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Volumn 7, Issue 4, 2015, Pages 1122-1132

Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing

Author keywords

Effective size; Fitness effect; Mutation; Selection

Indexed keywords

ANIMAL; CLASSIFICATION; DEMOGRAPHY; DNA SEQUENCE; EXOME; EXON; GENETIC SELECTION; GENETICS; GENOMICS; HUMAN; INDEL MUTATION; PAN TROGLODYTES; REPRODUCTIVE FITNESS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84940752357     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evv058     Document Type: Article
Times cited : (26)

References (28)
  • 1
    • 84904381004 scopus 로고    scopus 로고
    • Effects of new mutations on fitness: Insights from models and data. "The year in evolutionary biology 2014"
    • Bataillon T, Bailey SF. 2014. Effects of new mutations on fitness: insights from models and data. "The year in evolutionary biology 2014.". Ann N Y Acad Sci. 1320:76-92.
    • (2014) Ann N Y Acad Sci. , vol.1320 , pp. 76-92
    • Bataillon, T.1    Bailey, S.F.2
  • 3
    • 44949129000 scopus 로고    scopus 로고
    • Assessing the evolutionary impact of amino acid mutations in the human genome
    • Boyko AR, et al. 2008. Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet. 4:e1000083.
    • (2008) PLoS Genet. , vol.4 , pp. e1000083
    • Boyko, A.R.1
  • 4
    • 43249086697 scopus 로고    scopus 로고
    • Analysis of chimpanzee history based on genome sequence alignments
    • Caswell JL, et al. 2008. Analysis of chimpanzee history based on genome sequence alignments. PLoS Genet. 4:e1000057.
    • (2008) PLoS Genet. , vol.4 , pp. e1000057
    • Caswell, J.L.1
  • 5
    • 79961039058 scopus 로고    scopus 로고
    • Testing for ancient admixture between closely related populations
    • Durand EY, Patterson N, Reich D, Slatkin M. 2011. Testing for ancient admixture between closely related populations. Mol Biol Evol. 28:2239-2252.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2239-2252
    • Durand, E.Y.1    Patterson, N.2    Reich, D.3    Slatkin, M.4
  • 7
    • 68949202924 scopus 로고    scopus 로고
    • Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change
    • Eyre-Walker A, Keightley PD. 2009. Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. Mol Biol Evol. 26:2097-2108.
    • (2009) Mol Biol Evol. , vol.26 , pp. 2097-2108
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 8
    • 33745347447 scopus 로고    scopus 로고
    • The distribution of fitness effects of new deleterious amino acid mutations in humans
    • Eyre-Walker A, Woolfit M, Phelps T. 2006. The distribution of fitness effects of new deleterious amino acid mutations in humans. Genetics 173:891-900.
    • (2006) Genetics , vol.173 , pp. 891-900
    • Eyre-Walker, A.1    Woolfit, M.2    Phelps, T.3
  • 9
    • 1942437481 scopus 로고    scopus 로고
    • Evidence for a complex demographic history of chimpanzees
    • Fischer A, Wiebe V, Pääbo S, Przeworski M. 2004. Evidence for a complex demographic history of chimpanzees. Mol Biol Evol. 21:799-808.
    • (2004) Mol Biol Evol. , vol.21 , pp. 799-808
    • Fischer, A.1    Wiebe, V.2    Pääbo, S.3    Przeworski, M.4
  • 10
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • Genomes Project Consortium, et al. 2012. An integrated map of genetic variation from 1, 092 human genomes. Nature 491:56-65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Genomes Project Consortium1
  • 11
    • 79953215707 scopus 로고    scopus 로고
    • From the Cover: Evidence from Cameroon reveals differences in the genetic structure and histories of chimpanzee populations
    • Gonder MK, et al. 2011. From the Cover: Evidence from Cameroon reveals differences in the genetic structure and histories of chimpanzee populations. Proc Natl Acad Sci U S A. 108:4466-4471.
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , pp. 4466-4471
    • Gonder, M.K.1
  • 12
    • 77952297997 scopus 로고    scopus 로고
    • The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses
    • Hey J. 2010. The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses. Mol Biol Evol. 27:921-933.
    • (2010) Mol Biol Evol. , vol.27 , pp. 921-933
    • Hey, J.1
  • 13
    • 84890884415 scopus 로고    scopus 로고
    • Contrasting demographic histories of the neighboring bonobo and chimpanzee
    • Hvilsom C, Carlsen F, Heller R, Jaffré N, Siegismund HR. 2014. Contrasting demographic histories of the neighboring bonobo and chimpanzee. Primates 55:101-112.
    • (2014) Primates , vol.55 , pp. 101-112
    • Hvilsom, C.1    Carlsen, F.2    Heller, R.3    Jaffré, N.4    Siegismund, H.R.5
  • 14
    • 84863183635 scopus 로고    scopus 로고
    • Extensive X-linked adaptive evolution in central chimpanzees
    • Hvilsom C, et al. 2012. Extensive X-linked adaptive evolution in central chimpanzees. Proc Natl Acad Sci U S A. 109:2054-2059.
    • (2012) Proc Natl Acad Sci U S A. , vol.109 , pp. 2054-2059
    • Hvilsom, C.1
  • 15
    • 84878593320 scopus 로고    scopus 로고
    • Understanding geographic origins and history of admixture among chimpanzees in European zoos, with implications for future breeding programmes
    • Hvilsom C, et al. 2013. Understanding geographic origins and history of admixture among chimpanzees in European zoos, with implications for future breeding programmes. Heredity (Edinb) 110:586-593.
    • (2013) Heredity (Edinb) , vol.110 , pp. 586-593
    • Hvilsom, C.1
  • 16
    • 77951600170 scopus 로고    scopus 로고
    • What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?
    • Keightley P, Eyre-Walker A. 2010. What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?. Philos Trans R Soc Lond B Biol Sci. 365:1187-1193.
    • (2010) Philos Trans R Soc Lond B Biol Sci. , vol.365 , pp. 1187-1193
    • Keightley, P.1    Eyre-Walker, A.2
  • 17
    • 37249042614 scopus 로고    scopus 로고
    • Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
    • Keightley PD, Eyre-Walker A. 2007. Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Genetics 177:2251-2261.
    • (2007) Genetics , vol.177 , pp. 2251-2261
    • Keightley, P.D.1    Eyre-Walker, A.2
  • 18
    • 84876350995 scopus 로고    scopus 로고
    • A comparison of models to infer the distribution of fitness effects of new mutations
    • Kousathanas A, Keightley PD. 2013. A comparison of models to infer the distribution of fitness effects of new mutations. Genetics 193:1197-1208.
    • (2013) Genetics , vol.193 , pp. 1197-1208
    • Kousathanas, A.1    Keightley, P.D.2
  • 19
    • 84897043964 scopus 로고    scopus 로고
    • Comparative population genomics: Power and principles for the inference of functionality
    • Lawrie DS, Petrov DA. 2014. Comparative population genomics: power and principles for the inference of functionality. Trends Genet. 30:133-139.
    • (2014) Trends Genet. , vol.30 , pp. 133-139
    • Lawrie, D.S.1    Petrov, D.A.2
  • 20
    • 84879553718 scopus 로고    scopus 로고
    • Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula
    • Paape T, et al. 2013. Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula. Mol Ecol. 22:3525-3538.
    • (2013) Mol Ecol. , vol.22 , pp. 3525-3538
    • Paape, T.1
  • 21
    • 84881159598 scopus 로고    scopus 로고
    • Great ape genetic diversity and population history
    • Prado-Martinez J, et al. 2013. Great ape genetic diversity and population history. Nature 499:471-475.
    • (2013) Nature , vol.499 , pp. 471-475
    • Prado-Martinez, J.1
  • 22
  • 23
    • 77958027204 scopus 로고    scopus 로고
    • More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure
    • Stone AC, et al. 2010. More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philos Trans R Soc Lond B Biol Sci. 365:3277-3288.
    • (2010) Philos Trans R Soc Lond B Biol Sci. , vol.365 , pp. 3277-3288
    • Stone, A.C.1
  • 24
    • 84902589944 scopus 로고    scopus 로고
    • Nonhuman genetics. Strong male bias drives germline mutation in chimpanzees
    • Venn O, et al. 2014. Nonhuman genetics. Strong male bias drives germline mutation in chimpanzees. Science 344:1272-1275.
    • (2014) Science , vol.344 , pp. 1272-1275
    • Venn, O.1
  • 25
    • 77952816206 scopus 로고    scopus 로고
    • Bayesian inference of the demographic history of chimpanzees
    • Wegmann D, Excoffier L. 2010. Bayesian inference of the demographic history of chimpanzees. Mol Biol Evol. 27:1425-1435.
    • (2010) Mol Biol Evol. , vol.27 , pp. 1425-1435
    • Wegmann, D.1    Excoffier, L.2
  • 26
    • 0033824906 scopus 로고    scopus 로고
    • Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes
    • Weinreich DM, Rand DM. 2000. Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes. Genetics 156:385-399.
    • (2000) Genetics , vol.156 , pp. 385-399
    • Weinreich, D.M.1    Rand, D.M.2
  • 27
    • 54349106869 scopus 로고    scopus 로고
    • Divergence and polymorphism under the nearly neutral theory of molecular evolution
    • Welch JJ, Eyre-Walker A, Waxman D. 2008. Divergence and polymorphism under the nearly neutral theory of molecular evolution. J Mol Evol. 67:418-426.
    • (2008) J Mol Evol. , vol.67 , pp. 418-426
    • Welch, J.J.1    Eyre-Walker, A.2    Waxman, D.3
  • 28
    • 12344265079 scopus 로고    scopus 로고
    • Divergence population genetics of chimpanzees
    • Won Y-J J, Hey J. 2005. Divergence population genetics of chimpanzees. Mol Biol Evol. 22:297-307.
    • (2005) Mol Biol Evol. , vol.22 , pp. 297-307
    • Won, J.Y.-J.1    Hey, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.