메뉴 건너뛰기




Volumn 8, Issue 1, 2013, Pages

Extent of Linkage Disequilibrium in the Domestic Cat, Felis silvestris catus, and Its Breeds

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREED; CAT; DOMESTIC ANIMAL; FELIS SILVESTRIS CATUS; GENE LINKAGE DISEQUILIBRIUM; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC DISTANCE; GENETIC RESOURCE; HAPLOTYPE; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84872131641     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0053537     Document Type: Article
Times cited : (55)

References (68)
  • 4
    • 37449021651 scopus 로고    scopus 로고
    • The ascent of cat breeds: Genetic evaluations of breeds and worldwide random-bred populations
    • Lipinski MJ, Froenicke L, Baysac KC, Billings NC, Leutenegger CM, et al. (2008) The ascent of cat breeds: Genetic evaluations of breeds and worldwide random-bred populations. Genomics 91: 12-21.
    • (2008) Genomics , vol.91 , pp. 12-21
    • Lipinski, M.J.1    Froenicke, L.2    Baysac, K.C.3    Billings, N.C.4    Leutenegger, C.M.5
  • 7
    • 0034889025 scopus 로고    scopus 로고
    • Genetic identification of wild and domestic cats (Felis silvestris) and their hybrids using Bayesian clustering methods
    • Randi E, Pierpaoli M, Beaumont M, Ragni B, Sforzi A, (2001) Genetic identification of wild and domestic cats (Felis silvestris) and their hybrids using Bayesian clustering methods. Mol Biol Evol 18: 1679-1693.
    • (2001) Mol Biol Evol , vol.18 , pp. 1679-1693
    • Randi, E.1    Pierpaoli, M.2    Beaumont, M.3    Ragni, B.4    Sforzi, A.5
  • 8
    • 34249786856 scopus 로고    scopus 로고
    • Mutations within the FGF5 gene are associated with hair length in cats
    • Drogemuller C, Rufenacht S, Wichert B, Leeb T, (2007) Mutations within the FGF5 gene are associated with hair length in cats. Anim Genet 38: 218-221.
    • (2007) Anim Genet , vol.38 , pp. 218-221
    • Drogemuller, C.1    Rufenacht, S.2    Wichert, B.3    Leeb, T.4
  • 9
    • 34848821208 scopus 로고    scopus 로고
    • Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats
    • Kehler JS, David VA, Schaffer AA, Bajema K, Eizirik E, et al. (2007) Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats. J Hered 98: 555-566.
    • (2007) J Hered , vol.98 , pp. 555-566
    • Kehler, J.S.1    David, V.A.2    Schaffer, A.A.3    Bajema, K.4    Eizirik, E.5
  • 12
    • 34250499841 scopus 로고
    • Devon rex - A third rexoid coat mutant in the cat
    • Robinson R, (1969) Devon rex- A third rexoid coat mutant in the cat. Genetica 40: 597-599.
    • (1969) Genetica , vol.40 , pp. 597-599
    • Robinson, R.1
  • 14
    • 84868197252 scopus 로고
    • Greenwell Springs, LA: Gogees Cattery
    • Johnson G (1991) The Bengal Cat. Greenwell Springs, LA: Gogees Cattery.
    • (1991) The Bengal Cat
    • Johnson, G.1
  • 15
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: models and data
    • Pritchard JK, Przeworski M, (2001) Linkage disequilibrium in humans: models and data. Am J Hum Genet 69: 1-14.
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 18
    • 54949086378 scopus 로고    scopus 로고
    • Linkage disequilibrium compared between five populations of domestic sheep
    • Meadows JR, Chan EK, Kijas JW, (2008) Linkage disequilibrium compared between five populations of domestic sheep. BMC Genet 9: 61.
    • (2008) BMC Genet , vol.9 , pp. 61
    • Meadows, J.R.1    Chan, E.K.2    Kijas, J.W.3
  • 20
    • 79955587949 scopus 로고    scopus 로고
    • Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds
    • Uimari P, Tapio M, (2011) Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds. J Anim Sci 89: 609-614.
    • (2011) J Anim Sci , vol.89 , pp. 609-614
    • Uimari, P.1    Tapio, M.2
  • 21
    • 67650312010 scopus 로고    scopus 로고
    • Linkage disequilibrium and demographic history of wild and domestic canids
    • Gray MM, Granka JM, Bustamante CD, Sutter NB, Boyko AR, et al. (2009) Linkage disequilibrium and demographic history of wild and domestic canids. Genetics 181: 1493-1505.
    • (2009) Genetics , vol.181 , pp. 1493-1505
    • Gray, M.M.1    Granka, J.M.2    Bustamante, C.D.3    Sutter, N.B.4    Boyko, A.R.5
  • 23
    • 28644447707 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    • Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, et al. (2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803-819.
    • (2005) Nature , vol.438 , pp. 803-819
    • Lindblad-Toh, K.1    Wade, C.M.2    Mikkelsen, T.S.3    Karlsson, E.K.4    Jaffe, D.B.5
  • 24
    • 10944237840 scopus 로고    scopus 로고
    • Extensive and breed-specific linkage disequilibrium in Canis familiaris
    • Sutter NB, Eberle MA, Parker HG, Pullar BJ, Kirkness EF, et al. (2004) Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res 14: 2388-2396.
    • (2004) Genome Res , vol.14 , pp. 2388-2396
    • Sutter, N.B.1    Eberle, M.A.2    Parker, H.G.3    Pullar, B.J.4    Kirkness, E.F.5
  • 25
    • 84857494144 scopus 로고    scopus 로고
    • A high density SNP array for the domestic horse and extant perissodactyla: Utility for association mapping, genetic diversity, and phylogeny studies
    • McCue ME, Bannasch DL, Petersen JL, Gurr J, Bailey E, et al. (2012) A high density SNP array for the domestic horse and extant perissodactyla: Utility for association mapping, genetic diversity, and phylogeny studies. PLoS Genet 8: e1002451.
    • (2012) PLoS Genet , vol.8
    • McCue, M.E.1    Bannasch, D.L.2    Petersen, J.L.3    Gurr, J.4    Bailey, E.5
  • 26
    • 70449379045 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis, and population genetics of the domestic horse
    • Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, et al. (2009) Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326: 865-867.
    • (2009) Science , vol.326 , pp. 865-867
    • Wade, C.M.1    Giulotto, E.2    Sigurdsson, S.3    Zoli, M.4    Gnerre, S.5
  • 27
    • 0003867285 scopus 로고    scopus 로고
    • Baltimore, Maryland USA: The Johns Hopkins University Press
    • Gillespie J (2004) Population Genetics: A Concise Guide. Baltimore, Maryland USA: The Johns Hopkins University Press. 214 p.
    • (2004) Population Genetics: A Concise Guide , pp. 214
    • Gillespie, J.1
  • 28
    • 43749105558 scopus 로고    scopus 로고
    • Linkage disequilibrium-understanding the evolutionary past and mapping the medical future
    • Slatkin M, (2008) Linkage disequilibrium-understanding the evolutionary past and mapping the medical future. Nat Rev Genet 9: 477-485.
    • (2008) Nat Rev Genet , vol.9 , pp. 477-485
    • Slatkin, M.1
  • 30
    • 84876462600 scopus 로고    scopus 로고
    • Variation of cats under domestication: genetic assignment of domestic cats to breeds and worldwide random-bred populations
    • Kurushima JD, Lipinski MJ, Gandolfi B, Froenicke L, Grahn JC, et al. (2012) Variation of cats under domestication: genetic assignment of domestic cats to breeds and worldwide random-bred populations. Anim Genet.
    • (2012) Anim Genet
    • Kurushima, J.D.1    Lipinski, M.J.2    Gandolfi, B.3    Froenicke, L.4    Grahn, J.C.5
  • 33
    • 77955165253 scopus 로고    scopus 로고
    • Light whole genome sequence for SNP discovery across domestic cat breeds
    • Mullikin JC, Hansen NF, Shen L, Ebling H, Donahue WF, et al. (2010) Light whole genome sequence for SNP discovery across domestic cat breeds. BMC Genomics 11: 406.
    • (2010) BMC Genomics , vol.11 , pp. 406
    • Mullikin, J.C.1    Hansen, N.F.2    Shen, L.3    Ebling, H.4    Donahue, W.F.5
  • 34
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander DH, Novembre J, Lange K, (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Res 19: 1655-1664.
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 35
    • 77955566179 scopus 로고    scopus 로고
    • Whole-genome genetic diversity in a sample of Australians with deep Aboriginal ancestry
    • McEvoy BP, Lind JM, Wang ET, Moyzis RK, Visscher PM, et al. (2010) Whole-genome genetic diversity in a sample of Australians with deep Aboriginal ancestry. Am J Hum Genet 87: 297-305.
    • (2010) Am J Hum Genet , vol.87 , pp. 297-305
    • McEvoy, B.P.1    Lind, J.M.2    Wang, E.T.3    Moyzis, R.K.4    Visscher, P.M.5
  • 36
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • Paradis E, Claude J, Strimmer K, (2004) APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics 20: 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 37
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 38
    • 77949527981 scopus 로고    scopus 로고
    • pegas: an R package for population genetics with an integrated-modular approach
    • Paradis E, (2010) pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics 26: 419-420.
    • (2010) Bioinformatics , vol.26 , pp. 419-420
    • Paradis, E.1
  • 39
    • 11144229680 scopus 로고    scopus 로고
    • The Genetics Package
    • Warnes GR, (2003) The Genetics Package. RNews 3: 9-13.
    • (2003) RNews , vol.3 , pp. 9-13
    • Warnes, G.R.1
  • 40
    • 0023430504 scopus 로고
    • Gametic disequilibrium measures: proceed with caution
    • Hedrick PW, (1987) Gametic disequilibrium measures: proceed with caution. Genetics 117: 331-341.
    • (1987) Genetics , vol.117 , pp. 331-341
    • Hedrick, P.W.1
  • 41
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: what history has to tell us
    • Nordborg M, Tavaré S, (2002) Linkage disequilibrium: what history has to tell us. Trends in genetics 18: 83-90.
    • (2002) Trends in Genetics , vol.18 , pp. 83-90
    • Nordborg, M.1    Tavaré, S.2
  • 42
    • 77949517584 scopus 로고    scopus 로고
    • Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers
    • Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD, et al. (2009) Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. Plos One 4: e8451.
    • (2009) Plos One , vol.4
    • Yan, J.1    Shah, T.2    Warburton, M.L.3    Buckler, E.S.4    McMullen, M.D.5
  • 45
    • 0023959349 scopus 로고
    • Variances and covariances of squared linkage disequilibria in finite populations
    • Hill WG, Weir BS, (1988) Variances and covariances of squared linkage disequilibria in finite populations. Theor Popul Biol 33: 54-78.
    • (1988) Theor Popul Biol , vol.33 , pp. 54-78
    • Hill, W.G.1    Weir, B.S.2
  • 46
    • 80052748796 scopus 로고    scopus 로고
    • Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene
    • Marroni F, Pinosio S, Zaina G, Fogolari F, Felice N, et al. (2011) Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene. Tree Genetics & Genomes 7: 1011-1023.
    • (2011) Tree Genetics & Genomes , vol.7 , pp. 1011-1023
    • Marroni, F.1    Pinosio, S.2    Zaina, G.3    Fogolari, F.4    Felice, N.5
  • 48
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ, (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 49
    • 61849163371 scopus 로고    scopus 로고
    • An autosomal genetic linkage map of the domestic cat, Felis silvestris catus
    • Menotti-Raymond M, David VA, Schaffer AA, Tomlin JF, Eizirik E, et al. (2009) An autosomal genetic linkage map of the domestic cat, Felis silvestris catus. Genomics 93: 305-313.
    • (2009) Genomics , vol.93 , pp. 305-313
    • Menotti-Raymond, M.1    David, V.A.2    Schaffer, A.A.3    Tomlin, J.F.4    Eizirik, E.5
  • 51
    • 0346284218 scopus 로고    scopus 로고
    • Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus)
    • Menotti-Raymond M, David V, O'Brien SJ, (2003) Second-Generation Integrated Genetic Linkage/Radiation Hybrid Maps of the Domestic Cat (Felis catus). Journal of Heredity 94: 95-106.
    • (2003) Journal of Heredity , vol.94 , pp. 95-106
    • Menotti-Raymond, M.1    David, V.2    O'Brien, S.J.3
  • 54
    • 24644508814 scopus 로고    scopus 로고
    • An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples
    • Menotti-Raymond MA, David VA, Wachter LL, Butler JM, O'Brien SJ, (2005) An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples. J Forensic Sci 50: 1061-1070.
    • (2005) J Forensic Sci , vol.50 , pp. 1061-1070
    • Menotti-Raymond, M.A.1    David, V.A.2    Wachter, L.L.3    Butler, J.M.4    O'Brien, S.J.5
  • 55
    • 49949086849 scopus 로고    scopus 로고
    • Leader of the pack: gene mapping in dogs and other model organisms
    • Karlsson EK, Lindblad-Toh K, (2008) Leader of the pack: gene mapping in dogs and other model organisms. Nat Rev Genet 9: 713-725.
    • (2008) Nat Rev Genet , vol.9 , pp. 713-725
    • Karlsson, E.K.1    Lindblad-Toh, K.2
  • 56
    • 78449300745 scopus 로고    scopus 로고
    • Genome-wide association analysis of osteochondrosis of the tibiotarsal joint in Norwegian Standardbred trotters
    • Lykkjen S, Dolvik NI, McCue ME, Rendahl AK, Mickelson JR, et al. (2010) Genome-wide association analysis of osteochondrosis of the tibiotarsal joint in Norwegian Standardbred trotters. Anim Genet 41Suppl 2: 111-120.
    • (2010) Anim Genet , vol.41 , pp. 111-120
    • Lykkjen, S.1    Dolvik, N.I.2    McCue, M.E.3    Rendahl, A.K.4    Mickelson, J.R.5
  • 57
    • 77949829150 scopus 로고    scopus 로고
    • Localization of canine brachycephaly using an across breed mapping approach
    • Bannasch D, Young A, Myers J, Truve K, Dickinson P, et al. (2010) Localization of canine brachycephaly using an across breed mapping approach. Plos One 5: e9632.
    • (2010) Plos One , vol.5
    • Bannasch, D.1    Young, A.2    Myers, J.3    Truve, K.4    Dickinson, P.5
  • 58
    • 78449274513 scopus 로고    scopus 로고
    • Linkage disequilibrium and historical effective population size in the Thoroughbred horse
    • Corbin LJ, Blott SC, Swinburne JE, Vaudin M, Bishop SC, et al. (2010) Linkage disequilibrium and historical effective population size in the Thoroughbred horse. Anim Genet 41Suppl 2: 8-15.
    • (2010) Anim Genet , vol.41 , pp. 8-15
    • Corbin, L.J.1    Blott, S.C.2    Swinburne, J.E.3    Vaudin, M.4    Bishop, S.C.5
  • 59
    • 78649943779 scopus 로고    scopus 로고
    • Feline genetics: clinical applications and genetic testing
    • Lyons LA, (2010) Feline genetics: clinical applications and genetic testing. Top Companion Anim Med 25: 203-212.
    • (2010) Top Companion Anim Med , vol.25 , pp. 203-212
    • Lyons, L.A.1
  • 60
    • 44149123085 scopus 로고    scopus 로고
    • The Domestic Cat, Felis catus, as a Model of Hereditary and Infectious Disease
    • In: Conn PM, editor, Humana Press
    • Menotti-Raymond M, O'Brien SJ (2008) The Domestic Cat, Felis catus, as a Model of Hereditary and Infectious Disease. In: Conn PM, editor. Source Book of Models for Biomedical Research: Humana Press. 221-232.
    • (2008) Source Book of Models for Biomedical Research , pp. 221-232
    • Menotti-Raymond, M.1    O'Brien, S.J.2
  • 61
    • 0023020187 scopus 로고
    • Inherited homeotic midfacial malformations in Burmese cats
    • Noden DM, Evans HE (1986) Inherited homeotic midfacial malformations in Burmese cats. J Craniofac Genet Dev Biol Suppl 2: 249-266.
    • (1986) J Craniofac Genet Dev Biol Suppl , vol.2 , pp. 249-266
    • Noden, D.M.1    Evans, H.E.2
  • 67
    • 0027253358 scopus 로고
    • Expressivity of the Manx gene in cats
    • Robinson R, (1993) Expressivity of the Manx gene in cats. J Hered 84: 170-172.
    • (1993) J Hered , vol.84 , pp. 170-172
    • Robinson, R.1
  • 68
    • 17144394138 scopus 로고    scopus 로고
    • Tyrosinase mutations associated with Siamese and Burmese patterns in the domestic cat (Felis catus)
    • Lyons LA, Imes DL, Rah HC, Grahn RA, (2005) Tyrosinase mutations associated with Siamese and Burmese patterns in the domestic cat (Felis catus). Anim Genet 36: 119-126.
    • (2005) Anim Genet , vol.36 , pp. 119-126
    • Lyons, L.A.1    Imes, D.L.2    Rah, H.C.3    Grahn, R.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.