SCOPUS 정보 검색 플랫폼

Applied and Environmental Microbiology

Volumn 81, Issue 19, 2015, Pages 6688-6699

Small RNA transcriptome of the oral microbiome during periodontitis progression

(3) Duran Pinedo, Ana E a Yost, Susan a Frias Lopez, Jorge a,b

a FORSYTH INSTITUTE (United States)

b HARVARD SCHOOL OF DENTAL MEDICINE (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASES; GENES; METABOLISM; MICROORGANISMS; NUCLEIC ACIDS; PHYSIOLOGY; PROTEINS;

AMINO ACID METABOLISM; CARBOHYDRATE METABOLISM; DIFFERENTIAL EXPRESSIONS; FUNCTIONAL ACTIVITIES; MICROBIAL COMMUNITIES; POST-TRANSCRIPTIONAL REGULATIONS; PROTEIN-CODING TRANSCRIPTS; SIGNAL RECOGNITION PARTICLES;

GENE EXPRESSION;

AMINO ACID; CATABOLISM; DENTAL HEALTH; GENE EXPRESSION; MICROBIAL COMMUNITY; PLASMID; PROTEIN; RNA;

BACTERIAL RNA; SMALL UNTRANSLATED RNA; TRANSCRIPTOME;

BACTERIUM; CLASSIFICATION; CLINICAL TRIAL; DISEASE COURSE; DYSBIOSIS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MICROFLORA; MOLECULAR GENETICS; MOUTH; MULTICENTER STUDY; PATHOLOGY; PERIODONTITIS; PHYLOGENY;

BACTERIA; DISEASE PROGRESSION; DYSBIOSIS; HUMANS; MICROBIOTA; MOLECULAR SEQUENCE DATA; MOUTH; PERIODONTITIS; PHYLOGENY; RNA, BACTERIAL; RNA, SMALL UNTRANSLATED; TRANSCRIPTOME;

EID: 84940774339 PISSN: 00992240 EISSN: 10985336 Source Type: Journal
DOI: 10.1128/AEM.01782-15 Document Type: Article

Times cited : (26)

References (74)

1
- 84922936021
- Genomewide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions
- Tsai C-H, Liao R, Chou B, Palumbo M, Contreras LM. 2015. Genomewide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions. J Bacteriol 197:40-50. http://dx.doi.org/10.1128/JB.02359-14.
- (2015) J Bacteriol , vol.197 , pp. 40-50
- Tsai, C.-H.¹ Liao, R.² Chou, B.³ Palumbo, M.⁴ Contreras, L.M.⁵

2
- 84872855335
- New insights into small RNA-dependent translational regulation in prokaryotes
- Desnoyers G, Bouchard M-P, Massé E. 2013. New insights into small RNA-dependent translational regulation in prokaryotes. Trends Genet Trends Genet 29:92-98. http://dx.doi.org/10.1016/j.tig.2012.10.004.
- (2013) Trends Genet Trends Genet , vol.29 , pp. 92-98
- Desnoyers, G.¹ Bouchard, M.-P.² Massé, E.³

3
- 34247567492
- An antisense RNA inhibits translation by competing with standby ribosomes
- Darfeuille F, Unoson C, Vogel J, Wagner EGH. 2007. An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell 26: 381-392. http://dx.doi.org/10.1016/j.molcel.2007.04.003.
- (2007) Mol Cell , vol.26 , pp. 381-392
- Darfeuille, F.¹ Unoson, C.² Vogel, J.³ Wagner, E.G.H.⁴

4
- 33847386673
- Translational control and target recognition by Escherichia coli small RNAs in vivo
- Urban JH, Vogel J. 2007. Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res 35:1018-1037. http://dx.doi.org/10.1093/nar/gkl1040.
- (2007) Nucleic Acids Res , vol.35 , pp. 1018-1037
- Urban, J.H.¹ Vogel, J.²

5
- 71549126189
- Activation of gene expression by small RNA
- Fröhlich KS, Vogel J. 2009. Activation of gene expression by small RNA. Curr Opin Microbiol 12:674-682. http://dx.doi.org/10.1016/j.mib.2009.09.009.
- (2009) Curr Opin Microbiol , vol.12 , pp. 674-682
- Fröhlich, K.S.¹ Vogel, J.²

6
- 77953753696
- Small RNA-mediated regulation at the level of transcript stability
- Caron M-P, Lafontaine DA, Massé E. 2010. Small RNA-mediated regulation at the level of transcript stability. RNA Biol 7:140-144. http://dx.doi.org/10.4161/rna.7.2.11056.
- (2010) RNA Biol , vol.7 , pp. 140-144
- Caron, M.-P.¹ Lafontaine, D.A.² Massé, E.³

7
- 60149089144
- Regulatory RNAs in bacteria
- Waters LS, Storz G. 2009. Regulatory RNAs in bacteria. Cell 136:615-628. http://dx.doi.org/10.1016/j.cell.2009.01.043.
- (2009) Cell , vol.136 , pp. 615-628
- Waters, L.S.¹ Storz, G.²

8
- 57249116905
- Small RNA gene identification and mRNA target predictions in bacteria
- Pichon C, Felden B. 2008. Small RNA gene identification and mRNA target predictions in bacteria. Bioinforma Oxf Engl 24:2807-2813. http://dx.doi.org/10.1093/bioinformatics/btn560.
- (2008) Bioinforma Oxf Engl , vol.24 , pp. 2807-2813
- Pichon, C.¹ Felden, B.²

9
- 85011941303
- Computational prediction of sRNAs and their targets in bacteria
- Backofen R, Hess WR. 2010. Computational prediction of sRNAs and their targets in bacteria. RNA Biol 7:33-42. http://dx.doi.org/10.4161/rna.7.1.10655.
- (2010) RNA Biol , vol.7 , pp. 33-42
- Backofen, R.¹ Hess, W.R.²

10
- 84883772639
- Comparative genomics boosts target prediction for bacterial small RNAs
- Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J. 2013. Comparative genomics boosts target prediction for bacterial small RNAs. Proc Natl Acad Sci USA 110:E3487-E3496. http://dx.doi.org/10.1073/pnas.1303248110.
- (2013) Proc Natl Acad Sci USA , vol.110 , pp. E3487-E3496
- Wright, P.R.¹ Richter, A.S.² Papenfort, K.³ Mann, M.⁴ Vogel, J.⁵ Hess, W.R.⁶ Backofen, R.⁷ Georg, J.⁸

11
- 0035954304
- Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
- Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S. 2001. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 11:941-950. http://dx.doi.org/10.1016/S0960-9822(01)00270-6.
- (2001) Curr Biol , vol.11 , pp. 941-950
- Argaman, L.¹ Hershberg, R.² Vogel, J.³ Bejerano, G.⁴ Wagner, E.G.⁵ Margalit, H.⁶ Altuvia, S.⁷

12
- 0036271043
- A bioinformatics based approach to discover smallRNAgenes in the Escherichia coli genome
- Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB. 2002. A bioinformatics based approach to discover smallRNAgenes in the Escherichia coli genome. Biosystems 65:157-177. http://dx.doi.org/10.1016/S0303-2647(02)00013-8.
- (2002) Biosystems , vol.65 , pp. 157-177
- Chen, S.¹ Lesnik, E.A.² Hall, T.A.³ Sampath, R.⁴ Griffey, R.H.⁵ Ecker, D.J.⁶ Blyn, L.B.⁷

13
- 84870324468
- Predicting sRNAs and their targets in bacteria
- Li W, Ying X, Lu Q, Chen L. 2012. Predicting sRNAs and their targets in bacteria. Genomics Proteomics Bioinformatics 10:276-284. http://dx.doi.org/10.1016/j.gpb.2012.09.004.
- (2012) Genomics Proteomics Bioinformatics , vol.10 , pp. 276-284
- Li, W.¹ Ying, X.² Lu, Q.³ Chen, L.⁴

14
- 70349736084
- Experimental approaches for the discovery and characterization of regulatory small RNA
- Sharma CM, Vogel J. 2009. Experimental approaches for the discovery and characterization of regulatory small RNA. Curr Opin Microbiol 12: 536-546. http://dx.doi.org/10.1016/j.mib.2009.07.006.
- (2009) Curr Opin Microbiol , vol.12 , pp. 536-546
- Sharma, C.M.¹ Vogel, J.²

15
- 34250725542
- Identification of bacterial small non-coding RNAs: experimental approaches
- Altuvia S. 2007. Identification of bacterial small non-coding RNAs: experimental approaches. Curr Opin Microbiol 10:257-261. http://dx.doi.org/10.1016/j.mib.2007.05.003.
- (2007) Curr Opin Microbiol , vol.10 , pp. 257-261
- Altuvia, S.¹

16
- 67349278437
- Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes
- Sittka A, Sharma CM, Rolle K, Vogel J. 2009. Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol 6:266-275. http://dx.doi.org/10.4161/rna.6.3.8332.
- (2009) RNA Biol , vol.6 , pp. 266-275
- Sittka, A.¹ Sharma, C.M.² Rolle, K.³ Vogel, J.⁴

17
- 64549149245
- Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing
- Liu JM, Livny J, Lawrence MS, Kimball MD, Waldor MK, Camilli A. 2009. Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing. Nucleic Acids Res 37:e46. http://dx.doi.org/10.1093/nar/gkp080.
- (2009) Nucleic Acids Res , vol.37
- Liu, J.M.¹ Livny, J.² Lawrence, M.S.³ Kimball, M.D.⁴ Waldor, M.K.⁵ Camilli, A.⁶

18
- 78049392640
- Identification of regulatory RNAs in Bacillus subtilis
- Irnov I, Sharma CM, Vogel J, Winkler WC. 2010. Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res 38:6637-6651. http://dx.doi.org/10.1093/nar/gkq454.
- (2010) Nucleic Acids Res , vol.38 , pp. 6637-6651
- Irnov, I.¹ Sharma, C.M.² Vogel, J.³ Winkler, W.C.⁴

19
- 34247101054
- Small noncoding RNAs controlling pathogenesis
- Toledo-Arana A, Repoila F, Cossart P. 2007. Small noncoding RNAs controlling pathogenesis. Curr Opin Microbiol 10:182-188. http://dx.doi.org/10.1016/j.mib.2007.03.004.
- (2007) Curr Opin Microbiol , vol.10 , pp. 182-188
- Toledo-Arana, A.¹ Repoila, F.² Cossart, P.³

20
- 84871692263
- Small RNAs and their role in biofilm formation
- Chambers JR, Sauer K. 2013. Small RNAs and their role in biofilm formation. Trends Microbiol 21:39-49. http://dx.doi.org/10.1016/j.tim.2012.10.008.
- (2013) Trends Microbiol , vol.21 , pp. 39-49
- Chambers, J.R.¹ Sauer, K.²

21
- 66149130975
- Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
- Shi Y, Tyson GW, DeLong EF. 2009. Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature 459:266-269. http://dx.doi.org/10.1038/nature08055.
- (2009) Nature , vol.459 , pp. 266-269
- Shi, Y.¹ Tyson, G.W.² DeLong, E.F.³

22
- 84904993698
- Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis
- Duran-Pinedo AE, Chen T, Teles R, Starr JR, Wang X, Krishnan K, Frias-Lopez J. 2014. Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis. ISME J 8:1659-1672. http://dx.doi.org/10.1038/ismej.2014.23.
- (2014) ISME J , vol.8 , pp. 1659-1672
- Duran-Pinedo, A.E.¹ Chen, T.² Teles, R.³ Starr, J.R.⁴ Wang, X.⁵ Krishnan, K.⁶ Frias-Lopez, J.⁷

23
- 84945568963
- Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis
- Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J. 2015. Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis. Genome Med 7:27. http://dx.doi.org/10.1186/s13073-015-0153-3.
- (2015) Genome Med , vol.7 , pp. 27
- Yost, S.¹ Duran-Pinedo, A.E.² Teles, R.³ Krishnan, K.⁴ Frias-Lopez, J.⁵

24
- 84891776599
- PATRIC, the bacterial bioinformatics database and analysis resource
- Wattam AR, Abraham D, Dalay O, Disz TL, Driscoll T, Gabbard JL, Gillespie JJ, Gough R, Hix D, Kenyon R, Machi D, Mao C, Nordberg EK, Olson R, Overbeek R, Pusch GD, Shukla M, Schulman J, Stevens RL, Sullivan DE, Vonstein V, Warren A, Will R, Wilson MJC, Yoo HS, Zhang C, Zhang Y, Sobral BW. 2014. PATRIC, the bacterial bioinformatics database and analysis resource. Nucleic Acids Res 42:D581-D591. http://dx.doi.org/10.1093/nar/gkt1099.
- (2014) Nucleic Acids Res , vol.42 , pp. D581-D591
- Wattam, A.R.¹ Abraham, D.² Dalay, O.³ Disz, T.L.⁴ Driscoll, T.⁵ Gabbard, J.L.⁶ Gillespie, J.J.⁷ Gough, R.⁸ Hix, D.⁹ Kenyon, R.¹⁰ Machi, D.¹¹ Mao, C.¹² Nordberg, E.K.¹³ Olson, R.¹⁴ Overbeek, R.¹⁵ Pusch, G.D.¹⁶ Shukla, M.¹⁷ Schulman, J.¹⁸ Stevens, R.L.¹⁹ Sullivan, D.E.²⁰ more..

25
- 77951770756
- BEDTools: a flexible suite of utilities for comparing genomic features
- Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinforma Oxf Engl 26:841-842. http://dx.doi.org/10.1093/bioinformatics/btq033.
- (2010) Bioinforma Oxf Engl , vol.26 , pp. 841-842
- Quinlan, A.R.¹ Hall, I.M.²

26
- 79959383523
- Metagenomic biomarker discovery and explanation
- Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. 2011. Metagenomic biomarker discovery and explanation. Genome Biol 12:R60. http://dx.doi.org/10.1186/gb-2011-12-6-r60.
- (2011) Genome Biol , vol.12 , pp. R60
- Segata, N.¹ Izard, J.² Waldron, L.³ Gevers, D.⁴ Miropolsky, L.⁵ Garrett, W.S.⁶ Huttenhower, C.⁷

27
- 84874677498
- A comparison of methods for differential expression analysis of RNA-seq data
- Soneson C, Delorenzi M. 2013. A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinformatics 14:91. http://dx.doi.org/10.1186/1471-2105-14-91.
- (2013) BMC Bioinformatics , vol.14 , pp. 91
- Soneson, C.¹ Delorenzi, M.²

28
- 83055192078
- Differential expression in RNA-seq: a matter of depth
- Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A. 2011. Differential expression in RNA-seq: a matter of depth. Genome Res 21: 2213-2223. http://dx.doi.org/10.1101/gr.124321.111.
- (2011) Genome Res , vol.21 , pp. 2213-2223
- Tarazona, S.¹ García-Alcalde, F.² Dopazo, J.³ Ferrer, A.⁴ Conesa, A.⁵

29
- 45549089420
- High-throughput functional annotation and data mining with the Blast2GO suite
- Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A. 2008. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res 36:3420-3435. http://dx.doi.org/10.1093/nar/gkn176.
- (2008) Nucleic Acids Res , vol.36 , pp. 3420-3435
- Götz, S.¹ García-Gómez, J.M.² Terol, J.³ Williams, T.D.⁴ Nagaraj, S.H.⁵ Nueda, M.J.⁶ Robles, M.⁷ Talón, M.⁸ Dopazo, J.⁹ Conesa, A.¹⁰

30
- 79960610118
- REVIGO summarizes and visualizes long lists of gene ontology terms
- Supek F, Bošnjak M, Škunca N, Šmuc T. 2011. REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One 6:e21800. http://dx.doi.org/10.1371/journal.pone.0021800.
- (2011) PLoS One , vol.6
- Supek, F.¹ Bošnjak, M.² Škunca, N.³ Šmuc, T.⁴

31
- 65549111754
- Infernal 1.0: inference of RNA alignments
- Nawrocki EP, Kolbe DL, Eddy SR. 2009. Infernal 1.0: inference of RNA alignments. Bioinforma Oxf Engl 25:1335-1337. http://dx.doi.org/10.1093/bioinformatics/btp157.
- (2009) Bioinforma Oxf Engl , vol.25 , pp. 1335-1337
- Nawrocki, E.P.¹ Kolbe, D.L.² Eddy, S.R.³

32
- 84876289904
- Visualizing associations between paired "omics" data sets
- González I, Cao K-AL, Davis MJ, Déjean S. 2012. Visualizing associations between paired "omics" data sets. BioData Min 5:19. http://dx.doi.org/10.1186/1756-0381-5-19.
- (2012) BioData Min , vol.5 , pp. 19
- González, I.¹ Cao, K.-A.L.² Davis, M.J.³ Déjean, S.⁴

33
- 60849113429
- Sparse canonical methods for biological data integration: application to a cross-platform study
- Cao K-AL, Martin PG, Robert-Granié C, Besse P. 2009. Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinformatics 10:34. http://dx.doi.org/10.1186/1471-2105-10-34.
- (2009) BMC Bioinformatics , vol.10 , pp. 34
- Cao, K.-A.L.¹ Martin, P.G.² Robert-Granié, C.³ Besse, P.⁴

34
- 57349164450
- A sparse pls for variable selection when integrating omics data
- Cao KL, Rossouw D, Robert-Granié C. 2008. A sparse pls for variable selection when integrating omics data. Stat Appl Genet Mol Biol 7:Article 35.
- (2008) Stat Appl Genet Mol Biol , vol.7
- Cao, K.L.¹ Rossouw, D.² Robert-Granié, C.³

35
- 84949225116
- Biological network exploration with cytoscape 3
- 8.13.1-8.13.24
- Su G, Morris JH, Demchak B, Bader GD. 2014. Biological network exploration with cytoscape 3. Curr Protoc Bioinformatics 47:8.13.1-8.13.24. http://dx.doi.org/10.1002/0471250953.bi0813s47.
- (2014) Curr Protoc Bioinformatics , vol.47
- Su, G.¹ Morris, J.H.² Demchak, B.³ Bader, G.D.⁴

36
- 84867300120
- RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model
- Wenzel A, Akbasli E, Gorodkin J. 2012. RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model. Bioinforma Oxf Engl 28:2738-2746. http://dx.doi.org/10.1093/bioinformatics/bts519.
- (2012) Bioinforma Oxf Engl , vol.28 , pp. 2738-2746
- Wenzel, A.¹ Akbasli, E.² Gorodkin, J.³

37
- 77957244650
- Search and clustering orders of magnitude faster than BLAST
- Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinforma Oxf Engl 26:2460-2461. http://dx.doi.org/10.1093/bioinformatics/btq461.
- (2010) Bioinforma Oxf Engl , vol.26 , pp. 2460-2461
- Edgar, R.C.¹

38
- 77953212372
- Gene ontology analysis for RNA-seq: accounting for selection bias
- Young MD, Wakefield MJ, Smyth GK, Oshlack A. 2010. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 11:R14. http://dx.doi.org/10.1186/gb-2010-11-2-r14.
- (2010) Genome Biol , vol.11 , pp. R14
- Young, M.D.¹ Wakefield, M.J.² Smyth, G.K.³ Oshlack, A.⁴

39
- 0031989077
- Microbial complexes in subgingival plaque
- Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RLJ. 1998. Microbial complexes in subgingival plaque. J Clin Periodontol 25:134-144. http://dx.doi.org/10.1111/j.1600-051X.1998.tb02419.x.
- (1998) J Clin Periodontol , vol.25 , pp. 134-144
- Socransky, S.S.¹ Haffajee, A.D.² Cugini, M.A.³ Smith, C.⁴ Kent, R.L.J.⁵

40
- 20444471123
- Porphyromonas gingivalis, Treponema denticola, and Tannerella forsythia: the "red complex," a prototype polybacterial pathogenic consortium in periodontitis
- Holt SC, Ebersole JL. 2005. Porphyromonas gingivalis, Treponema denticola, and Tannerella forsythia: the "red complex," a prototype polybacterial pathogenic consortium in periodontitis. Periodontol 2000 38:72-122. http://dx.doi.org/10.1111/j.1600-0757.2005.00113.x.
- (2005) Periodontol 2000 , vol.38 , pp. 72-122
- Holt, S.C.¹ Ebersole, J.L.²

41
- 81755166205
- Low-abundance biofilm species orchestrates inflammatory periodontal disease through the commensal microbiota and complement
- Hajishengallis G, Liang S, Payne MA, Hashim A, Jotwani R, Eskan MA, McIntosh ML, Alsam A, Kirkwood KL, Lambris JD, Darveau RP, Curtis MA. 2011. Low-abundance biofilm species orchestrates inflammatory periodontal disease through the commensal microbiota and complement. Cell Host Microbe 10:497-506. http://dx.doi.org/10.1016/j.chom.2011.10.006.
- (2011) Cell Host Microbe , vol.10 , pp. 497-506
- Hajishengallis, G.¹ Liang, S.² Payne, M.A.³ Hashim, A.⁴ Jotwani, R.⁵ Eskan, M.A.⁶ McIntosh, M.L.⁷ Alsam, A.⁸ Kirkwood, K.L.⁹ Lambris, J.D.¹⁰ Darveau, R.P.¹¹ Curtis, M.A.¹²

42
- 84867887781
- The keystone-pathogen hypothesis
- Hajishengallis G, Darveau RP, Curtis MA. 2012. The keystone-pathogen hypothesis. Nat Rev Microbiol 10:717-725. http://dx.doi.org/10.1038/nrmicro2873.
- (2012) Nat Rev Microbiol , vol.10 , pp. 717-725
- Hajishengallis, G.¹ Darveau, R.P.² Curtis, M.A.³

43
- 77955155869
- Base pairing small RNAs and their roles in global regulatory networks
- Beisel CL, Storz G. 2010. Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol Rev 34:866-882. http://dx.doi.org/10.1111/j.1574-6976.2010.00241.x.
- (2010) FEMS Microbiol Rev , vol.34 , pp. 866-882
- Beisel, C.L.¹ Storz, G.²

44
- 80053019485
- Regulation by small RNAs in bacteria: expanding frontiers
- Storz G, Vogel J, Wassarman KM. 2011. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 43:880-891. http://dx.doi.org/10.1016/j.molcel.2011.08.022.
- (2011) Mol Cell , vol.43 , pp. 880-891
- Storz, G.¹ Vogel, J.² Wassarman, K.M.³

45
- 84901707142
- Physiological roles of small RNA molecules
- Michaux C, Verneuil N, Hartke A, Giard J-C. 2014. Physiological roles of small RNA molecules. Microbiol Read Engl 160:1007-1019. http://dx.doi.org/10.1099/mic.0.076208-0.
- (2014) Microbiol Read Engl , vol.160 , pp. 1007-1019
- Michaux, C.¹ Verneuil, N.² Hartke, A.³ Giard, J.-C.⁴

46
- 80053458416
- A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors
- Gong H, Vu G-P, Bai Y, Chan E, Wu R, Yang E, Liu F, Lu S. 2011. A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors. PLoS Pathog 7:e1002120. http://dx.doi.org/10.1371/journal.ppat.1002120.
- (2011) PLoS Pathog , vol.7
- Gong, H.¹ Vu, G.-P.² Bai, Y.³ Chan, E.⁴ Wu, R.⁵ Yang, E.⁶ Liu, F.⁷ Lu, S.⁸

47
- 80053062656
- Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersiniaspecific small, noncoding RNAs required for virulence
- Koo JT, Alleyne TM, Schiano CA, Jafari N, Lathem WW. 2011. Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersiniaspecific small, noncoding RNAs required for virulence. Proc Natl Acad Sci U S A 108:E709-E717. http://dx.doi.org/10.1073/pnas.1101655108.
- (2011) Proc Natl Acad Sci U S A , vol.108 , pp. E709-E717
- Koo, J.T.¹ Alleyne, T.M.² Schiano, C.A.³ Jafari, N.⁴ Lathem, W.W.⁵

48
- 84857066577
- Metatranscriptomic analysis of microbes in an Oceanfront deep-subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation
- Murakami S, Fujishima K, Tomita M, Kanai A. 2012. Metatranscriptomic analysis of microbes in an Oceanfront deep-subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation. Appl Environ Microbiol 78:1015-1022. http://dx.doi.org/10.1128/AEM.06811-11.
- (2012) Appl Environ Microbiol , vol.78 , pp. 1015-1022
- Murakami, S.¹ Fujishima, K.² Tomita, M.³ Kanai, A.⁴

49
- 79952401369
- Metatranscriptomic approach to analyze the functional human gut microbiota
- Gosalbes MJ, Durbán A, Pignatelli M, Abellan JJ, Jiménez-Hernández N, Pérez-Cobas AE, Latorre A, Moya A. 2011. Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One 6:e17447. http://dx.doi.org/10.1371/journal.pone.0017447.
- (2011) PLoS One , vol.6
- Gosalbes, M.J.¹ Durbán, A.² Pignatelli, M.³ Abellan, J.J.⁴ Jiménez-Hernández, N.⁵ Pérez-Cobas, A.E.⁶ Latorre, A.⁷ Moya, A.⁸

50
- 84911397225
- The inflammophilic character of the periodontitis-associated microbiota
- Hajishengallis G. 2014. The inflammophilic character of the periodontitis-associated microbiota. Mol Oral Microbiol 29:248-257. http://dx.doi.org/10.1111/omi.12065.
- (2014) Mol Oral Microbiol , vol.29 , pp. 248-257
- Hajishengallis, G.¹

51
- 84864590175
- Control of virulence by small RNAs in Streptococcus pneumoniae
- Mann B, van Opijnen T, Wang J, Obert C, Wang Y-D, Carter R, McGoldrick DJ, Ridout G, Camilli A, Tuomanen EI, Rosch JW. 2012. Control of virulence by small RNAs in Streptococcus pneumoniae. PLoS Pathog 8:e1002788. http://dx.doi.org/10.1371/journal.ppat.1002788.
- (2012) PLoS Pathog , vol.8
- Mann, B.¹ van Opijnen, T.² Wang, J.³ Obert, C.⁴ Wang, Y.-D.⁵ Carter, R.⁶ McGoldrick, D.J.⁷ Ridout, G.⁸ Camilli, A.⁹ Tuomanen, E.I.¹⁰ Rosch, J.W.¹¹

52
- 84860715141
- Comparative transcriptomics of pathogenic and nonpathogenic Listeria species
- Wurtzel O, Sesto N, Mellin JR, Karunker I, Edelheit S, Bécavin C, Archambaud C, Cossart P, Sorek R. 2012. Comparative transcriptomics of pathogenic and nonpathogenic Listeria species. Mol Syst Biol 8:583. http://dx.doi.org/10.1038/msb.2012.11.
- (2012) Mol Syst Biol , vol.8 , pp. 583
- Wurtzel, O.¹ Sesto, N.² Mellin, J.R.³ Karunker, I.⁴ Edelheit, S.⁵ Bécavin, C.⁶ Archambaud, C.⁷ Cossart, P.⁸ Sorek, R.⁹

53
- 79960081500
- The riboflavin analog roseoflavin targets an FMN-riboswitch and blocks Listeria monocytogenes growth, but also stimulates virulence gene-expression and infection
- Mansjö M, Johansson J. 2011. The riboflavin analog roseoflavin targets an FMN-riboswitch and blocks Listeria monocytogenes growth, but also stimulates virulence gene-expression and infection. RNA Biol 8:674-680. http://dx.doi.org/10.4161/rna.8.4.15586.
- (2011) RNA Biol , vol.8 , pp. 674-680
- Mansjö, M.¹ Johansson, J.²

54
- 84863923278
- Riboswitches and the RNA World
- Breaker RR. 2012. Riboswitches and the RNA World. Cold Spring Harb Perspect Biol 4:a003566. http://dx.doi.org/10.1101/cshperspect.a003566.
- (2012) Cold Spring Harb Perspect Biol , vol.4
- Breaker, R.R.¹

55
- 84896279030
- The role of CRISPR-Cas systems in virulence of pathogenic bacteria
- Louwen R, Staals RHJ, Endtz HP, van Baarlen P, van der Oost J. 2014. The role of CRISPR-Cas systems in virulence of pathogenic bacteria. Microbiol Mol Biol Rev 78:74-88. http://dx.doi.org/10.1128/MMBR.00039-13.
- (2014) Microbiol Mol Biol Rev , vol.78 , pp. 74-88
- Louwen, R.¹ Staals, R.H.J.² Endtz, H.P.³ van Baarlen, P.⁴ van der Oost, J.⁵

56
- 84906061867
- Involvement of Enterococcus faecalis small RNAs in stress response and virulence
- Michaux C, Hartke A, Martini C, Reiss S, Albrecht D, Budin-Verneuil A, Sanguinetti M, Engelmann S, Hain T, Verneuil N, Giard J-C. 2014. Involvement of Enterococcus faecalis small RNAs in stress response and virulence. Infect Immun 82:3599-3611. http://dx.doi.org/10.1128/IAI.01900-14.
- (2014) Infect Immun , vol.82 , pp. 3599-3611
- Michaux, C.¹ Hartke, A.² Martini, C.³ Reiss, S.⁴ Albrecht, D.⁵ Budin-Verneuil, A.⁶ Sanguinetti, M.⁷ Engelmann, S.⁸ Hain, T.⁹ Verneuil, N.¹⁰ Giard, J.-C.¹¹

57
- 0034387983
- SRPdependent cotranslational targeting and SecA-dependent translocation analyzed as individual steps in the export of a bacterial protein
- Neumann-Haefelin C, Schäfer U, Müller M, Koch H-G. 2000. SRPdependent cotranslational targeting and SecA-dependent translocation analyzed as individual steps in the export of a bacterial protein. EMBO J 19:6419-6426. http://dx.doi.org/10.1093/emboj/19.23.6419.
- (2000) EMBO J , vol.19 , pp. 6419-6426
- Neumann-Haefelin, C.¹ Schäfer, U.² Müller, M.³ Koch, H.-G.⁴

58
- 0032511182
- Combinatorial selection of a small RNA that induces amplification of IncFII plasmids in Escherichia coli
- Ferber MJ, Maher LJ. 1998. Combinatorial selection of a small RNA that induces amplification of IncFII plasmids in Escherichia coli. J Mol Biol 279:565-576. http://dx.doi.org/10.1006/jmbi.1998.1800.
- (1998) J Mol Biol , vol.279 , pp. 565-576
- Ferber, M.J.¹ Maher, L.J.²

59
- 0034025902
- U-turns and regulatory RNAs
- Franch T, Gerdes K. 2000. U-turns and regulatory RNAs. Curr Opin Microbiol 3:159-164. http://dx.doi.org/10.1016/S1369-5274(00)00069-2.
- (2000) Curr Opin Microbiol , vol.3 , pp. 159-164
- Franch, T.¹ Gerdes, K.²

60
- 77949547790
- Ethanolamine utilization in bacterial pathogens: roles and regulation
- Garsin DA. 2010. Ethanolamine utilization in bacterial pathogens: roles and regulation. Nat Rev Microbiol 8:290-295. http://dx.doi.org/10.1038/nrmicro2334.
- (2010) Nat Rev Microbiol , vol.8 , pp. 290-295
- Garsin, D.A.¹

61
- 0017082007
- Ethanolamine catabolism by bacteria, including Escherichia coli
- Blackwell CM, Scarlett FA, Turner JM. 1976. Ethanolamine catabolism by bacteria, including Escherichia coli. Biochem Soc Trans 4:495-497.
- (1976) Biochem Soc Trans , vol.4 , pp. 495-497
- Blackwell, C.M.¹ Scarlett, F.A.² Turner, J.M.³

62
- 0017165177
- Microbial metabolism of amino alcohols. Ethanolamine catabolism mediated by coenzyme B12-dependent ethanolamine ammonia-lyase in Escherichia coli and Klebsiella aerogenes
- Scarlett FA, Turner JM. 1976. Microbial metabolism of amino alcohols. Ethanolamine catabolism mediated by coenzyme B12-dependent ethanolamine ammonia-lyase in Escherichia coli and Klebsiella aerogenes. J Gen Microbiol 95:173-176.
- (1976) J Gen Microbiol , vol.95 , pp. 173-176
- Scarlett, F.A.¹ Turner, J.M.²

63
- 84906707411
- A riboswitch-containing sRNA controls gene expression by sequestration of a response regulator
- DebRoy S, Gebbie M, Ramesh A, Goodson JR, Cruz MR, van Hoof A, Winkler WC, Garsin DA. 2014. A riboswitch-containing sRNA controls gene expression by sequestration of a response regulator. Science 345:937-940. http://dx.doi.org/10.1126/science.1255091.
- (2014) Science , vol.345 , pp. 937-940
- DebRoy, S.¹ Gebbie, M.² Ramesh, A.³ Goodson, J.R.⁴ Cruz, M.R.⁵ van Hoof, A.⁶ Winkler, W.C.⁷ Garsin, D.A.⁸

64
- 79956080756
- Transcription antitermination by a phosphorylated response regulator and cobalamin-dependent termination at a B12 riboswitch contribute to ethanolamine utilization in Enterococcus faecalis
- Baker KA, Perego M. 2011. Transcription antitermination by a phosphorylated response regulator and cobalamin-dependent termination at a B12 riboswitch contribute to ethanolamine utilization in Enterococcus faecalis. J Bacteriol 193:2575-2586. http://dx.doi.org/10.1128/JB.00217-11.
- (2011) J Bacteriol , vol.193 , pp. 2575-2586
- Baker, K.A.¹ Perego, M.²

65
- 33646483181
- The role of RNAs in the regulation of virulence-gene expression
- Romby P, Vandenesch F, Wagner EGH. 2006. The role of RNAs in the regulation of virulence-gene expression. Curr Opin Microbiol 9:229-236. http://dx.doi.org/10.1016/j.mib.2006.02.005.
- (2006) Curr Opin Microbiol , vol.9 , pp. 229-236
- Romby, P.¹ Vandenesch, F.² Wagner, E.G.H.³

66
- 84860764110
- Noncoding sRNAs regulate virulence in the bacterial pathogen Vibrio cholerae
- Bardill JP, Hammer BK. 2012. Noncoding sRNAs regulate virulence in the bacterial pathogen Vibrio cholerae. RNA Biol 9:392-401. http://dx.doi.org/10.4161/rna.19975.
- (2012) RNA Biol , vol.9 , pp. 392-401
- Bardill, J.P.¹ Hammer, B.K.²

67
- 81255142801
- Bacterial transition metal P1B-ATPases, transport mechanism and roles in virulence
- Argüello JM, González-Guerrero M, Raimunda D. 2011. Bacterial transition metal P1B-ATPases, transport mechanism and roles in virulence. Biochemistry 50:9940-9949. http://dx.doi.org/10.1021/bi201418k.
- (2011) Biochemistry , vol.50 , pp. 9940-9949
- Argüello, J.M.¹ González-Guerrero, M.² Raimunda, D.³

68
- 84891153481
- 2+ transporting ATPases, CtpD and CtpJ, in Mycobacterium tuberculosis virulence
- 2+ transporting ATPases, CtpD and CtpJ, in Mycobacterium tuberculosis virulence. Mol Microbiol 91:185-197. http://dx.doi.org/10.1111/mmi.12454.
- (2014) Mol Microbiol , vol.91 , pp. 185-197
- Raimunda, D.¹ Long, J.E.² Padilla-Benavides, T.³ Sassetti, C.M.⁴ Argüello, J.M.⁵

69
- 84881013236
- A multicopper oxidase is required for copper resistance in Mycobacterium tuberculosis
- Rowland JL, Niederweis M. 2013. A multicopper oxidase is required for copper resistance in Mycobacterium tuberculosis. J Bacteriol 195:3724-3733. http://dx.doi.org/10.1128/JB.00546-13.
- (2013) J Bacteriol , vol.195 , pp. 3724-3733
- Rowland, J.L.¹ Niederweis, M.²

70
- 77951228745
- The multi-copper-ion oxidase CueO of Salmonella enterica serovar Typhimurium is required for systemic virulence
- Achard MES, Tree JJ, Holden JA, Simpfendorfer KR, Wijburg OLC, Strugnell RA, Schembri MA, Sweet MJ, Jennings MP, McEwan AG. 2010. The multi-copper-ion oxidase CueO of Salmonella enterica serovar Typhimurium is required for systemic virulence. Infect Immun 78:2312-2319. http://dx.doi.org/10.1128/IAI.01208-09.
- (2010) Infect Immun , vol.78 , pp. 2312-2319
- Achard, M.E.S.¹ Tree, J.J.² Holden, J.A.³ Simpfendorfer, K.R.⁴ Wijburg, O.L.C.⁵ Strugnell, R.A.⁶ Schembri, M.A.⁷ Sweet, M.J.⁸ Jennings, M.P.⁹ McEwan, A.G.¹⁰

71
- 77749280253
- Treponema denticola biofilminduced expression of a bacteriophage, toxin-antitoxin systems, and transposases
- Mitchell HL, Dashper SG, Catmull DV, Paolini RA, Cleal SM, Slakeski N, Tan KH, Reynolds EC. 2010. Treponema denticola biofilminduced expression of a bacteriophage, toxin-antitoxin systems, and transposases. Microbiology 156:774-788. http://dx.doi.org/10.1099/mic.0.033654-0.
- (2010) Microbiology , vol.156 , pp. 774-788
- Mitchell, H.L.¹ Dashper, S.G.² Catmull, D.V.³ Paolini, R.A.⁴ Cleal, S.M.⁵ Slakeski, N.⁶ Tan, K.H.⁷ Reynolds, E.C.⁸

72
- 79952353785
- In-vivo-induced antigenic determinants of Fusobacterium nucleatum subsp. nucleatum
- Lee H-R, Rhyu I-C, Kim H-D, Jun H-K, Min B-M, Lee S-H, Choi B-K. 2011. In-vivo-induced antigenic determinants of Fusobacterium nucleatum subsp. nucleatum. Mol Oral Microbiol 26:164-172. http://dx.doi.org/10.1111/j.2041-1014.2010.00594.x.
- (2011) Mol Oral Microbiol , vol.26 , pp. 164-172
- Lee, H.-R.¹ Rhyu, I.-C.² Kim, H.-D.³ Jun, H.-K.⁴ Min, B.-M.⁵ Lee, S.-H.⁶ Choi, B.-K.⁷

73
- 84868324252
- The small RNA RteR inhibits transfer of the Bacteroides conjugative transposon CTnDOT
- Waters JL, Salyers AA. 2012. The small RNA RteR inhibits transfer of the Bacteroides conjugative transposon CTnDOT. J Bacteriol 194:5228-5236. http://dx.doi.org/10.1128/JB.00941-12.
- (2012) J Bacteriol , vol.194 , pp. 5228-5236
- Waters, J.L.¹ Salyers, A.A.²

74
- 84896721715
- Expression of Porphyromonas gingivalis small RNA in response to hemin availability identified using microarray and RNA-seq analysis
- Phillips PL, Progulske-Fox A, Grieshaber NA. 2014. Expression of Porphyromonas gingivalis small RNA in response to hemin availability identified using microarray and RNA-seq analysis. FEMS Microbiol Lett 351: 202-208. http://dx.doi.org/10.1111/1574-6968.12320.
- (2014) FEMS Microbiol Lett , vol.351 , pp. 202-208
- Phillips, P.L.¹ Progulske-Fox, A.² Grieshaber, N.A.³

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