메뉴 건너뛰기




Volumn 111, Issue 50, 2014, Pages E5393-E5400

Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence

(20)  Payne, Rebecca a   Muenchhoff, Maximilian a   Mann, Jaclyn b   Roberts, Hannah E c,d   Matthews, Philippa a   Adland, Emily a   Hempenstal, Allison a   Huang, Kuan Hsiang c,d   Brockman, Mark e,f   Brumme, Zabrina e,f   Sinclair, Marc a   Miura, Toshiyuki g   Frater, John c,d,h   Essex, Myron i,j   Shapiro, Roger i,j   Walker, Bruce D b,k   Ndung'u, Thumbi b,k   McLean, Angela R c,l   Carlson, Jonathan M m   Goulder, Philip J R a,b  


Author keywords

[No Author keywords available]

Indexed keywords

HLA ANTIGEN; HLA B ANTIGEN; HLA B39 ANTIGEN; HLA B42 ANTIGEN; HLA B57 ANTIGEN; HLA B58 ANTIGEN; HLA B81 ANTIGEN; NEVIRAPINE; UNCLASSIFIED DRUG; VIRUS RNA; ZIDOVUDINE;

EID: 84918592939     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1413339111     Document Type: Article
Times cited : (81)

References (54)
  • 1
    • 0035967960 scopus 로고    scopus 로고
    • The Leeuwenhoek Lecture 2001. Animal origins of human infectious disease
    • Weiss RA (2001) The Leeuwenhoek Lecture 2001. Animal origins of human infectious disease. Philos Trans R Soc Lond B Biol Sci 356(1410):957-977.
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , Issue.1410 , pp. 957-977
    • Weiss, R.A.1
  • 3
    • 0034732201 scopus 로고    scopus 로고
    • Viral load and heterosexual transmission of human immunodeficiency virus type 1
    • Quinn TC, et al.; Rakai Project Study Group (2000) Viral load and heterosexual transmission of human immunodeficiency virus type 1. N Engl J Med 342(13):921-929.
    • (2000) N Engl J Med , vol.342 , Issue.13 , pp. 921-929
    • Quinn, T.C.1
  • 4
    • 0030070991 scopus 로고    scopus 로고
    • Prognosis in HIV-1 infection predicted by the quantity of virus in plasma
    • Mellors JW, et al. (1996) Prognosis in HIV-1 infection predicted by the quantity of virus in plasma. Science 272(5265):1167-1170.
    • (1996) Science , vol.272 , Issue.5265 , pp. 1167-1170
    • Mellors, J.W.1
  • 5
    • 36849064140 scopus 로고    scopus 로고
    • Variation in HIV-1 set-point viral load: Epidemiological analysis and an evolutionary hypothesis
    • Fraser C, Hollingsworth TD, Chapman R, de Wolf F, Hanage WP (2007) Variation in HIV-1 set-point viral load: Epidemiological analysis and an evolutionary hypothesis. Proc Natl Acad Sci USA 104(44):17441-17446.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.44 , pp. 17441-17446
    • Fraser, C.1    Hollingsworth, T.D.2    Chapman, R.3    De Wolf, F.4    Hanage, W.P.5
  • 6
    • 84155168018 scopus 로고    scopus 로고
    • Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission
    • Herbeck JT, et al. (2012) Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS 26(2):193-205.
    • (2012) AIDS , vol.26 , Issue.2 , pp. 193-205
    • Herbeck, J.T.1
  • 7
    • 43549109265 scopus 로고    scopus 로고
    • Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients
    • Goepfert PA, et al. (2008) Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients. J Exp Med 205(5):1009-1017.
    • (2008) J Exp Med , vol.205 , Issue.5 , pp. 1009-1017
    • Goepfert, P.A.1
  • 8
    • 84870786421 scopus 로고    scopus 로고
    • Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV-1 pathogenesis
    • Prince JL, et al. (2012) Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV-1 pathogenesis. PLoS Pathog 8(11):e1003041.
    • (2012) PLoS Pathog , vol.8 , Issue.11 , pp. e1003041
    • Prince, J.L.1
  • 9
    • 84866490075 scopus 로고    scopus 로고
    • HIV and HLA class I: An evolving relationship
    • Goulder PJR, Walker BD (2012) HIV and HLA class I: An evolving relationship. Immunity 37(3):426-440.
    • (2012) Immunity , vol.37 , Issue.3 , pp. 426-440
    • Goulder, P.J.R.1    Walker, B.D.2
  • 10
    • 33645240933 scopus 로고    scopus 로고
    • Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1
    • Martinez-Picado J, et al. (2006) Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. J Virol 80(7):3617-3623.
    • (2006) J Virol , vol.80 , Issue.7 , pp. 3617-3623
    • Martinez-Picado, J.1
  • 11
    • 85047684409 scopus 로고    scopus 로고
    • Evolution of HLA-B∗5703 HIV-1 escape mutations in HLA-B∗5703-positive individuals and their transmission recipients
    • Crawford H, et al. (2009) Evolution of HLA-B∗5703 HIV-1 escape mutations in HLA-B∗5703-positive individuals and their transmission recipients. J Exp Med 206(4):909-921.
    • (2009) J Exp Med , vol.206 , Issue.4 , pp. 909-921
    • Crawford, H.1
  • 12
    • 84875527661 scopus 로고    scopus 로고
    • Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins
    • Boutwell CL, et al. (2013) Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins. J Virol 87(7):3952-3965.
    • (2013) J Virol , vol.87 , Issue.7 , pp. 3952-3965
    • Boutwell, C.L.1
  • 13
    • 63949087100 scopus 로고    scopus 로고
    • Adaptation of HIV-1 to human leukocyte antigen class I
    • Kawashima Y, et al. (2009) Adaptation of HIV-1 to human leukocyte antigen class I. Nature 458(7238):641-645.
    • (2009) Nature , vol.458 , Issue.7238 , pp. 641-645
    • Kawashima, Y.1
  • 14
    • 84873042035 scopus 로고    scopus 로고
    • Significant reductions in Gag-protease-mediated HIV-1 replication capacity during the course of the epidemic in Japan
    • Nomura S, et al. (2013) Significant reductions in Gag-protease-mediated HIV-1 replication capacity during the course of the epidemic in Japan. J Virol 87(3):1465-1476.
    • (2013) J Virol , vol.87 , Issue.3 , pp. 1465-1476
    • Nomura, S.1
  • 15
    • 77954059111 scopus 로고    scopus 로고
    • HIV-1 transmitting couples have similar viral load setpoints in Rakai, Uganda
    • Hollingsworth TD, et al. (2010) HIV-1 transmitting couples have similar viral load setpoints in Rakai, Uganda. PLoS Pathog 6(5):e1000876.
    • (2010) PLoS Pathog , vol.6 , Issue.5 , pp. e1000876
    • Hollingsworth, T.D.1
  • 16
    • 77950927522 scopus 로고    scopus 로고
    • HIV RNA level in early infection is predicted by viral load in the transmission source
    • Hecht FM, et al. (2010) HIV RNA level in early infection is predicted by viral load in the transmission source. AIDS 24(7):941-945.
    • (2010) AIDS , vol.24 , Issue.7 , pp. 941-945
    • Hecht, F.M.1
  • 17
    • 77957194223 scopus 로고    scopus 로고
    • Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: Associations with HLA type and clinical parameters
    • Wright JK, et al. (2010) Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: Associations with HLA type and clinical parameters. J Virol 84(20):10820-10831.
    • (2010) J Virol , vol.84 , Issue.20 , pp. 10820-10831
    • Wright, J.K.1
  • 18
    • 58149398654 scopus 로고    scopus 로고
    • HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1
    • Miura T, et al. (2009) HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1. J Virol 83(1):140-149.
    • (2009) J Virol , vol.83 , Issue.1 , pp. 140-149
    • Miura, T.1
  • 19
    • 78049495989 scopus 로고    scopus 로고
    • Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection
    • Brockman MA, et al. (2010) Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection. J Virol 84(22):11937-11949.
    • (2010) J Virol , vol.84 , Issue.22 , pp. 11937-11949
    • Brockman, M.A.1
  • 20
    • 79955533328 scopus 로고    scopus 로고
    • Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations
    • Huang KH, et al.; Bloemfontein-Oxford Collaborative Group (2011) Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. PLoS ONE 6(4):e19018.
    • (2011) PLoS ONE , vol.6 , Issue.4 , pp. e19018
    • Huang, K.H.1
  • 21
    • 84905491726 scopus 로고    scopus 로고
    • Available at Accessed July 1, 2014
    • World Health Organization (2014) Consolidated ARV guidelines 2013. Available at www.who.int/hiv/pub/guidelines/arv2013/art/statartadolescents-rationale/en/index.htm. Accessed July 1, 2014.
    • (2014) Consolidated ARV Guidelines 2013
    • World Health Organization1
  • 22
    • 80051633217 scopus 로고    scopus 로고
    • Prevention of HIV-1 infection with early antiretroviral therapy
    • Cohen MS, et al.; HPTN 052 Study Team (2011) Prevention of HIV-1 infection with early antiretroviral therapy. N Engl J Med 365(6):493-505.
    • (2011) N Engl J Med , vol.365 , Issue.6 , pp. 493-505
    • Cohen, M.S.1
  • 23
    • 84904915806 scopus 로고    scopus 로고
    • Global update on HIV treatment 2013
    • Available at Accessed July 1, 2014
    • WHO Report in partnership with UNICEF and UNAIDS (2013) Global update on HIV treatment 2013. Available at apps.who.int/iris/bitstream/10665/85326/1/9789241505734-eng.pdf. Accessed July 1, 2014.
    • (2013) WHO Report in Partnership with UNICEF and UNAIDS
  • 24
    • 84918525070 scopus 로고    scopus 로고
    • Available at Accessed July 1, 2014
    • AVERT (2014) HIV & AIDS in South Africa. Available at www.avert.org/hiv-aids-southafrica.htm. Accessed July 1, 2014.
    • (2014) HIV & AIDS in South Africa
  • 25
    • 85067711777 scopus 로고    scopus 로고
    • Available at . Accessed July 1, 2014
    • The World Bank (2014) Data. Available at data.worldbank.org. Accessed July 1, 2014.
    • (2014)
    • The World Bank1
  • 26
    • 84861325273 scopus 로고    scopus 로고
    • Widespread impact of HLA restriction on immune control and escape pathways of HIV-1
    • Carlson JM, et al. (2012) Widespread impact of HLA restriction on immune control and escape pathways of HIV-1. J Virol 86(9):5230-5243.
    • (2012) J Virol , vol.86 , Issue.9 , pp. 5230-5243
    • Carlson, J.M.1
  • 27
    • 10644267588 scopus 로고    scopus 로고
    • Dominant influence of HLA-B in mediating the potential coevolution of HIV and HLA
    • Kiepiela P, et al. (2004) Dominant influence of HLA-B in mediating the potential coevolution of HIV and HLA. Nature 432(7018):769-775.
    • (2004) Nature , vol.432 , Issue.7018 , pp. 769-775
    • Kiepiela, P.1
  • 28
    • 77956827161 scopus 로고    scopus 로고
    • Additive contribution of HLA class I alleles in the immune control of HIV-1 infection
    • Leslie A, et al. (2010) Additive contribution of HLA class I alleles in the immune control of HIV-1 infection. J Virol 84(19):9879-9888.
    • (2010) J Virol , vol.84 , Issue.19 , pp. 9879-9888
    • Leslie, A.1
  • 29
    • 48749103238 scopus 로고    scopus 로고
    • Impact of MHC class I diversity on immune control of immunodeficiency virus replication
    • Goulder PJR, Watkins DI (2008) Impact of MHC class I diversity on immune control of immunodeficiency virus replication. Nat Rev Immunol 8(8):619-630.
    • (2008) Nat Rev Immunol , vol.8 , Issue.8 , pp. 619-630
    • Goulder, P.J.R.1    Watkins, D.I.2
  • 30
    • 50149117938 scopus 로고    scopus 로고
    • Central role of reverting mutations in HLA associations with human immunodeficiency virus set point
    • Matthews PC, et al. (2008) Central role of reverting mutations in HLA associations with human immunodeficiency virus set point. J Virol 82(17):8548-8559.
    • (2008) J Virol , vol.82 , Issue.17 , pp. 8548-8559
    • Matthews, P.C.1
  • 31
    • 72849140105 scopus 로고    scopus 로고
    • Replicative capacity of human immunodeficiency virus type 1 transmitted from mother to child is associated with pediatric disease progression rate
    • Prado JG, et al. (2010) Replicative capacity of human immunodeficiency virus type 1 transmitted from mother to child is associated with pediatric disease progression rate. J Virol 84(1):492-502.
    • (2010) J Virol , vol.84 , Issue.1 , pp. 492-502
    • Prado, J.G.1
  • 32
    • 0344845200 scopus 로고    scopus 로고
    • Gradual adaptation of HIV to human host populations: Good or bad news?
    • Brander C, Walker BD (2003) Gradual adaptation of HIV to human host populations: Good or bad news? Nat Med 9(11):1359-1362.
    • (2003) Nat Med , vol.9 , Issue.11 , pp. 1359-1362
    • Brander, C.1    Walker, B.D.2
  • 33
    • 64049111619 scopus 로고    scopus 로고
    • Transmission and long-term stability of compensated CD8 escape mutations
    • Schneidewind A, et al. (2009) Transmission and long-term stability of compensated CD8 escape mutations. J Virol 83(8):3993-3997.
    • (2009) J Virol , vol.83 , Issue.8 , pp. 3993-3997
    • Schneidewind, A.1
  • 34
    • 34547138161 scopus 로고    scopus 로고
    • Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B∗5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection
    • Crawford H, et al. (2007) Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B∗5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection. J Virol 81(15):8346-8351.
    • (2007) J Virol , vol.81 , Issue.15 , pp. 8346-8351
    • Crawford, H.1
  • 35
    • 79251491677 scopus 로고    scopus 로고
    • Modelling the evolution and spread of HIV immune escape mutants
    • Fryer HR, et al.; SPARTAC Trial Investigators (2010) Modelling the evolution and spread of HIV immune escape mutants. PLoS Pathog 6(11):e1001196.
    • (2010) PLoS Pathog , vol.6 , Issue.11 , pp. e1001196
    • Fryer, H.R.1
  • 36
    • 80052396244 scopus 로고    scopus 로고
    • Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic
    • Schellens IM, et al. (2011) Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic. AIDS 25(14):1691-1700.
    • (2011) AIDS , vol.25 , Issue.14 , pp. 1691-1700
    • Schellens, I.M.1
  • 37
    • 84901335748 scopus 로고    scopus 로고
    • Genotypic and functional impact of HIV-1 adaptation to its host population during the North American epidemic
    • Cotton LA, et al. (2014) Genotypic and functional impact of HIV-1 adaptation to its host population during the North American epidemic. PLoS Genet 10(4):e1004295.
    • (2014) PLoS Genet , vol.10 , Issue.4 , pp. e1004295
    • Cotton, L.A.1
  • 38
    • 79551672781 scopus 로고    scopus 로고
    • Available at Accessed July 1, 2014
    • UNAIDS (2013) Global Report: UNAIDS report on the global AIDS epidemic 2013. Available at www.unaids.org/en/media/unaids/contentassets/documents/epidemiology/2013/gr2013/UNAIDS-Global-Report-2013-en.pdf. Accessed July 1, 2014.
    • (2013) Global Report: UNAIDS Report on the Global AIDS Epidemic 2013
    • UNAIDS1
  • 39
    • 84860725970 scopus 로고    scopus 로고
    • Access to antiretroviral treatment in South Africa, 2004-2011
    • Johnson LF (2012) Access to antiretroviral treatment in South Africa, 2004-2011. South Afr J HIV Med 13(1):22-26.
    • (2012) South Afr J HIV Med , vol.13 , Issue.1 , pp. 22-26
    • Johnson, L.F.1
  • 40
    • 20244368227 scopus 로고    scopus 로고
    • Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda
    • Wawer MJ, et al. (2005) Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda. J Infect Dis 191(9):1403-1409.
    • (2005) J Infect Dis , vol.191 , Issue.9 , pp. 1403-1409
    • Wawer, M.J.1
  • 41
    • 84859729459 scopus 로고    scopus 로고
    • Concurrent partnerships, acute infection and HIV epidemic dynamics among young adults in Zimbabwe
    • Goodreau SM, et al. (2012) Concurrent partnerships, acute infection and HIV epidemic dynamics among young adults in Zimbabwe. AIDS Behav 16(2):312-322.
    • (2012) AIDS Behav , vol.16 , Issue.2 , pp. 312-322
    • Goodreau, S.M.1
  • 42
    • 82755164385 scopus 로고    scopus 로고
    • Role of acute infection in HIV transmission - Authors' reply
    • Powers KA, et al. (2011) Role of acute infection in HIV transmission - Authors' reply. Lancet 378:1914.
    • (2011) Lancet , vol.378 , pp. 1914
    • Powers, K.A.1
  • 43
    • 0035857959 scopus 로고    scopus 로고
    • Probability of HIV-1 transmission per coital act in monogamous, heterosexual, HIV-1-discordant couples in Rakai, Uganda
    • Gray RH, et al.; Rakai Project Team (2001) Probability of HIV-1 transmission per coital act in monogamous, heterosexual, HIV-1-discordant couples in Rakai, Uganda. Lancet 357(9263):1149-1153.
    • (2001) Lancet , vol.357 , Issue.9263 , pp. 1149-1153
    • Gray, R.H.1
  • 44
    • 33846101731 scopus 로고    scopus 로고
    • CD8+ T-cell responses to different HIV proteins have discordant associations with viral load
    • Kiepiela P, et al. (2007) CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nat Med 13(1):46-53.
    • (2007) Nat Med , vol.13 , Issue.1 , pp. 46-53
    • Kiepiela, P.1
  • 45
    • 79956209349 scopus 로고    scopus 로고
    • HLA-A∗7401-mediated control of HIV viremia is independent of its linkage disequilibrium with HLA-B∗5703
    • Matthews PC, et al. (2011) HLA-A∗7401-mediated control of HIV viremia is independent of its linkage disequilibrium with HLA-B∗5703. J Immunol 186(10):5675-5686.
    • (2011) J Immunol , vol.186 , Issue.10 , pp. 5675-5686
    • Matthews, P.C.1
  • 46
    • 77953725982 scopus 로고    scopus 로고
    • Antiretroviral regimens in pregnancy and breast-feeding in Botswana
    • Shapiro RL, et al. (2010) Antiretroviral regimens in pregnancy and breast-feeding in Botswana. N Engl J Med 362(24):2282-2294.
    • (2010) N Engl J Med , vol.362 , Issue.24 , pp. 2282-2294
    • Shapiro, R.L.1
  • 47
    • 34247203565 scopus 로고    scopus 로고
    • Common and well-documented HLA alleles: Report of the Ad-Hoc committee of the american society for histocompatiblity and immunogenetics
    • Cano P, et al. (2007) Common and well-documented HLA alleles: Report of the Ad-Hoc committee of the american society for histocompatiblity and immunogenetics. Hum Immunol 68(5):392-417.
    • (2007) Hum Immunol , vol.68 , Issue.5 , pp. 392-417
    • Cano, P.1
  • 48
    • 20244373940 scopus 로고    scopus 로고
    • Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA
    • Leslie A, et al. (2005) Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA. J Exp Med 201(6):891-902.
    • (2005) J Exp Med , vol.201 , Issue.6 , pp. 891-902
    • Leslie, A.1
  • 49
    • 57149090493 scopus 로고    scopus 로고
    • Phylogenetic dependency networks: Inferring patterns of CTL escape and codon covariation in HIV-1 Gag
    • Carlson JM, et al. (2008) Phylogenetic dependency networks: Inferring patterns of CTL escape and codon covariation in HIV-1 Gag. PLOS Comput Biol 4(11):e1000225.
    • (2008) PLOS Comput Biol , vol.4 , Issue.11 , pp. e1000225
    • Carlson, J.M.1
  • 50
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100(16):9440-9445.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.16 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 52
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59(3):307-321.
    • (2010) Syst Biol , vol.59 , Issue.3 , pp. 307-321
    • Guindon, S.1
  • 53
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: Hypothesis testing using phylogenies
    • Pond SL, Frost SD, Muse SV (2005) HyPhy: Hypothesis testing using phylogenies. Bioinformatics 21:676-679.
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.1    Frost, S.D.2    Muse, S.V.3
  • 54
    • 77953156810 scopus 로고    scopus 로고
    • Solving differential equations in R: Package deSolve
    • Soetaert K, Petzoldt T, Setzer R (2010) Solving differential equations in R: Package deSolve. J Stat Softw 33(9):1-25.
    • (2010) J Stat Softw , vol.33 , Issue.9 , pp. 1-25
    • Soetaert, K.1    Petzoldt, T.2    Setzer, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.