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Volumn 5, Issue JAN, 2015, Pages

The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng

Author keywords

Chloroplast genome; Comparative genomics; Minor allele; Panax ginseng; SNP

Indexed keywords

PANAX GINSENG;

EID: 84940688271     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2014.00696     Document Type: Article
Times cited : (110)

References (64)
  • 1
    • 84872131641 scopus 로고    scopus 로고
    • Extent of linkage disequilibrium in the domestic cat, Felis sil-vestris catus, and its breeds
    • Alhaddad, H., Khan, R., Grahn, R. A., Gandolfi, B., Mullikin, J. C., Cole, S. A., et al. (2013). Extent of linkage disequilibrium in the domestic cat, Felis sil-vestris catus, and its breeds. PLoS ONE 8:e53537. doi: 10.1371/journal.pone.0053537
    • (2013) Plos ONE , vol.8
    • Alhaddad, H.1    Khan, R.2    Grahn, R.A.3    Gandolfi, B.4    Mullikin, J.C.5    Cole, S.A.6
  • 2
    • 0035671887 scopus 로고    scopus 로고
    • The inheritance of genes in mitochondria and chloro-plasts: Laws, mechanisms, and models
    • Birky, C. J. (2001). The inheritance of genes in mitochondria and chloro-plasts: laws, mechanisms, and models. Annu. Rev. Genet. 35, 125-148. doi: 10.1146/annurev.genet.35.102401.090231
    • (2001) Annu. Rev. Genet , vol.35 , pp. 125-148
    • Birky, C.J.1
  • 3
    • 56849133310 scopus 로고    scopus 로고
    • Patterns of evolutionary constraints on genes in humans
    • De, S., Lopez-Bigas, N., and Teichmann, S. A. (2008). Patterns of evolutionary constraints on genes in humans. BMC Evol. Biol. 8:275. doi: 10.1186/14712148-8-275
    • (2008) BMC Evol. Biol , vol.8 , pp. 275
    • De, S.1    Lopez-Bigas, N.2    Teichmann, S.A.3
  • 4
    • 84885788716 scopus 로고    scopus 로고
    • Complete chloroplast genome of Sedum sarmentosum and chloroplast genome evolution in Saxifragales
    • Dong, W., Xu, C., Cheng, T., and Zhou, S. (2013). Complete chloroplast genome of Sedum sarmentosum and chloroplast genome evolution in Saxifragales. PLoS ONE 8:e77965. doi: 10.1371/journal.pone.0077965
    • (2013) Plos ONE , vol.8
    • Dong, W.1    Xu, C.2    Cheng, T.3    Zhou, S.4
  • 5
    • 79954605059 scopus 로고    scopus 로고
    • The complete chloroplast genome of 17 individuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies
    • Doorduin, L., Gravendeel, B., Lammers, Y., Ariyurek, Y., Chin-A-Woeng, T., and Vrieling, K. (2011). The complete chloroplast genome of 17 individuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies. DNA Res. 18, 93-105. doi: 10.1093/dnares/dsr002
    • (2011) DNA Res , vol.18 , pp. 93-105
    • Doorduin, L.1    Gravendeel, B.2    Lammers, Y.3    Ariyurek, Y.4    Chin-A-Woeng, T.5    Vrieling, K.6
  • 6
    • 0342859301 scopus 로고    scopus 로고
    • The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes
    • Drescher, A., Ruf, S., Calsa, T. J., Carrer, H., and Bock, R. (2000). The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes. Plant J. 22, 97-104. doi: 10.1046/j.1365-313x.2000.00722.x
    • (2000) Plant J , vol.22 , pp. 97-104
    • Drescher, A.1    Ruf, S.2    Calsa, T.J.3    Carrer, H.4    Bock, R.5
  • 7
    • 84876911176 scopus 로고    scopus 로고
    • Ginsenoside Re reduces insulin resistance through activation of PPAR-gamma pathway and inhibition of TNF-alpha production
    • Gao, Y., Yang, M. F., Su, Y. P., Jiang, H. M., You, X. J., Yang, Y. J., et al. (2013). Ginsenoside Re reduces insulin resistance through activation of PPAR-gamma pathway and inhibition of TNF-alpha production. J. Ethnopharmacol. 147, 509-516. doi: 10.1016/j.jep.2013.03.057
    • (2013) J. Ethnopharmacol , vol.147 , pp. 509-516
    • Gao, Y.1    Yang, M.F.2    Su, Y.P.3    Jiang, H.M.4    You, X.J.5    Yang, Y.J.6
  • 9
    • 0029905884 scopus 로고    scopus 로고
    • Ebb and flow of the chloroplast inverted repeat. Mol. Gen
    • Goulding, S. E., Olmstead, R. G., Morden, C. W., and Wolfe, K. H. (1996). Ebb and flow of the chloroplast inverted repeat. Mol. Gen. Genet. 252, 195-206. doi: 10.1007/BF02173220
    • (1996) Genet , vol.252 , pp. 195-206
    • Goulding, S.E.1    Olmstead, R.G.2    Morden, C.W.3    Wolfe, K.H.4
  • 10
    • 84867808129 scopus 로고    scopus 로고
    • Genetic diversity and population structure: Implications for conservation of wild soybean (Glycine soja Sieb et Zucc) based on nuclear and chloroplast microsatellite variation
    • He, S., Wang, Y., Volis, S., Li, D., and Yi, T. (2012). Genetic diversity and population structure: implications for conservation of wild soybean (Glycine soja Sieb. et Zucc) based on nuclear and chloroplast microsatellite variation. Int. J. Mol. Sci. 13, 12608-12628. doi: 10.3390/ijms131012608
    • (2012) Int. J. Mol. Sci , vol.13 , pp. 12608-12628
    • He, S.1    Wang, Y.2    Volis, S.3    Li, D.4    Yi, T.5
  • 11
    • 84877283169 scopus 로고    scopus 로고
    • Genetic structure and domestication of carrot (Daucus carota subsp sativus) (Apiaceae)
    • Iorizzo, M., Senalik, D. A., Ellison, S. L., Grzebelus, D., Cavagnaro, P. F., Allender, C., et al. (2013). Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae). Am. J. Bot. 100, 930-938. doi: 10.3732/ajb.1300055
    • (2013) Am. J. Bot , vol.100 , pp. 930-938
    • Iorizzo, M.1    Senalik, D.A.2    Ellison, S.L.3    Grzebelus, D.4    Cavagnaro, P.F.5    Allender, C.6
  • 12
    • 84862230226 scopus 로고    scopus 로고
    • De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome
    • Iorizzo, M., Senalik, D., Szklarczyk, M., Grzebelus, D., Spooner, D., and Simon, P. (2012). De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. BMC Plant Biol. 12:61. doi: 10.1186/1471-2229-12-61
    • (2012) BMC Plant Biol , vol.12 , pp. 61
    • Iorizzo, M.1    Senalik, D.2    Szklarczyk, M.3    Grzebelus, D.4    Spooner, D.5    Simon, P.6
  • 13
    • 37649007931 scopus 로고    scopus 로고
    • Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
    • Jansen, R. K., Cai, Z., Raubeson, L. A., Daniell, H., Depamphilis, C. W., Leebens-Mack, J., et al. (2007). Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc. Natl. Acad. Sci. U.S.A. 104, 19369-19374. doi: 10.1073/pnas.0709121104
    • (2007) Proc. Natl. Acad. Sci. U.S.A , vol.104 , pp. 19369-19374
    • Jansen, R.K.1    Cai, Z.2    Raubeson, L.A.3    Daniell, H.4    Depamphilis, C.W.5    Leebens-Mack, J.6
  • 15
    • 34249817725 scopus 로고    scopus 로고
    • Molecular adaptation during adaptive radiation in the Hawaiian endemic genus Schiedea
    • Kapralov, M. V., and Filatov, D. A. (2006). Molecular adaptation during adaptive radiation in the Hawaiian endemic genus Schiedea. PLoS ONE 1:e8. doi: 10.1371/journal.pone.0000008
    • (2006) Plos ONE , vol.1
    • Kapralov, M.V.1    Filatov, D.A.2
  • 16
    • 84871455695 scopus 로고    scopus 로고
    • Rubisco evolution in C(4) eudicots: An analysis of Amaranthaceae sensu lato
    • Kapralov, M. V., Smith, J. A., and Filatov, D. A. (2012). Rubisco evolution in C(4) eudicots: an analysis of Amaranthaceae sensu lato. PLoS ONE 7:e52974. doi: 10.1371/journal.pone.0052974
    • (2012) Plos ONE , vol.7
    • Kapralov, M.V.1    Smith, J.A.2    Filatov, D.A.3
  • 17
    • 77955019084 scopus 로고    scopus 로고
    • Parallelization of the MAFFT multiple sequence alignment program
    • Katoh, K., and Toh, H. (2010). Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 26, 1899-1900. doi: 10.1093/bioinformat-ics/btq224
    • (2010) Bioinformatics , vol.26 , pp. 1899-1900
    • Katoh, K.1    Toh, H.2
  • 18
    • 34249814033 scopus 로고    scopus 로고
    • Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.)
    • Kawakami, S., Ebana, K., Nishikawa, T., Sato, Y., Vaughan, D. A., and Kadowaki, K.. Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.). Genome 50, 180-187. doi: 10.1139/g06-139
    • Genome , vol.50 , pp. 180-187
    • Kawakami, S.1    Ebana, K.2    Nishikawa, T.3    Sato, Y.4    Vaughan, D.A.5    Kadowaki, K.6
  • 19
    • 11144284040 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants
    • Kim, K. J., and Lee, H. L. (2004). Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. DNA Res. 11, 247-261. doi: 10.1093/dnares/11.4.247
    • (2004) DNA Res , vol.11 , pp. 247-261
    • Kim, K.J.1    Lee, H.L.2
  • 20
    • 67651056502 scopus 로고    scopus 로고
    • Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations
    • Kolz, M., Johnson, T., Sanna, S., Teumer, A., Vitart, V., Perola, M., et al. (2009). Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations. PLoS Genet. 5:e1000504. doi: 10.1371/journal.pgen.1000504
    • (2009) Plos Genet , vol.5
    • Kolz, M.1    Johnson, T.2    Sanna, S.3    Teumer, A.4    Vitart, V.5    Perola, M.6
  • 21
    • 2442562566 scopus 로고    scopus 로고
    • Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants
    • Lee, C., and Wen, J. (2004). Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Mol. Phylogenet. Evol. 31, 894-903. doi: 10.1016/j.ympev.2003.10.009
    • (2004) Mol. Phylogenet. Evol , vol.31 , pp. 894-903
    • Lee, C.1    Wen, J.2
  • 22
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li, H., and Durbin, R. (2010). Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26, 589-595. doi: 10.1093/bioinfor-matics/btp698
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 23
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. (2009). The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079. doi: 10.1093/bioinformatics/btp352
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6
  • 24
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado, P., and Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451-1452. doi: 10.1093/bioin-formatics/btp187
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 25
    • 77958456904 scopus 로고    scopus 로고
    • Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies
    • Lin, C. P., Huang, J. P., Wu, C. S., Hsu, C. Y., and Chaw, S. M. (2010). Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies. GenomeBiol. Evol. 2, 504-517. doi: 10.1093/gbe/evq036
    • (2010) Genomebiol. Evol , vol.2 , pp. 504-517
    • Lin, C.P.1    Huang, J.P.2    Wu, C.S.3    Hsu, C.Y.4    Chaw, S.M.5
  • 26
    • 84869884324 scopus 로고    scopus 로고
    • MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs
    • Liu, C., Zhang, F., Li, T., Lu, M., Wang, L., Yue, W., et al. (2012). MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs. BMC Genomics 13:661. doi: 10.1186/1471-216413-661
    • (2012) BMC Genomics , vol.13 , pp. 661
    • Liu, C.1    Zhang, F.2    Li, T.3    Lu, M.4    Wang, L.5    Yue, W.6
  • 27
    • 84874534534 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences of Mongolia medicine Artemisia frigida and phylogenetic relationships with other plants
    • Liu, Y., Huo, N., Dong, L., Wang, Y., Zhang, S., Young, H. A., et al. (2013). Complete chloroplast genome sequences of Mongolia medicine Artemisia frigida and phylogenetic relationships with other plants. PLoS ONE 8:e57533. doi: 10.1371/journal.pone.0057533
    • (2013) Plos ONE , vol.8
    • Liu, Y.1    Huo, N.2    Dong, L.3    Wang, Y.4    Zhang, S.5    Young, H.A.6
  • 28
    • 36048989002 scopus 로고    scopus 로고
    • OrganellarGenomeDRAW (OGDRAW): A tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
    • Lohse, M., Drechsel, O., and Bock, R. (2007). OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52, 267-274. doi: 10.1007/s00294-007-0161-y
    • (2007) Curr. Genet , vol.52 , pp. 267-274
    • Lohse, M.1    Drechsel, O.2    Bock, R.3
  • 29
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. NucleicAcidsRes. 25, 955-964. doi: 10.1093/nar/25.5.0955
    • (1997) Nucleicacidsres , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 30
    • 84874932278 scopus 로고    scopus 로고
    • Capturing chloroplast variation for molecular ecology studies: A simple next generation sequencing approach applied to a rainforest tree
    • McPherson, H., van der Merwe, M., Delaney, S. K., Edwards, M. A., Henry, R. J., McIntosh, E., et al. (2013). Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree. BMC Ecol. 13:8. doi: 10.1186/14726785-13-8
    • (2013) BMC Ecol , vol.13 , pp. 8
    • McPherson, H.1    Van Der Merwe, M.2    Delaney, S.K.3    Edwards, M.A.4    Henry, R.J.5    McIntosh, E.6
  • 31
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
    • Moore, M. J., Bell, C. D., Soltis, P. S., and Soltis, D. E. (2007). Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc. Natl. Acad. Sci. U.S.A. 104, 19363-19368. doi: 10.1073/pnas.0708072104
    • (2007) Proc. Natl. Acad. Sci. U.S.A , vol.104 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 32
    • 77949494249 scopus 로고    scopus 로고
    • Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
    • Moore, M. J., Soltis, P. S., Bell, C. D., Burleigh, J. G., and Soltis, D. E. (2010). Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc. Natl. Acad. Sci. U.S.A. 107, 4623-4628. doi: 10.1073/pnas.0907801107
    • (2010) Proc. Natl. Acad. Sci. U.S.A , vol.107 , pp. 4623-4628
    • Moore, M.J.1    Soltis, P.S.2    Bell, C.D.3    Burleigh, J.G.4    Soltis, D.E.5
  • 33
  • 34
    • 0022294484 scopus 로고
    • Comparative organization of chloroplast genomes
    • Palmer, J. D. (1985). Comparative organization of chloroplast genomes. Annu. Rev. Genet. 19, 325-354. doi: 10.1146/annurev.ge.19.120185.001545
    • (1985) Annu. Rev , vol.19 , pp. 325-354
    • Palmer, J.D.1
  • 35
    • 72549096467 scopus 로고    scopus 로고
    • Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    • Parks, M., Cronn, R., and Liston, A. (2009). Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biol. 7:84. doi: 10.1186/1741-7007-7-84
    • (2009) BMC Biol , vol.7 , pp. 84
    • Parks, M.1    Cronn, R.2    Liston, A.3
  • 36
    • 84867329854 scopus 로고    scopus 로고
    • Ginseng as a potential novel addition to the antikeloid weaponry
    • Pazyar, N., Omidian, M., and Jamshydian, N. (2012). Ginseng as a potential novel addition to the antikeloid weaponry. Phytother. Res. 26, 1579-1580. doi: 10.1002/ptr.4598
    • (2012) Phytother. Res , vol.26 , pp. 1579-1580
    • Pazyar, N.1    Omidian, M.2    Jamshydian, N.3
  • 37
    • 84873515697 scopus 로고    scopus 로고
    • Genome-wide analysis reveals selection for important traits in domestic horse breeds
    • Petersen, J. L., Mickelson, J. R., Rendahl, A. K., Valberg, S. J., Andersson, L. S., Axelsson, J., et al. (2013). Genome-wide analysis reveals selection for important traits in domestic horse breeds. PLoS Genet. 9:e1003211. doi: 10.1371/jour-nal.pgen.1003211
    • (2013) Plos Genet , vol.9
    • Petersen, J.L.1    Mickelson, J.R.2    Rendahl, A.K.3    Valberg, S.J.4    Ersson, L.S.5    Axelsson, J.6
  • 38
    • 0032725631 scopus 로고    scopus 로고
    • Plastid division and development
    • Pyke, K. A. (1999). Plastid division and development. Plant Cell 11, 549-556. doi: 10.1105/tpc.11.4.549
    • (1999) Plant Cell , vol.11 , pp. 549-556
    • Pyke, K.A.1
  • 39
    • 84874539448 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza
    • Qian, J., Song, J., Gao, H., Zhu, Y., Xu, J., Pang, X., et al. (2013). The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza. PLoS ONE 8:e57607. doi: 10.1371/journal.pone.0057607
    • (2013) Plos ONE , vol.8
    • Qian, J.1    Song, J.2    Gao, H.3    Zhu, Y.4    Xu, J.5    Pang, X.6
  • 40
    • 0035082732 scopus 로고    scopus 로고
    • The plastid chromosome of spinach (Spinacia oler-acea): Complete nucleotide sequence and gene organization
    • Schmitz-Linneweber, C., Maier, R. M., Alcaraz, J. P., Cottet, A., Herrmann, R. G., and Mache, R. (2001). The plastid chromosome of spinach (Spinacia oler-acea): complete nucleotide sequence and gene organization. PlantMol. Biol. 45, 307-315. doi: 10.1023/A:1006478403810
    • (2001) Plantmol. Biol , vol.45 , pp. 307-315
    • Schmitz-Linneweber, C.1    Maier, R.M.2    Alcaraz, J.P.3    Cottet, A.4    Herrmann, R.G.5    Mache, R.6
  • 41
    • 84875071156 scopus 로고    scopus 로고
    • Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: An exemplary study of ycf15 function and evolution in angiosperms
    • Shi, C., Liu, Y., Huang, H., Xia, E. H., Zhang, H. B., and Gao, L. Z. (2013). Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms. PLoS ONE 8:e59620. doi: 10.1371/journal.pone.0059620
    • (2013) Plos ONE , vol.8
    • Shi, C.1    Liu, Y.2    Huang, H.3    Xia, E.H.4    Zhang, H.B.5    Gao, L.Z.6
  • 42
    • 84968989005 scopus 로고
    • The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
    • Shinozaki, K., Ohme, M., Tanaka, M., Wakasugi, T., Hayashida, N., Matsubayashi, T., et al. (1986). The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J. 5, 2043-2049.
    • (1986) EMBO J , vol.5 , pp. 2043-2049
    • Shinozaki, K.1    Ohme, M.2    Tanaka, M.3    Wakasugi, T.4    Hayashida, N.5    Matsubayashi, T.6
  • 43
    • 81055126188 scopus 로고    scopus 로고
    • Archaic human ancestry in East Asia
    • Skoglund, P., and Jakobsson, M. (2011). Archaic human ancestry in East Asia. Proc. Natl. Acad. Sci. U.S.A. 108, 18301-18306. doi: 10.1073/pnas.1108181108
    • (2011) Proc. Natl. Acad. Sci. U.S.A , vol.108 , pp. 18301-18306
    • Skoglund, P.1    Jakobsson, M.2
  • 44
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739. doi: 10.1093/molbev/msr121
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 45
    • 2442645495 scopus 로고    scopus 로고
    • A comparison of rice chloroplast genomes
    • Tang, J., Xia, H., Cao, M., Zhang, X., Zeng, W., Hu, S., et al. (2004). A comparison of rice chloroplast genomes. Plant Physiol. 135, 412-420. doi: 10.1104/pp.103.031245
    • (2004) Plant Physiol , vol.135 , pp. 412-420
    • Tang, J.1    Xia, H.2    Cao, M.3    Zhang, X.4    Zeng, W.5    Hu, S.6
  • 46
    • 0029996029 scopus 로고    scopus 로고
    • Escape and migration of nucleic acids between chloroplasts, mitochondria, and the nucleus
    • Thorsness, P. E., and Weber, E. R. (1996). Escape and migration of nucleic acids between chloroplasts, mitochondria, and the nucleus. Int. Rev. Cytol. 165, 207-234. doi: 10.1016/S0074-7696(08)62223-8
    • (1996) Int. Rev. Cytol , vol.165 , pp. 207-234
    • Thorsness, P.E.1    Weber, E.R.2
  • 47
    • 84872809336 scopus 로고    scopus 로고
    • Screen for footprints of selection during domestication/Captive Breeding of Atlantic Salmon
    • Vasemagi, A., Nilsson, J., McGinnity, P., Cross, T., O'Reilly, P., Glebe, B., et al. (2012). Screen for footprints of selection during domestication/Captive Breeding of Atlantic Salmon. Comp. Funct. Genomics 2012:628204. doi: 10.1155/2012/628204
    • (2012) Comp. Funct. Genomics , vol.2012
    • Vasemagi, A.1    Nilsson, J.2    McGinnity, P.3    Cross, T.4    O'reilly, P.5    Glebe, B.6
  • 48
    • 43549096694 scopus 로고    scopus 로고
    • Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
    • Wang, R. J., Cheng, C. L., Chang, C. C., Wu, C. L., Su, T. M., and Chaw, S. M. (2008). Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots. BMCEvol. Biol. 8:36. doi: 10.1186/14712148-8-36
    • (2008) Bmcevol. Biol , vol.8 , pp. 36
    • Wang, R.J.1    Cheng, C.L.2    Chang, C.C.3    Wu, C.L.4    Su, T.M.5    Chaw, S.M.6
  • 49
    • 79957927000 scopus 로고    scopus 로고
    • The evolution of the plastid chromosome in land plants: Gene content, gene order, gene function
    • Wicke, S., Schneeweiss, G. M., DePamphilis, C. W., Muller, K. F., and Quandt, D.. The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol. Biol. 76, 273-297. doi: 10.1007/s11103-011-9762-4
    • Plant Mol. Biol , vol.76 , pp. 273-297
    • Wicke, S.1    Schneeweiss, G.M.2    Depamphilis, C.W.3    Muller, K.F.4    Quandt, D.5
  • 50
    • 34548108492 scopus 로고    scopus 로고
    • Chloroplast genome (CpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parv-ifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
    • Wu, C. S., Wang, Y. N., Liu, S. M., and Chaw, S. M. (2007). Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parv-ifolium: insights into cpDNA evolution and phylogeny of extant seed plants. Mol. Biol. Evol. 24, 1366-1379. doi: 10.1093/molbev/msm059
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1366-1379
    • Wu, C.S.1    Wang, Y.N.2    Liu, S.M.3    Chaw, S.M.4
  • 51
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman, S. K., Jansen, R. K., and Boore, J. L. (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20, 3252-3255. doi: 10.1093/bioinformatics/bth352
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 52
    • 84862118499 scopus 로고    scopus 로고
    • Polymorphic chloroplast microsatellite loci in Nelumbo (Nelumbonaceae)
    • Xue, J., Wang, S., and Zhou, S. L. (2012). Polymorphic chloroplast microsatellite loci in Nelumbo (Nelumbonaceae). Am. J. Bot. 99, e240-e244. doi: 10.3732/ajb.1100547
    • (2012) Am. J. Bot , vol.99 , pp. e240-e244
    • Xue, J.1    Wang, S.2    Zhou, S.L.3
  • 53
    • 84863390402 scopus 로고    scopus 로고
    • Chloroplast microsatellite markers in Liriodendron tulipifera (Magnoliaceae) and crossspecies amplification in L chinense
    • Yang, A. H., Zhang, J. J., Yao, X. H., and Huang, H. W. (2011). Chloroplast microsatellite markers in Liriodendron tulipifera (Magnoliaceae) and crossspecies amplification in L. chinense. Am. J. Bot. 98, e123-e126. doi: 10.3732/ajb.1000532
    • (2011) Am. J. Bot , vol.98 , pp. e123-e126
    • Yang, A.H.1    Zhang, J.J.2    Yao, X.H.3    Huang, H.W.4
  • 54
    • 84876165796 scopus 로고    scopus 로고
    • Complete chloroplast genome of the genus Cymbidium: Lights into the species identification, phylogenetic implications and population genetic analyses
    • Yang, J. B., Tang, M., Li, H. T., Zhang, Z. R., and Li, D. Z. (2013). Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses. BMC Evol. Biol. 13:84. doi: 10.1186/1471-2148-13-84
    • (2013) BMC Evol. Biol , vol.13 , pp. 84
    • Yang, J.B.1    Tang, M.2    Li, H.T.3    Zhang, Z.R.4    Li, D.Z.5
  • 55
    • 77958527485 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.)
    • Yang, M., Zhang, X., Liu, G., Yin, Y., Chen, K., Yun, Q., et al. (2010). The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.). PLoS ONE 5:e12762. doi: 10.1371/journal.pone.0012762
    • (2010) Plos ONE , vol.5
    • Yang, M.1    Zhang, X.2    Liu, G.3    Yin, Y.4    Chen, K.5    Yun, Q.6
  • 56
    • 84861006956 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences of important oilseed crop Sesamum indicum L
    • Yi, D. K., and Kim, K. J. (2012). Complete chloroplast genome sequences of important oilseed crop Sesamum indicum L. PLoS ONE 7:e35872. doi: 10.1371/jour-nal.pone.0035872
    • (2012) Plos ONE , vol.7
    • Yi, D.K.1    Kim, K.J.2
  • 57
    • 84863425048 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); comparative evolutionary analyses with other three asterids
    • Yi, D. K., Lee, H. L., Sun, B. Y., Chung, M. Y., and Kim, K. J. (2012). The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); comparative evolutionary analyses with other three asterids. Mol. Cells 33, 497-508. doi: 10.1007/s10059-012-2281-6
    • (2012) Mol. Cells , vol.33 , pp. 497-508
    • Yi, D.K.1    Lee, H.L.2    Sun, B.Y.3    Chung, M.Y.4    Kim, K.J.5
  • 58
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D. R., and Birney, E. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829. doi: 10.1101/gr.074492.107
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 59
    • 84896707642 scopus 로고    scopus 로고
    • Insights from the complete chloroplast genome into the evolution of Sesamum indicum L
    • Zhang, H., Li, C., Miao, H., and Xiong, S. (2013). Insights from the complete chloroplast genome into the evolution of Sesamum indicum L. PLoS ONE 8:e80508. doi: 10.1371/journal.pone.0080508
    • (2013) Plos ONE , vol.8
    • Zhang, H.1    Li, C.2    Miao, H.3    Xiong, S.4
  • 60
    • 84856082699 scopus 로고    scopus 로고
    • The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: Insights into the evolution of plant organellar genomes
    • Zhang, T., Fang, Y., Wang, X., Deng, X., Zhang, X., Hu, S., et al. (2012b). The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes. PLoS ONE 7:e30531. doi: 10.1371/journal.pone.0030531
    • (2012) Plos ONE , vol.7
    • Zhang, T.1    Fang, Y.2    Wang, X.3    Deng, X.4    Zhang, X.5    Hu, S.6
  • 61
    • 84864492192 scopus 로고    scopus 로고
    • The organelle genomes of Hassawi rice (Oryza sativa L.) and its hybrid in saudi arabia: Genome variation, rearrangement, and origins
    • Zhang, T., Hu, S., Zhang, G., Pan, L., Zhang, X., Al-Mssallem, I. S., et al. (2012a). The organelle genomes of Hassawi rice (Oryza sativa L.) and its hybrid in saudi arabia: genome variation, rearrangement, and origins. PLoS ONE 7:e42041. doi: 10.1371/journal.pone.0042041
    • (2012) Plos ONE , vol.7
    • Zhang, T.1    Hu, S.2    Zhang, G.3    Pan, L.4    Zhang, X.5    Al-Mssallem, I.S.6
  • 62
    • 82255160638 scopus 로고    scopus 로고
    • An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform
    • Zhang, T., Zhang, X., Hu, S., and Yu, J. (2011). An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform. PlantMethods 7:38. doi: 10.1186/1746-4811-7-38
    • (2011) Plantmethods , vol.7 , pp. 38
    • Zhang, T.1    Zhang, X.2    Hu, S.3    Yu, J.4
  • 63
    • 34248669040 scopus 로고    scopus 로고
    • KaKs_Calculator: Calculating Ka and Ks through model selection and model averaging
    • Zhang, Z., Li, J., Zhao, X. Q., Wang, J., Wong, G. K., and Yu, J. (2006). KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. Genom. Proteom. Bioinform. 4, 259-263. doi: 10.1016/S1672-0229(07)60007-2
    • (2006) Genom. Proteom. Bioinform , vol.4 , pp. 259-263
    • Zhang, Z.1    Li, J.2    Zhao, X.Q.3    Wang, J.4    Wong, G.K.5    Yu, J.6
  • 64
    • 84867291899 scopus 로고    scopus 로고
    • Roles and mechanisms of ginseng in protecting heart
    • Zheng, S. D., Wu, H. J., and Wu, D. L. (2012). Roles and mechanisms of ginseng in protecting heart. Chin. J. Integr. Med. 18, 548-555. doi: 10.1007/s11655-012-1148-1
    • (2012) Chin. J. Integr. Med , vol.18 , pp. 548-555
    • Zheng, S.D.1    Wu, H.J.2    Wu, D.L.3


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