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Volumn 11, Issue 8, 2015, Pages

HLA Class-II Associated HIV Polymorphisms Predict Escape from CD4+ T Cell Responses

Author keywords

[No Author keywords available]

Indexed keywords

7 AMINODACTINOMYCIN; COMPLEMENTARY DNA; EPITOPE; GAMMA INTERFERON; HLA ANTIGEN CLASS 2;

EID: 84940745684     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1005111     Document Type: Article
Times cited : (24)

References (56)
  • 1
    • 43549109265 scopus 로고    scopus 로고
    • Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients
    • Goepfert PA, Lumm W, Farmer P, Matthews P, Prendergast A, et al. (2008) Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients. J Exp Med 205: 1009–1017. doi: 10.1084/jem.20072457 18426987
    • (2008) J Exp Med , vol.205 , pp. 1009-1017
    • Goepfert, P.A.1    Lumm, W.2    Farmer, P.3    Matthews, P.4    Prendergast, A.5
  • 2
    • 0028811974 scopus 로고
    • Viral dynamics in human immunodeficiency virus type 1 infection
    • Wei X, Ghosh SK, Taylor ME, Johnson VA, Emini EA, et al. (1995) Viral dynamics in human immunodeficiency virus type 1 infection. Nature 373: 117–122. 7529365
    • (1995) Nature , vol.373 , pp. 117-122
    • Wei, X.1    Ghosh, S.K.2    Taylor, M.E.3    Johnson, V.A.4    Emini, E.A.5
  • 3
    • 0027366231 scopus 로고
    • Immune escape by human immunodeficiency virus type 1 from neutralizing antibodies: evidence for multiple pathways
    • Watkins BA, Reitz MS, Jr.Wilson CA, Aldrich K, Davis AE, et al. (1993) Immune escape by human immunodeficiency virus type 1 from neutralizing antibodies: evidence for multiple pathways. J Virol 67: 7493–7500. 7693973
    • (1993) J Virol , vol.67 , pp. 7493-7500
    • Watkins, B.A.1    Reitz, M.S.2    Wilson, C.A.3    Aldrich, K.4    Davis, A.E.5
  • 4
    • 0037456827 scopus 로고    scopus 로고
    • Antibody neutralization and escape by HIV-1
    • Wei X, Decker JM, Wang S, Hui H, Kappes JC, et al. (2003) Antibody neutralization and escape by HIV-1. Nature 422: 307–312. 12646921
    • (2003) Nature , vol.422 , pp. 307-312
    • Wei, X.1    Decker, J.M.2    Wang, S.3    Hui, H.4    Kappes, J.C.5
  • 5
    • 0030869269 scopus 로고    scopus 로고
    • Treatment with indinavir, zidovudine, and lamivudine in adults with human immunodeficiency virus infection and prior antiretroviral therapy
    • Gulick RM, Mellors JW, Havlir D, Eron JJ, Gonzalez C, et al. (1997) Treatment with indinavir, zidovudine, and lamivudine in adults with human immunodeficiency virus infection and prior antiretroviral therapy. N Engl J Med 337: 734–739. 9287228
    • (1997) N Engl J Med , vol.337 , pp. 734-739
    • Gulick, R.M.1    Mellors, J.W.2    Havlir, D.3    Eron, J.J.4    Gonzalez, C.5
  • 6
    • 16944365445 scopus 로고    scopus 로고
    • Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
    • Borrow P, Lewicki H, Wei X, Horwitz MS, Peffer N, et al. (1997) Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat Med 3: 205–211. 9018240
    • (1997) Nat Med , vol.3 , pp. 205-211
    • Borrow, P.1    Lewicki, H.2    Wei, X.3    Horwitz, M.S.4    Peffer, N.5
  • 7
    • 27144513224 scopus 로고    scopus 로고
    • Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution
    • Allen TM, Altfeld M, Geer SC, Kalife ET, Moore C, et al. (2005) Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J Virol 79: 13239–13249. 16227247
    • (2005) J Virol , vol.79 , pp. 13239-13249
    • Allen, T.M.1    Altfeld, M.2    Geer, S.C.3    Kalife, E.T.4    Moore, C.5
  • 8
    • 0037389643 scopus 로고    scopus 로고
    • Rapid evolution of the neutralizing antibody response to HIV type 1 infection
    • Richman DD, Wrin T, Little SJ, Petropoulos CJ, (2003) Rapid evolution of the neutralizing antibody response to HIV type 1 infection. Proc Natl Acad Sci U S A 100: 4144–4149. 12644702
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 4144-4149
    • Richman, D.D.1    Wrin, T.2    Little, S.J.3    Petropoulos, C.J.4
  • 9
    • 79961138654 scopus 로고    scopus 로고
    • HIV-1 adaptation to NK-cell-mediated immune pressure
    • Alter G, Heckerman D, Schneidewind A, Fadda L, Kadie CM, et al. (2011) HIV-1 adaptation to NK-cell-mediated immune pressure. Nature 476: 96–100. doi: 10.1038/nature10237 21814282
    • (2011) Nature , vol.476 , pp. 96-100
    • Alter, G.1    Heckerman, D.2    Schneidewind, A.3    Fadda, L.4    Kadie, C.M.5
  • 12
    • 69249208673 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 escapes from interleukin-2-producing CD4+ T-cell responses without high-frequency fixation of mutations
    • Jones RB, Yue FY, Gu XX, Hunter DV, Mujib S, et al. (2009) Human immunodeficiency virus type 1 escapes from interleukin-2-producing CD4+ T-cell responses without high-frequency fixation of mutations. J Virol 83: 8722–8732. doi: 10.1128/JVI.00433-09 19553327
    • (2009) J Virol , vol.83 , pp. 8722-8732
    • Jones, R.B.1    Yue, F.Y.2    Gu, X.X.3    Hunter, D.V.4    Mujib, S.5
  • 13
    • 84868286217 scopus 로고    scopus 로고
    • CD8+ and CD4+ cytotoxic T cell escape mutations precede breakthrough SIVmac239 viremia in an elite controller
    • Burwitz BJ, Giraldo-Vela JP, Reed J, Newman LP, Bean AT, et al. (2012) CD8+ and CD4+ cytotoxic T cell escape mutations precede breakthrough SIVmac239 viremia in an elite controller. Retrovirology 9: 91. doi: 10.1186/1742-4690-9-91 23131037
    • (2012) Retrovirology , vol.9 , pp. 91
    • Burwitz, B.J.1    Giraldo-Vela, J.P.2    Reed, J.3    Newman, L.P.4    Bean, A.T.5
  • 14
    • 78649510318 scopus 로고    scopus 로고
    • Cytolytic CD4(+) T cells in viral immunity
    • Soghoian DZ, Streeck H, (2010) Cytolytic CD4(+) T cells in viral immunity. Expert Rev Vaccines 9: 1453–1463. doi: 10.1586/erv.10.132 21105780
    • (2010) Expert Rev Vaccines , vol.9 , pp. 1453-1463
    • Soghoian, D.Z.1    Streeck, H.2
  • 16
    • 77950858633 scopus 로고    scopus 로고
    • Cytolytic CD4 cells: Direct mediators in infectious disease and malignancy
    • Brown DM, (2010) Cytolytic CD4 cells: Direct mediators in infectious disease and malignancy. Cell Immunol 262: 89–95. doi: 10.1016/j.cellimm.2010.02.008 20236628
    • (2010) Cell Immunol , vol.262 , pp. 89-95
    • Brown, D.M.1
  • 17
    • 80052686517 scopus 로고    scopus 로고
    • Translation of HLA-HIV associations to the cellular level: HIV adapts to inflate CD8 T cell responses against Nef and HLA-adapted variant epitopes
    • Almeida CA, Bronke C, Roberts SG, McKinnon E, Keane NM, et al. (2011) Translation of HLA-HIV associations to the cellular level: HIV adapts to inflate CD8 T cell responses against Nef and HLA-adapted variant epitopes. J Immunol 187: 2502–2513. doi: 10.4049/jimmunol.1100691 21821798
    • (2011) J Immunol , vol.187 , pp. 2502-2513
    • Almeida, C.A.1    Bronke, C.2    Roberts, S.G.3    McKinnon, E.4    Keane, N.M.5
  • 18
    • 84870659964 scopus 로고    scopus 로고
    • Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1
    • Carlson JM, Brumme CJ, Martin E, Listgarten J, Brockman MA, et al. (2012) Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1. J Virol 86: 13202–13216. doi: 10.1128/JVI.01998-12 23055555
    • (2012) J Virol , vol.86 , pp. 13202-13216
    • Carlson, J.M.1    Brumme, C.J.2    Martin, E.3    Listgarten, J.4    Brockman, M.A.5
  • 19
    • 0037165969 scopus 로고    scopus 로고
    • Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
    • Moore CB, John M, James IR, Christiansen FT, Witt CS, et al. (2002) Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296: 1439–1443. 12029127
    • (2002) Science , vol.296 , pp. 1439-1443
    • Moore, C.B.1    John, M.2    James, I.R.3    Christiansen, F.T.4    Witt, C.S.5
  • 20
    • 33947399689 scopus 로고    scopus 로고
    • Founder effects in the assessment of HIV polymorphisms and HLA allele associations
    • Bhattacharya T, Daniels M, Heckerman D, Foley B, Frahm N, et al. (2007) Founder effects in the assessment of HIV polymorphisms and HLA allele associations. Science 315: 1583–1586. 17363674
    • (2007) Science , vol.315 , pp. 1583-1586
    • Bhattacharya, T.1    Daniels, M.2    Heckerman, D.3    Foley, B.4    Frahm, N.5
  • 21
    • 84884907784 scopus 로고    scopus 로고
    • NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ
    • Karosiene E, Rasmussen M, Blicher T, Lund O, Buus S, et al. (2013) NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ. Immunogenetics 65: 711–724. doi: 10.1007/s00251-013-0720-y 23900783
    • (2013) Immunogenetics , vol.65 , pp. 711-724
    • Karosiene, E.1    Rasmussen, M.2    Blicher, T.3    Lund, O.4    Buus, S.5
  • 22
    • 84879023453 scopus 로고    scopus 로고
    • A strategy to determine HLA class II restriction broadly covering the DR, DP, and DQ allelic variants most commonly expressed in the general population
    • McKinney DM, Southwood S, Hinz D, Oseroff C, Arlehamn CS, et al. (2013) A strategy to determine HLA class II restriction broadly covering the DR, DP, and DQ allelic variants most commonly expressed in the general population. Immunogenetics 65: 357–370. doi: 10.1007/s00251-013-0684-y 23392739
    • (2013) Immunogenetics , vol.65 , pp. 357-370
    • McKinney, D.M.1    Southwood, S.2    Hinz, D.3    Oseroff, C.4    Arlehamn, C.S.5
  • 23
    • 84880286540 scopus 로고    scopus 로고
    • Association of HLA-DRB1-restricted CD4(+) T cell responses with HIV immune control
    • Ranasinghe S, Cutler S, Davis I, Lu R, Soghoian DZ, et al. (2013) Association of HLA-DRB1-restricted CD4(+) T cell responses with HIV immune control. Nat Med 19: 930–933. doi: 10.1038/nm.3229 23793098
    • (2013) Nat Med , vol.19 , pp. 930-933
    • Ranasinghe, S.1    Cutler, S.2    Davis, I.3    Lu, R.4    Soghoian, D.Z.5
  • 24
    • 0037302428 scopus 로고    scopus 로고
    • Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load
    • Addo MM, Yu XG, Rathod A, Cohen D, Eldridge RL, et al. (2003) Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load. J Virol 77: 2081–2092. 12525643
    • (2003) J Virol , vol.77 , pp. 2081-2092
    • Addo, M.M.1    Yu, X.G.2    Rathod, A.3    Cohen, D.4    Eldridge, R.L.5
  • 25
    • 84855396595 scopus 로고    scopus 로고
    • CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control
    • Mothe B, Llano A, Ibarrondo J, Zamarreno J, Schiaulini M, et al. (2012) CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control. PLoS One 7: e29717. doi: 10.1371/journal.pone.0029717 22238642
    • (2012) PLoS One , vol.7 , pp. 29717
    • Mothe, B.1    Llano, A.2    Ibarrondo, J.3    Zamarreno, J.4    Schiaulini, M.5
  • 26
    • 67650581553 scopus 로고    scopus 로고
    • Antigen sensitivity is a major determinant of CD8+ T-cell polyfunctionality and HIV-suppressive activity
    • Almeida JR, Sauce D, Price DA, Papagno L, Shin SY, et al. (2009) Antigen sensitivity is a major determinant of CD8+ T-cell polyfunctionality and HIV-suppressive activity. Blood 113: 6351–6360. doi: 10.1182/blood-2009-02-206557 19389882
    • (2009) Blood , vol.113 , pp. 6351-6360
    • Almeida, J.R.1    Sauce, D.2    Price, D.A.3    Papagno, L.4    Shin, S.Y.5
  • 27
    • 84855927062 scopus 로고    scopus 로고
    • HIV-specific CD4 T cell responses to different viral proteins have discordant associations with viral load and clinical outcome
    • Ranasinghe S, Flanders M, Cutler S, Soghoian DZ, Ghebremichael M, et al. (2012) HIV-specific CD4 T cell responses to different viral proteins have discordant associations with viral load and clinical outcome. J Virol 86: 277–283. doi: 10.1128/JVI.05577-11 22031937
    • (2012) J Virol , vol.86 , pp. 277-283
    • Ranasinghe, S.1    Flanders, M.2    Cutler, S.3    Soghoian, D.Z.4    Ghebremichael, M.5
  • 28
    • 44649102135 scopus 로고    scopus 로고
    • Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
    • Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, et al. (2008) Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci U S A 105: 7552–7557. doi: 10.1073/pnas.0802203105 18490657
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 7552-7557
    • Keele, B.F.1    Giorgi, E.E.2    Salazar-Gonzalez, J.F.3    Decker, J.M.4    Pham, K.T.5
  • 29
    • 67449147145 scopus 로고    scopus 로고
    • The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
    • Goonetilleke N, Liu MK, Salazar-Gonzalez JF, Ferrari G, Giorgi E, et al. (2009) The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J Exp Med 206: 1253–1272. doi: 10.1084/jem.20090365 19487423
    • (2009) J Exp Med , vol.206 , pp. 1253-1272
    • Goonetilleke, N.1    Liu, M.K.2    Salazar-Gonzalez, J.F.3    Ferrari, G.4    Giorgi, E.5
  • 30
    • 66049139947 scopus 로고    scopus 로고
    • Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
    • Salazar-Gonzalez JF, Salazar MG, Keele BF, Learn GH, Giorgi EE, et al. (2009) Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med 206: 1273–1289. doi: 10.1084/jem.20090378 19487424
    • (2009) J Exp Med , vol.206 , pp. 1273-1289
    • Salazar-Gonzalez, J.F.1    Salazar, M.G.2    Keele, B.F.3    Learn, G.H.4    Giorgi, E.E.5
  • 32
    • 0030665257 scopus 로고    scopus 로고
    • Vigorous HIV-1-specific CD4+ T cell responses associated with control of viremia
    • Rosenberg ES, Billingsley JM, Caliendo AM, Boswell SL, Sax PE, et al. (1997) Vigorous HIV-1-specific CD4+ T cell responses associated with control of viremia. Science 278: 1447–1450. 9367954
    • (1997) Science , vol.278 , pp. 1447-1450
    • Rosenberg, E.S.1    Billingsley, J.M.2    Caliendo, A.M.3    Boswell, S.L.4    Sax, P.E.5
  • 33
    • 0036171258 scopus 로고    scopus 로고
    • Magnitude of functional CD8+ T-cell responses to the gag protein of human immunodeficiency virus type 1 correlates inversely with viral load in plasma
    • Edwards BH, Bansal A, Sabbaj S, Bakari J, Mulligan MJ, et al. (2002) Magnitude of functional CD8+ T-cell responses to the gag protein of human immunodeficiency virus type 1 correlates inversely with viral load in plasma. J Virol 76: 2298–2305. 11836408
    • (2002) J Virol , vol.76 , pp. 2298-2305
    • Edwards, B.H.1    Bansal, A.2    Sabbaj, S.3    Bakari, J.4    Mulligan, M.J.5
  • 34
    • 33846101731 scopus 로고    scopus 로고
    • CD8+ T-cell responses to different HIV proteins have discordant associations with viral load
    • Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, et al. (2007) CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nat Med 13: 46–53. 17173051
    • (2007) Nat Med , vol.13 , pp. 46-53
    • Kiepiela, P.1    Ngumbela, K.2    Thobakgale, C.3    Ramduth, D.4    Honeyborne, I.5
  • 35
    • 84857751302 scopus 로고    scopus 로고
    • HIV-specific cytolytic CD4 T cell responses during acute HIV infection predict disease outcome
    • Soghoian DZ, Jessen H, Flanders M, Sierra-Davidson K, Cutler S, et al. (2012) HIV-specific cytolytic CD4 T cell responses during acute HIV infection predict disease outcome. Sci Transl Med 4: 123ra125.
    • (2012) Sci Transl Med , vol.4 , pp. 123-125
    • Soghoian, D.Z.1    Jessen, H.2    Flanders, M.3    Sierra-Davidson, K.4    Cutler, S.5
  • 36
    • 33645284472 scopus 로고    scopus 로고
    • HIV-1-specific CD4+ T-cell responses are not associated with significant viral epitope variation in persons with persistent plasma viremia
    • Koeppe JR, Campbell TB, Rapaport EL, Wilson CC, (2006) HIV-1-specific CD4+ T-cell responses are not associated with significant viral epitope variation in persons with persistent plasma viremia. J Acquir Immune Defic Syndr 41: 140–148. 16394844
    • (2006) J Acquir Immune Defic Syndr , vol.41 , pp. 140-148
    • Koeppe, J.R.1    Campbell, T.B.2    Rapaport, E.L.3    Wilson, C.C.4
  • 37
    • 3543104811 scopus 로고    scopus 로고
    • Beyond help: direct effector functions of human immunodeficiency virus type 1-specific CD4(+) T cells
    • Norris PJ, Moffett HF, Yang OO, Kaufmann DE, Clark MJ, et al. (2004) Beyond help: direct effector functions of human immunodeficiency virus type 1-specific CD4(+) T cells. J Virol 78: 8844–8851. 15280492
    • (2004) J Virol , vol.78 , pp. 8844-8851
    • Norris, P.J.1    Moffett, H.F.2    Yang, O.O.3    Kaufmann, D.E.4    Clark, M.J.5
  • 38
    • 84856876953 scopus 로고    scopus 로고
    • Lack of association between HLA class II alleles and in vitro replication capacities of recombinant viruses encoding HIV-1 subtype C Gag-protease from chronically infected individuals
    • Wright JK, Brumme ZL, Julg B, van der Stok M, Mncube Z, et al. (2012) Lack of association between HLA class II alleles and in vitro replication capacities of recombinant viruses encoding HIV-1 subtype C Gag-protease from chronically infected individuals. J Virol 86: 1273–1276. doi: 10.1128/JVI.06533-11 22090116
    • (2012) J Virol , vol.86 , pp. 1273-1276
    • Wright, J.K.1    Brumme, Z.L.2    Julg, B.3    van der Stok, M.4    Mncube, Z.5
  • 39
    • 16944366524 scopus 로고    scopus 로고
    • Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS
    • Goulder PJ, Phillips RE, Colbert RA, McAdam S, Ogg G, et al. (1997) Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS. Nat Med 3: 212–217. 9018241
    • (1997) Nat Med , vol.3 , pp. 212-217
    • Goulder, P.J.1    Phillips, R.E.2    Colbert, R.A.3    McAdam, S.4    Ogg, G.5
  • 40
    • 84918592939 scopus 로고    scopus 로고
    • Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence
    • Payne R, Muenchhoff M, Mann J, Roberts HE, Matthews P, et al. (2014) Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence. Proc Natl Acad Sci U S A 111: E5393–5400. doi: 10.1073/pnas.1413339111 25453107
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 5393-5400
    • Payne, R.1    Muenchhoff, M.2    Mann, J.3    Roberts, H.E.4    Matthews, P.5
  • 41
    • 76149107149 scopus 로고    scopus 로고
    • CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription
    • Bansal A, Carlson J, Yan J, Akinsiku OT, Schaefer M, et al. (2010) CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription. J Exp Med 207: 51–59. doi: 10.1084/jem.20092060 20065064
    • (2010) J Exp Med , vol.207 , pp. 51-59
    • Bansal, A.1    Carlson, J.2    Yan, J.3    Akinsiku, O.T.4    Schaefer, M.5
  • 42
    • 57149090493 scopus 로고    scopus 로고
    • Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag
    • Carlson JM, Brumme ZL, Rousseau CM, Brumme CJ, Matthews P, et al. (2008) Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. PLoS Comput Biol 4: e1000225. doi: 10.1371/journal.pcbi.1000225 19023406
    • (2008) PLoS Comput Biol , vol.4 , pp. 1000225
    • Carlson, J.M.1    Brumme, Z.L.2    Rousseau, C.M.3    Brumme, C.J.4    Matthews, P.5
  • 43
    • 77949808391 scopus 로고    scopus 로고
    • Human leukocyte antigens and HIV type 1 viral load in early and chronic infection: predominance of evolving relationships
    • Tang J, Malhotra R, Song W, Brill I, Hu L, et al. (2010) Human leukocyte antigens and HIV type 1 viral load in early and chronic infection: predominance of evolving relationships. PLoS One 5: e9629. doi: 10.1371/journal.pone.0009629 20224785
    • (2010) PLoS One , vol.5 , pp. 9629
    • Tang, J.1    Malhotra, R.2    Song, W.3    Brill, I.4    Hu, L.5
  • 44
    • 84902001352 scopus 로고    scopus 로고
    • Induction of Gag-specific CD4 T cell responses during acute HIV infection is associated with improved viral control
    • Schieffer M, Jessen HK, Oster AF, Pissani F, Soghoian DZ, et al. (2014) Induction of Gag-specific CD4 T cell responses during acute HIV infection is associated with improved viral control. J Virol 88: 7357–7366. doi: 10.1128/JVI.00728-14 24741089
    • (2014) J Virol , vol.88 , pp. 7357-7366
    • Schieffer, M.1    Jessen, H.K.2    Oster, A.F.3    Pissani, F.4    Soghoian, D.Z.5
  • 45
    • 80052297041 scopus 로고    scopus 로고
    • The role of HLA-DR-DQ haplotypes in variable antibody responses to anthrax vaccine adsorbed
    • Pajewski NM, Parker SD, Poland GA, Ovsyannikova IG, Song W, et al. (2011) The role of HLA-DR-DQ haplotypes in variable antibody responses to anthrax vaccine adsorbed. Genes Immun 12: 457–465. doi: 10.1038/gene.2011.15 21368772
    • (2011) Genes Immun , vol.12 , pp. 457-465
    • Pajewski, N.M.1    Parker, S.D.2    Poland, G.A.3    Ovsyannikova, I.G.4    Song, W.5
  • 46
    • 84864839072 scopus 로고    scopus 로고
    • Protocol for analyzing human leukocyte antigen variants and sexually transmitted infections: from genotyping to immunoassays
    • Tang J, Bansal A, (2012) Protocol for analyzing human leukocyte antigen variants and sexually transmitted infections: from genotyping to immunoassays. Methods Mol Biol 903: 359–380. doi: 10.1007/978-1-61779-937-2_25 22782832
    • (2012) Methods Mol Biol , vol.903 , pp. 359-380
    • Tang, J.1    Bansal, A.2
  • 47
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307–321. doi: 10.1093/sysbio/syq010 20525638
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 48
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R, (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440–9445. 12883005
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 49
    • 80052971466 scopus 로고    scopus 로고
    • Interleukin-2 production by polyfunctional HIV-1-specific CD8 T cells is associated with enhanced viral suppression
    • Akinsiku OT, Bansal A, Sabbaj S, Heath SL, Goepfert PA, (2011) Interleukin-2 production by polyfunctional HIV-1-specific CD8 T cells is associated with enhanced viral suppression. J Acquir Immune Defic Syndr 58: 132–140. doi: 10.1097/QAI.0b013e318224d2e9 21637109
    • (2011) J Acquir Immune Defic Syndr , vol.58 , pp. 132-140
    • Akinsiku, O.T.1    Bansal, A.2    Sabbaj, S.3    Heath, S.L.4    Goepfert, P.A.5
  • 50
    • 45749099294 scopus 로고    scopus 로고
    • Multifunctional T-cell characteristics induced by a polyvalent DNA prime/protein boost human immunodeficiency virus type 1 vaccine regimen given to healthy adults are dependent on the route and dose of administration
    • Bansal A, Jackson B, West K, Wang S, Lu S, et al. (2008) Multifunctional T-cell characteristics induced by a polyvalent DNA prime/protein boost human immunodeficiency virus type 1 vaccine regimen given to healthy adults are dependent on the route and dose of administration. J Virol 82: 6458–6469. doi: 10.1128/JVI.00068-08 18448544
    • (2008) J Virol , vol.82 , pp. 6458-6469
    • Bansal, A.1    Jackson, B.2    West, K.3    Wang, S.4    Lu, S.5
  • 51
    • 33746150392 scopus 로고    scopus 로고
    • Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes
    • Rousseau CM, Birditt BA, McKay AR, Stoddard JN, Lee TC, et al. (2006) Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes. J Virol Methods 136: 118–125. 16701907
    • (2006) J Virol Methods , vol.136 , pp. 118-125
    • Rousseau, C.M.1    Birditt, B.A.2    McKay, A.R.3    Stoddard, J.N.4    Lee, T.C.5
  • 52
    • 84863651532 scopus 로고    scopus 로고
    • Hybrid error correction and de novo assembly of single-molecule sequencing reads
    • Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, et al. (2012) Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotechnol 30: 693–700. doi: 10.1038/nbt.2280 22750884
    • (2012) Nat Biotechnol , vol.30 , pp. 693-700
    • Koren, S.1    Schatz, M.C.2    Walenz, B.P.3    Martin, J.4    Howard, J.T.5
  • 53
    • 84880798154 scopus 로고    scopus 로고
    • Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
    • Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, et al. (2013) Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10: 563–569. doi: 10.1038/nmeth.2474 23644548
    • (2013) Nat Methods , vol.10 , pp. 563-569
    • Chin, C.S.1    Alexander, D.H.2    Marks, P.3    Klammer, A.A.4    Drake, J.5
  • 54
    • 84857830668 scopus 로고    scopus 로고
    • Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages
    • Ochsenbauer C, Edmonds TG, Ding H, Keele BF, Decker J, et al. (2012) Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages. J Virol 86: 2715–2728. doi: 10.1128/JVI.06157-11 22190722
    • (2012) J Virol , vol.86 , pp. 2715-2728
    • Ochsenbauer, C.1    Edmonds, T.G.2    Ding, H.3    Keele, B.F.4    Decker, J.5
  • 55
    • 84883404887 scopus 로고    scopus 로고
    • Selective induction of CTL helper rather than killer activity by natural epitope variants promotes dendritic cell-mediated HIV-1 dissemination
    • Mailliard RB, Smith KN, Fecek RJ, Rappocciolo G, Nascimento EJ, et al. (2013) Selective induction of CTL helper rather than killer activity by natural epitope variants promotes dendritic cell-mediated HIV-1 dissemination. J Immunol 191: 2570–2580. doi: 10.4049/jimmunol.1300373 23913962
    • (2013) J Immunol , vol.191 , pp. 2570-2580
    • Mailliard, R.B.1    Smith, K.N.2    Fecek, R.J.3    Rappocciolo, G.4    Nascimento, E.J.5
  • 56
    • 67649849924 scopus 로고    scopus 로고
    • Gag- and Nef-specific CD4+ T cells recognize and inhibit SIV replication in infected macrophages early after infection
    • Sacha JB, Giraldo-Vela JP, Buechler MB, Martins MA, Maness NJ, et al. (2009) Gag- and Nef-specific CD4+ T cells recognize and inhibit SIV replication in infected macrophages early after infection. Proc Natl Acad Sci U S A 106: 9791–9796. doi: 10.1073/pnas.0813106106 19478057
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 9791-9796
    • Sacha, J.B.1    Giraldo-Vela, J.P.2    Buechler, M.B.3    Martins, M.A.4    Maness, N.J.5


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