Z (2002) Seedling vigour in wheat—sources of variation for genetic and agronomic improvement. Aust J Agric Res 53: 41-50
17. GangPing X, McIntyre CL, Jenkins CLD, Glassop D, van Herwaarden AF, Shorter R (2008) Molecular dissection of variation in carbohydrate metabolism related to water-soluble carbohydrate accumulation in stems of wheat. Plant Physiol 146:441-454
18. Nik MM, Babaeian M, Tavassoli A (2011) Effect of seed size and genotype on germination characteristic and seed nutrient content of wheat. Sci Res Essays 6:2019-2025
19. Amani I, Fischer RA, Reynolds MP (1996) Canopy temperature depression associated with yield of irrigated spring wheat cultivars in a hot climate. J Agron Crop Sci 176:119-129
20. Tausz-Posch S, Seneweera S, Norton RM, Fitzgerald GJ, Tausz M (2012) Can a wheat cultivar with high transpiration efficiency maintain its yield advantage over a near-isogenic cultivar under elevated CO 2 ? Field Crop Res 133: 160-166
21. Damon PM, Ma QF, Rengel Z (2011) Wheat genotypes differ in potassium accumulation and osmotic adjustment under drought stress. Crop Pasture Sci 62:550-555
22. Majdi M, Kamali MRJ, Moghaddam ME, Asli DE, Moradi F, Tahmasbi S (2011) Variation in some agronomic characteristics and soluble stem carbohydrate content at anthesis in spring wheat genotypes under terminal drought stress conditions. Iranian J Crop Sci 13:299-309
23. Izzi G, Farahani HJ, Bruggeman AMD, Oweis TY (2008) In-season wheat root growth and soil water extraction in the Mediterranean environment of northern Syria. Agric Water Manag 95:259-270
24. Dreccer MF, van Herwaarden AF, Chapman SC (2009) Grain number and grain weight in wheat lines contrasting for stem water soluble carbohydrate concentration. Field Crop Res 112:43-54
25. Siahpoosh MR, Dehghanian E (2012) Water use efficiency, transpiration efficiency, and uptake efficiency of wheat during drought. Agron J 104:1238-1243
26. Luo PG, Zhang HY, Shu K, Wu XH, Zhang HQ, Ren ZL (2009) The physiological genetic effects of 1BL/1RS translocated chromosomein “stay green” wheat cultivar CN 17. Can J Plant Sci 89:1-10
27. Duggan BL, Richards RA, van Herwaarden AF, Fettell NA (2005) Agronomic evaluation of a tiller inhibition gene (tin) in wheat. I. Effect on yield, yield components, and grain protein. Aust J Agric Res 56:169-178
28. Ibrahim SE, Schubert A, Pillen K, Leon J (2012) QTL analysis of drought tolerance for seedling root morphological traits in an advanced backcross population of spring wheat. Int J Agric Sci 2:619-629
29. Spielmeyer W, Hyles J, Joaquim P, Azanza F, Bonnett D, Ellis ME, Moore C, Richards RA (2007) A QTL on chromosome 6A in bread wheat (Triticum aestivum) is associated with longer coleoptiles, greater seedling vigour and final plant height. Theor Appl Genet 115:59-66
30. Liu X-L, Chang X-P, Li R-Z, Jing R-L (2011) Mapping QTLs for seminal root architecture and coleoptile length in wheat. Acta Agron Sin 37:381-388
31. McIntyre CL, Seung D, Casu RE, Rebetzke GJ, Shorter R, Xue GP (2012) Genotypic variation in the accumulation of water soluble carbohydrates in wheat. Funct Plant Biol 39:560-568
32. Snape JW, Foulkes MJ, Simmonds J, Leverington M, Fish LJ, Wang YK, Ciavarrella M (2007) Dissecting gene * environmental effects on wheat yields via QTL and physiological analysis. Euphytica 154:401-408
33. Rebetzke GJ, Condon AG, Farquhar GD, Appels R, Richards RA (2008) Quantitative trait loci for carbon isotope discrimination are repeatable across environments and wheat mapping populations. Theor Appl Genet 118: 123-137
34. Ciuca M, Banica C, David M, Saulescu NN (2010) SSR markers associated with the capacity for osmotic adjustment in wheat (Triticum aestivum L.). Romanian Agric Res 27:1-5
35. Alexander LM, Kirigwi FM, Fritz AK, Fellers JP (2012) Mapping and quantitative trait loci analysis of drought tolerance in a spring wheat population using amplified fragment length polymorphism and diversity array technology markers. Crop Sci 52:253-261
36. Naruoka Y, Sherman JD, Lanning SP, Blake NK, Martin JM, Talbert LE (2012) Genetic analysis of green leaf duration in spring wheat. Crop Sci 52:99-109
37. Paliwal R, Roder MS, Uttam K, Srivastava JP, Joshi AK (2012) QTL mapping of terminal heat tolerance in hexaploid wheat (T. aestivum L.). Theor Appl Genet 125:561-575
38. Nezhad KZ, Weber WE, Roder MS, Sharma S, Lohwasser U, Meyer RC, Saal B, Borner A (2012) QTL analysis for thousand-grain weight under terminal drought stress in bread wheat (Triticum aestivum L.). Euphytica 186: 127-138
39. Kumar S, Sharma V, Chaudhary S, Tyagi A, Mishra P, Priyadarshini A, Singh A (2012) Genetics of flowering time in bread wheat Triticum aestivum: complementary interaction between vernalization-insensitive and photoperiod-insensitive mutations imparts very early flowering habit to spring wheat. J Genet 91:33-47
40. Mathews KL, Chapman SC, Trethowan RM, Singh R, Crossa J, Pfeiffer WH, van-Ginkel M, DeLacy I (2006) Global adaptation of spring bread and durum wheat lines near-isogenic for major reduced height genes. Crop Sci 46: 603-613
41. Ellis MH, Rebetzke GJ, Azanza F, Richards RA, Spielmeyer W (2005) Molecular mapping of gibberellin-responsive dwarfing genes in bread wheat. Theor Appl Genet 111:423-430
42. Trethowan RM, Crossa J, Pfeiffer WH (2005) Management of genotype × environment interactions and their implications for durum wheat breeding. In: Royo C, Nachit MM, di Fonzo N, Araus JL, Pfeiffer WH, Slafer GA (eds) Durum wheat breeding: current approaches and future strategies. The Harworth Press, Inc., New York, NY, pp 777-802
43. Trethowan RM, Crossa J, van Ginkel M, Rajaram S (2001) Relationships among bread wheat international yield testing locations in dry areas. Crop Sci 41:1461-1469
44. Trethowan RM, van Ginkel M, Ammar K, Crossa J, Payne TS, Cukadar B, Rajaram S, Hernandez E (2003) Associations among twenty years of bread wheat yield evaluation environments. Crop Sci 43:1698-1711
45. Lillemo M, van Ginkel M, Trethowan RM, Hernandez E, Rajaram S (2004) Associations among international CIMMYT bread wheat yield testing locations in high rainfall areas and their implications for wheat breeding. Crop Sci 44:1163-1169
46. Lillemo M, van Ginkel M, Trethowan RM, Hernandez E, Crossa J (2005) Differential adaptation of CIMMYT bread wheat to global high temperature environments. Crop Sci 45:2443-2453
47. Trethowan RM, Crossa J (2007) Lessons learnt from forty years of international bread wheat trials. Euphytica 157:385-390
48. Manès Y, Gomez H, Puhl L, Reynolds M, Trethowan RM (2012) Genetic yield grains of the CIMMYT international semi-arid wheat yield trials from 1994 to 2010. Crop Sci 52:1543-1552
49. Cooper M, Fox PN (1996) Environmental characterization based on probe and reference genotypes. In: Hammer GL, Cooper M (eds) Plant adaptation and crop improvement. CAB International in association with IRRI and ICRISAT, Wallingford, pp 529-547
50. Mathews KL, Trethowan RM, Milgate A, Payne T, van Ginkel M, Crossa J, DeLacy I, Cooper M, Chapman SC (2011) Indirect selection using reference and probe genotype performance in multi-environment trials. Crop Pasture Sci 62:313-327
51. Trethowan RM, Matthews K, Chapman S, Manes Y, Nicol J (2010) An international perspective on breeding for resistance to soil borne pathogens. In: Stirling GR (ed) Proceedings sixth Australian soilborne diseases symposium. APPS, Toowoomba
52. Vanderplank JE (1963) Plant diseases: epidemics and control. Academic, New York, p 349
53. Sayre KD, Singh RP, Huerta-Espino J, Rajaram S (1998) Genetic progress in reducing losses to leaf rust in CIMMYT-derived Mexican spring wheat cultivars. Crop Sci 38:654-659
54. Eagles HA, Cane K, Vallance N (2009) The flow of alleles of important photoperiod and vernalisation genes through Australian wheat. Crop Pasture Sci 60:646-657
55. Eagles HA, Cane K, Eastwood RF, Hollamby GJ, Kuchel H, Martin PJ, Cornish GB (2006) Contributions of glutenin and puroindoline genes to grain quality traits in southern Australian wheat breeding programs. Aust J Agric Res 57:179-186
56. Gupta PK, Rustgi S, Kulwal PL (2005) Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol Biol 57:461-485
57. Charmet G, Robert N, Perretant MR, Gay G, Sourdille P, Groos C, Bernard S, Bernard M (1999) Marker-assisted recurrent selection for cumulating additive and interactive QTLs in recombinant inbred lines. Theor Appl Genet 99:1143-1148
58. Cavanagh C, Morell M, Mackay I, Powell W (2008) From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. Curr Opin Plant Biol 11:215-221
59. Paux E, Sourdille P, Mackay I, Feuillet C (2012) Sequence-based marker development in wheat: advances and applications to breeding. Biotechnol Adv 30:1071-1088
60. Kuan JZ, Wang SH, Feng YQ, Liu ZX, Wang GX (2006) The 4E-ms system of producing hybrid wheat. Crop Sci 46:250-255
61. DeLacy IH, Fox PN, McLaren G, Trethowan RM, White JW (2009) A conceptual model for describing processes of crop improvement in database structures. Crop Sci 49:2100-2112
62. Moud AAM, Yamagishi T (2006) Differences between water extraction patterns of three wheat (Triticum aestivum L.) cultivars at different soil depths under gradually downward soil drying conditions. J Agric Sci Technol 8:271-279
63. Liu X, Chang X, Li R-Z, Jing R (2011) Mapping QTLs for seminal root architecture and coleoptile length in wheat. Acta Agron Sin 37:381-388
64. Ribaut J-M, de Vicente MC, Delannay X (2010) Molecular breeding in developing countries: challenges and perspectives. Curr Opin plant Biol 13:1-6
65. Delannay X, McLaren G, Ribaut J-M (2012) Fostering molecular breeding in developing countries. Mol Breed 29:857-873