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note
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The HIV-1-specific proliferative responses to p24 were tested 12 times over 24 months, with Sls ranging from 38 to 465 (mean, 134).
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note
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3 (<400 copies/ml).
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note
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Lymphocyte proliferation assays were performed as described in Fig. 1. Concentration of p24 was titrated to determine the lowest amount of antigen required to stimulate a p24-specific lymphocyte proliferative response. For subject 161-J, a p24 concentration of 0.05 μg/ml still elicited a response, whereas for subject CTS-01, the response was lost at concentrations <0.5 μg/ml.
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6 cells/ml in 24 replicate wells of 96-well U-bottom microtiter plates in the presence of HIV-1 p24, and in 12 replicate wells in the presence of control proteins. Plates were incubated and harvested as described in Fig. 1. For each cell concentration, the fraction of nonresponding wells was determined to be the fraction of wells with fewer counts per minute than the mean plus three standard deviations for the 12 control wells. Activated cell frequency was determined by the maximum likelihood method (10).
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Single-letter abbreviations for the amino acid residues are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly; H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; and Y, Tyr.
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40
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note
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Three p24 peptides were recognized by both individuals with SI > 10: residues 163 to 184 (AFSPEVIPMFSALSEGATPQDL), 243 to 264 (LQECHGWMTNNPPIFVGEIYKR), and 263 to 284 (KRWIILGLNKIVRMYSPTSILD).
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note
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PBMC from seronegative persons resulted in SI < 3 for all p24 peptides.
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note
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The diagnosis was made on the basis of a negative HIV-1/2 enzyme immunoassay (Abbott Laboratories, Abbott Park, IL), the presence of HIV-1 viral RNA (AMPLICOR HIV MONITOR TEST, Roche Diagnostic Systems, Branchberg, NJ), and subsequent seroconversion documented by both HIV-1/2 enzyme immunoassay and protein immunoblot (Abbott Laboratories). Proliferation assays were performed at baseline (before initiation of antiviral therapy) and at designated intervals during therapy, with the use of baculovirus-derived p24 antigen at 5 μg/ml.
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3H]-thymidine at 1.0 μCi per well, and uptake was measured 6 hours later with a scintillation counter (Packard Topcount, Packard Instruments, Meriden, CT). The HIV-1 p24 and gp160 proteins (Protein Science, Meriden, CT) are recombinant proteins derived from the gag or env gene of HIV-1 (NY-5 and LAV strains, respectively) produced in a baculovirus expression system and demonstrated 90 to 95% purity. These proteins were tested over a range of concentrations, with 0.5 μg/ml as the standard concentration. A mixture of baculovirus proteins was used as a control antigen at 0.015 μg/ml (equal to the baculovirus antigen concentration in the recombinant proteins), with comparable results obtained at 1.5 μg/ml. Yeast-and CHO-derived HIV-1 proteins were provided by Chiron (Emeryville, CA). The yeast-derived p24 Gag protein (residues 139 to 369) is recombinantly derived in a yeast expression system using the HIV-1 strain SF2. The gp120 was derived from HIV-SF2 expressed in CHO cells. These proteins demonstrated >90 and 94.8% purity, respectively. Each protein was used at a concentration of 0.5 μg/ml, and preparations of CHO and yeast proteins were used as controls for these antigens at 0.5 μg/ml. Tetanus toxoid (Connaught Laboratories, Willowdale, Ontario, Canada) was used at 2 μg/ml. For the recombinant HIV-1 proteins, a stimulation index (SI) was defined as the ratio of the mean counts per minute (CPM) of the HIV-1 protein wells to the mean CPM of the control protein wells. For tetanus toxoid, SI was defined as the ratio of the mean CPM of the stimulated wells to the mean CPM of six control wells containing PBMC and medium alone. For assays using CD4-or CDS-depleted PBMC, cells were cultured as described above in the presence of γ-irradiated (40 Gy) autologous PBMC and antigen.
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We thank D. K. H. Wong for help and advice with statistical analysis, M. Hirsch , D. Cotton, V. Young, and C. Hay for review of manuscript, T. Flynn and L. Larosa for help with patients, and D. J. Ruhl for technical help. This project was supported by NIH grants R01-A128568, F32-A109738, R01-A136550, U19-A136611, and UO1-AI41531.
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