-
1
-
-
33750627310
-
Ectomycorrhizas-out of Africa?
-
Alexander, I. J. 2006. Ectomycorrhizas-out of Africa? New Phytol. 172:589-591.
-
(2006)
New Phytol
, vol.172
, pp. 589-591
-
-
Alexander, I.J.1
-
2
-
-
67649970481
-
Speciation and extinction in the fossil record of North American mammals
-
R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Cambridge Univ. Press, Cambridge, U.K.
-
Alroy, J. 2009. Speciation and extinction in the fossil record of North American mammals. Pp. 301-323 in R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Speciation and patterns of diversity. Cambridge Univ. Press, Cambridge, U.K.
-
(2009)
Speciation and patterns of diversity
, pp. 301-323
-
-
Alroy, J.1
-
4
-
-
84927912076
-
Extinction can be estimated from moderately sized molecular phylogenies
-
Beaulieu J. M., and B. C. O'Meara. 2015. Extinction can be estimated from moderately sized molecular phylogenies. Evolution. 69:1036-1043.
-
(2015)
Evolution
, vol.69
, pp. 1036-1043
-
-
Beaulieu, J.M.1
O'Meara, B.C.2
-
5
-
-
84890279798
-
Why are there so many species in the tropics?
-
Brown, J. H. 2014. Why are there so many species in the tropics? J. Biogeogr. 41:8-22.
-
(2014)
J. Biogeogr.
, vol.41
, pp. 8-22
-
-
Brown, J.H.1
-
6
-
-
34248584606
-
Soil niche effect on species diversity and catabolic activities in an ectomycorrhizal fungal community
-
Buée, M., P. E. Courty, D. Mignot, and J. Garbaye. 2007. Soil niche effect on species diversity and catabolic activities in an ectomycorrhizal fungal community. Soil Biol. Biochem. 39:1947-1955.
-
(2007)
Soil Biol. Biochem.
, vol.39
, pp. 1947-1955
-
-
Buée, M.1
Courty, P.E.2
Mignot, D.3
Garbaye, J.4
-
7
-
-
11944264347
-
Phylogenetic comparative analysis: a modeling approach for adaptive evolution
-
Butler, M. A., and A. A. King. 2004. Phylogenetic comparative analysis: a modeling approach for adaptive evolution. Am. Nat. 164:683-695.
-
(2004)
Am. Nat.
, vol.164
, pp. 683-695
-
-
Butler, M.A.1
King, A.A.2
-
8
-
-
69449091962
-
Speciation and patterns of biodiversity
-
R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Cambridge Univ. Press, Cambridge, U.K.
-
Butlin, R. K., J. R. Bridle, and D. Schluter. 2009. Speciation and patterns of biodiversity. Pp. 1-14 in R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Speciation and patterns of diversity. Cambridge Univ. Press, Cambridge, U.K.
-
(2009)
Speciation and patterns of diversity
, pp. 1-14
-
-
Butlin, R.K.1
Bridle, J.R.2
Schluter, D.3
-
9
-
-
51549114497
-
Population evidence of cryptic species and geographical structure in the cosmopolitan ectomycorrhizal fungus Tricholoma scalpturatum
-
Carriconde, F., M. Gardes, P. Jargeat, J. Heilmann-Clausen, B. Mouhamadou, and H. Gryta. 2008. Population evidence of cryptic species and geographical structure in the cosmopolitan ectomycorrhizal fungus Tricholoma scalpturatum. Microb. Ecol. 56:513-524
-
(2008)
Microb. Ecol.
, vol.56
, pp. 513-524
-
-
Carriconde, F.1
Gardes, M.2
Jargeat, P.3
Heilmann-Clausen, J.4
Mouhamadou, B.5
Gryta, H.6
-
10
-
-
77955144822
-
Habitat use affects morphological diversification in dragon lizards
-
Collar, D. C., J. A. Schulte II, B. C. O'Meara, and J. B. Losos. 2010. Habitat use affects morphological diversification in dragon lizards. J. Evol. Biol. 23:1033-1049.
-
(2010)
J. Evol. Biol.
, vol.23
, pp. 1033-1049
-
-
Collar, D.C.1
Schulte, J.A.2
O'Meara, B.C.3
Losos, J.B.4
-
11
-
-
84884270645
-
Theory, community assembly, diversity and evolution in the microbial world
-
R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Cambridge Univ. Press, Cambridge, U.K.
-
Curtis, T. P., N. C. Wallbridge, and W. T. Sloan. 2009. Theory, community assembly, diversity and evolution in the microbial world. Pp. 59-76 in R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Speciation and patterns of diversity. Cambridge Univ. Press, Cambridge, U.K.
-
(2009)
Speciation and patterns of diversity
, pp. 59-76
-
-
Curtis, T.P.1
Wallbridge, N.C.2
Sloan, W.T.3
-
12
-
-
84878529453
-
Molecular evolution and the latitudinal biodiversity gradient
-
Dowle, E. J., M. Morgan-Richards, and S. A. Trewick. 2013. Molecular evolution and the latitudinal biodiversity gradient. Heredity 110:501-510.
-
(2013)
Heredity
, vol.110
, pp. 501-510
-
-
Dowle, E.J.1
Morgan-Richards, M.2
Trewick, S.A.3
-
13
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and BEAST 1.7
-
Drummond, A. J., M. A. Suchard, D. Xie, and A. Rambaut. 2012. Bayesian phylogenetics with BEAUti and BEAST 1.7. Mol. Biol. Evol. 29:1969-1973.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
14
-
-
84860168906
-
A conceptual and statistical framework for adaptive radiations with a key role for diversity dependence
-
Etienne, R. S., and B. Haegman. 2012. A conceptual and statistical framework for adaptive radiations with a key role for diversity dependence. Am. Nat. 180:75-89.
-
(2012)
Am. Nat.
, vol.180
, pp. 75-89
-
-
Etienne, R.S.1
Haegman, B.2
-
15
-
-
84857283951
-
Prolonging the past counteracts the pull of the present: protracted speciation can explain observed slowdowns in diversification
-
Etienne, R. S., and J. Rosindell. 2012. Prolonging the past counteracts the pull of the present: protracted speciation can explain observed slowdowns in diversification. Syst. Biol. 61:204-213.
-
(2012)
Syst. Biol.
, vol.61
, pp. 204-213
-
-
Etienne, R.S.1
Rosindell, J.2
-
16
-
-
84857574006
-
Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record
-
Etienne, R. S., B. Haegeman, T. Stadler, T. Aze, P. N. Pearson, A. Purvis, and A. B. Phillimore. 2012. Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record. Proc. R. Soc. B 279:1300-1309.
-
(2012)
Proc. R. Soc. B
, vol.279
, pp. 1300-1309
-
-
Etienne, R.S.1
Haegeman, B.2
Stadler, T.3
Aze, T.4
Pearson, P.N.5
Purvis, A.6
Phillimore, A.B.7
-
17
-
-
84905371833
-
Estimating the duration of speciation from phylogenies
-
Etienne, R. S., H. Morlon, and A. Lambert. 2014. Estimating the duration of speciation from phylogenies. Evolution 68:2430-2440.
-
(2014)
Evolution
, vol.68
, pp. 2430-2440
-
-
Etienne, R.S.1
Morlon, H.2
Lambert, A.3
-
18
-
-
78650666284
-
Quantitative traits and diversification
-
Fitzjohn, R. G. 2010. Quantitative traits and diversification. Syst. Biol. 59:619-633.
-
(2010)
Syst. Biol.
, vol.59
, pp. 619-633
-
-
Fitzjohn, R.G.1
-
19
-
-
84871008957
-
Diversitree: comparative phylogenetic analyses of diversification in R
-
Fitzjohn, R. G. 2012. Diversitree: comparative phylogenetic analyses of diversification in R. Methods Ecol. Evol. 3:1084-1092.
-
(2012)
Methods Ecol. Evol.
, vol.3
, pp. 1084-1092
-
-
Fitzjohn, R.G.1
-
20
-
-
0034636581
-
Global patterns of biodiversity
-
Gaston, K. J. 2000. Global patterns of biodiversity. Nature 405:220-227.
-
(2000)
Nature
, vol.405
, pp. 220-227
-
-
Gaston, K.J.1
-
21
-
-
33645108746
-
Beringian origins and cryptic speciation events in the fly agaric (Amanita muscaria)
-
Geml, J., A. Laursen, K. O'Neill, H. C. Nusbaum, and D. L. Taylor. 2006. Beringian origins and cryptic speciation events in the fly agaric (Amanita muscaria). Mol. Ecol. 15:225-239.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 225-239
-
-
Geml, J.1
Laursen, A.2
O'Neill, K.3
Nusbaum, H.C.4
Taylor, D.L.5
-
22
-
-
47949086073
-
Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete
-
Geml, J., R. E. Tulloss, G. A. Laursen, N. A. Sazanova, and D. L. Taylor. 2008. Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete. Mol. Phylogenet. Evol. 48:694-701.
-
(2008)
Mol. Phylogenet. Evol.
, vol.48
, pp. 694-701
-
-
Geml, J.1
Tulloss, R.E.2
Laursen, G.A.3
Sazanova, N.A.4
Taylor, D.L.5
-
23
-
-
0035929127
-
Effects of size and temperature on metabolic rate
-
Gillooly, J. F., J. H. Brown, G. B. West, V. M. Savage, and E. L. Charnov. 2001. Effects of size and temperature on metabolic rate. Science 293:2248-2251.
-
(2001)
Science
, vol.293
, pp. 2248-2251
-
-
Gillooly, J.F.1
Brown, J.H.2
West, G.B.3
Savage, V.M.4
Charnov, E.L.5
-
24
-
-
78149386517
-
Phylogenetic insights on adaptive radiation
-
Glor, R. 2010. Phylogenetic insights on adaptive radiation. Annu. Rev. Ecol. Evol. Syst. 41:251-270.
-
(2010)
Annu. Rev. Ecol. Evol. Syst.
, vol.41
, pp. 251-270
-
-
Glor, R.1
-
25
-
-
77958169089
-
Species selection maintains self-incompatibility
-
Goldberg, E. E., J. R. Kohn, R. Lande, K. A. Robertson, S. A. Smith, and B. Igić. 2010. Species selection maintains self-incompatibility. Science 330:493-495.
-
(2010)
Science
, vol.330
, pp. 493-495
-
-
Goldberg, E.E.1
Kohn, J.R.2
Lande, R.3
Robertson, K.A.4
Smith, S.A.5
Igić, B.6
-
26
-
-
79959436449
-
Phylogenetic inference of reciprocal effects between geographic range evolution and diversification
-
Goldberg, E. E., L. T. Lancaster, and R. H. Ree. 2011. Phylogenetic inference of reciprocal effects between geographic range evolution and diversification. Syst. Biol. 60:451-465.
-
(2011)
Syst. Biol.
, vol.60
, pp. 451-465
-
-
Goldberg, E.E.1
Lancaster, L.T.2
Ree, R.H.3
-
27
-
-
0043023771
-
Tempo and mode of evolutionary radiation in iguanian lizards
-
Harmon, L. J., J. A. Schulte II, A. Larson, and J. B. Losos. 2003. Tempo and mode of evolutionary radiation in iguanian lizards. Science 301:961-964.
-
(2003)
Science
, vol.301
, pp. 961-964
-
-
Harmon, L.J.1
Schulte, J.A.2
Larson, A.3
Losos, J.B.4
-
28
-
-
33750608830
-
New Clavulina species from the Pakaraima Mountains of Guyana
-
Henkel, T. W., R. Meszaros, M. C. Aime, and A. Kennedy. 2005. New Clavulina species from the Pakaraima Mountains of Guyana. Mycol. Progr. 4:343-350.
-
(2005)
Mycol. Progr
, vol.4
, pp. 343-350
-
-
Henkel, T.W.1
Meszaros, R.2
Aime, M.C.3
Kennedy, A.4
-
29
-
-
84877882889
-
Using phylogenetic information and the comparative method to evaluate hypotheses in macroecology
-
Hernández, C. E., E. Rodríguez-Serrano, J. Avaria-Llautureo, O. Inostroza-Michael, B. Morales-Pallero, D. Boric-Bargetto, C. B. Canales-Aguirre, P. A. Marquet, and A. Meade. 2013. Using phylogenetic information and the comparative method to evaluate hypotheses in macroecology. Methods Ecol. Evol. 4:401-415.
-
(2013)
Methods Ecol. Evol.
, vol.4
, pp. 401-415
-
-
Hernández, C.E.1
Rodríguez-Serrano, E.2
Avaria-Llautureo, J.3
Inostroza-Michael, O.4
Morales-Pallero, B.5
Boric-Bargetto, D.6
Canales-Aguirre, C.B.7
Marquet, P.A.8
Meade, A.9
-
30
-
-
1542438057
-
On the generality of the latitudinal diversity gradient
-
Hillebrand, H. 2004. On the generality of the latitudinal diversity gradient. Am. Nat. 163:192-211.
-
(2004)
Am. Nat.
, vol.163
, pp. 192-211
-
-
Hillebrand, H.1
-
31
-
-
0034946147
-
Body size determines the strength of the latitudinal diversity gradient
-
Hillebrand, H., and A. I. Azovsky. 2001. Body size determines the strength of the latitudinal diversity gradient. Ecography 24:251-256.
-
(2001)
Ecography
, vol.24
, pp. 251-256
-
-
Hillebrand, H.1
Azovsky, A.I.2
-
32
-
-
84897033787
-
Do past climate states influence diversity dynamics and the present-day latitudinal diversity gradient?
-
Huang, S., K. Roy, and D. Jablonski. 2014. Do past climate states influence diversity dynamics and the present-day latitudinal diversity gradient? Global Ecol. Biogeogr. 23:530-540.
-
(2014)
Global Ecol. Biogeogr.
, vol.23
, pp. 530-540
-
-
Huang, S.1
Roy, K.2
Jablonski, D.3
-
33
-
-
84877917356
-
SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC
-
Ingram, T., and D. L. Mahler. 2013. SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC. Methods Ecol. Evol. 4:416-425.
-
(2013)
Methods Ecol. Evol.
, vol.4
, pp. 416-425
-
-
Ingram, T.1
Mahler, D.L.2
-
34
-
-
33749605422
-
Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient
-
Jablonski, D., K. Roy, and J. W. Valentine. 2006. Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient. Nature 314:102-106.
-
(2006)
Nature
, vol.314
, pp. 102-106
-
-
Jablonski, D.1
Roy, K.2
Valentine, J.W.3
-
35
-
-
78649536589
-
Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota)
-
Jargeat, P., F. Martos, F. Carriconde, H. Gryta, P. A. Moreau, and M. Gardes. 2010. Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota). Mol. Ecol. 19:5216-5230.
-
(2010)
Mol. Ecol.
, vol.19
, pp. 5216-5230
-
-
Jargeat, P.1
Martos, F.2
Carriconde, F.3
Gryta, H.4
Moreau, P.A.5
Gardes, M.6
-
36
-
-
42149135515
-
Molecular phylogeny and historical biogeography of the genus Tuber, the 'true truffles
-
Jeandroz, S., C. Murat, Y. Wang, P. Bonfante, and F. LeTacon. 2008. Molecular phylogeny and historical biogeography of the genus Tuber, the 'true truffles'. J. Biogeogr. 35:815-829.
-
(2008)
J. Biogeogr.
, vol.35
, pp. 815-829
-
-
Jeandroz, S.1
Murat, C.2
Wang, Y.3
Bonfante, P.4
Le Tacon, F.5
-
37
-
-
84865517751
-
Scaling up: examining the macroecology of ectomycorrhizal fungi
-
Kennedy, P. G., P. B. Matheny, K. M. Ryberg, T. W. Henkel, J. K. Uehling, and M. E. Smith. 2012. Scaling up: examining the macroecology of ectomycorrhizal fungi. Mol. Ecol. 21:4151-4154.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 4151-4154
-
-
Kennedy, P.G.1
Matheny, P.B.2
Ryberg, K.M.3
Henkel, T.W.4
Uehling, J.K.5
Smith, M.E.6
-
38
-
-
36749013876
-
Inverse latitudinal diversity gradients in species diversity
-
D. Storch, P. A. Maquet, and J. H. Brown, eds. Cambridge Univ. Press, Cambridge, U. K.
-
Kindlmann, P., I. Schödelbauerová, and A. G. Dixon. 2007. Inverse latitudinal diversity gradients in species diversity. Pp. 276-257 in D. Storch, P. A. Maquet, and J. H. Brown, eds. Scaling biodiversity. Cambridge Univ. Press, Cambridge, U. K.
-
(2007)
Scaling biodiversity
, pp. 257-276
-
-
Kindlmann, P.1
Schödelbauerová, I.2
Dixon, A.G.3
-
39
-
-
0003804933
-
-
Wallingford, U.K.
-
Kirk, P. M., P. F, Cannon, D. W. Minter, and J. A. Stalpers. 2008. Dictionary of the fungi. CABI, Wallingford, U.K.
-
(2008)
Dictionary of the fungi. CABI
-
-
Kirk, P.M.1
Cannon, P.F.2
Minter, D.W.3
Stalpers, J.A.4
-
40
-
-
84935070123
-
The reconstructed tree in the lineage-based model of protracted speciation
-
Lambert, A., H. Morlon, and R. S. Etienne. 2015. The reconstructed tree in the lineage-based model of protracted speciation. J. Math. Biol. 70:367-397.
-
(2015)
J. Math. Biol.
, vol.70
, pp. 367-397
-
-
Lambert, A.1
Morlon, H.2
Etienne, R.S.3
-
41
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Lemey, P., A. Rambaut, A. J. Drummond, and M. A. Suchard. 2009. Bayesian phylogeography finds its roots. PLoS Comp. Biol. 5:e1000520.
-
(2009)
PLoS Comp. Biol.
, vol.5
, pp. e1000520
-
-
Lemey, P.1
Rambaut, A.2
Drummond, A.J.3
Suchard, M.A.4
-
42
-
-
58249114651
-
A likelihood framework for estimating phylogeographic history on a continuous landscape
-
Lemmon, A., and E. M. Lemmon. 2008. A likelihood framework for estimating phylogeographic history on a continuous landscape. Syst. Biol. 57:544-561.
-
(2008)
Syst. Biol.
, vol.57
, pp. 544-561
-
-
Lemmon, A.1
Lemmon, E.M.2
-
43
-
-
84883303899
-
Modelling plant population size and extinction thresholds from habitat loss and habitat fragmentation: effects of neighbouring competition and dispersal strategy
-
Liao, J., Z. Li, D. E. Hiebeler, M. El-Bana, G. Deckmyn, and I. Nijs. 2013. Modelling plant population size and extinction thresholds from habitat loss and habitat fragmentation: effects of neighbouring competition and dispersal strategy. Ecol. Model. 268:9-17.
-
(2013)
Ecol. Model.
, vol.268
, pp. 9-17
-
-
Liao, J.1
Li, Z.2
Hiebeler, D.E.3
El-Bana, M.4
Deckmyn, G.5
Nijs, I.6
-
44
-
-
84897071940
-
-
What is punctuated equilibrium? What is macroevolution? A response to Pennell /articleTitle
-
Lieberman, B. S., and N. Eldredge. 2014. What is punctuated equilibrium? What is macroevolution? A response to Pennell et al. Trends Ecol. Evol. 29:185-186.
-
(2014)
Trends Ecol. Evol.
, vol.29
, pp. 185-186
-
-
Lieberman, B.S.1
Eldredge, N.2
-
45
-
-
84923404983
-
The unsolved challenge to phylogenetic correlation tests for categorical characters
-
Maddison, W. P., and R. G. FitzJohn. 2015. The unsolved challenge to phylogenetic correlation tests for categorical characters. Syst. Biol. 64:127-136.
-
(2015)
Syst. Biol.
, vol.64
, pp. 127-136
-
-
Maddison, W.P.1
FitzJohn, R.G.2
-
46
-
-
34548657597
-
Estimating a binary character's effect on speciation and extinction
-
Maddison, W. P., P. E. Midford, and S. P. Otto. 2007. Estimating a binary character's effect on speciation and extinction. Syst. Biol. 56:701-710.
-
(2007)
Syst. Biol.
, vol.56
, pp. 701-710
-
-
Maddison, W.P.1
Midford, P.E.2
Otto, S.P.3
-
47
-
-
84880406721
-
Exceptional convergence on the macroevolutionary landscape in island lizard radiations
-
Mahler, D. L., T. Ingram, L. J. Revell, and J. B. Losos. 2013. Exceptional convergence on the macroevolutionary landscape in island lizard radiations. Science 341:292-295.
-
(2013)
Science
, vol.341
, pp. 292-295
-
-
Mahler, D.L.1
Ingram, T.2
Revell, L.J.3
Losos, J.B.4
-
48
-
-
0036160835
-
Phylogeography of the ectomycorrhizal Pisolithus species as inferred from nuclear ribosomal DNA ITS sequences
-
Martin, F., J. Díez, B. Dell, and C. Delaruelle. 2002. Phylogeography of the ectomycorrhizal Pisolithus species as inferred from nuclear ribosomal DNA ITS sequences. New Phytol. 153:345-357.
-
(2002)
New Phytol
, vol.153
, pp. 345-357
-
-
Martin, F.1
Díez, J.2
Dell, B.3
Delaruelle, C.4
-
49
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny, J. B. H., B. J. Bohannan, J. H. Brown, R. K. Colwell, J. A. Fuhrman, J. L. Green, M. C. Horner-Devine, M. Kane, J. Adams Krumins, C. R. Kuske, et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Adams Krumins, J.9
Kuske, C.R.10
-
50
-
-
62149119183
-
Out of the Paleotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae
-
Matheny, P. B., M. C. Aime, N. L. Bougler, B. Buyck, D. E. Desjardin, E. Horak, B. R. Kropp, D. J. Lodge, K. Soytong, J. M. Trappe, et al. 2009. Out of the Paleotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. J. Biogeogr. 36:577-592.
-
(2009)
J. Biogeogr.
, vol.36
, pp. 577-592
-
-
Matheny, P.B.1
Aime, M.C.2
Bougler, N.L.3
Buyck, B.4
Desjardin, D.E.5
Horak, E.6
Kropp, B.R.7
Lodge, D.J.8
Soytong, K.9
Trappe, J.M.10
-
51
-
-
80053213575
-
Detecting shifts in diversity limits from molecular phylogenies: what can we know?
-
McInnes, L., C. David, L. Orme, and A. Purvis. 2011. Detecting shifts in diversity limits from molecular phylogenies: what can we know? Proc. R. Soc. B 278:3294-3302.
-
(2011)
Proc. R. Soc. B
, vol.278
, pp. 3294-3302
-
-
McInnes, L.1
David, C.2
Orme, L.3
Purvis, A.4
-
52
-
-
56849086553
-
The ecological dynamics of clade diversification and community assembly
-
McPeek, M. A. 2008. The ecological dynamics of clade diversification and community assembly. Am. Nat. 172:270-284.
-
(2008)
Am. Nat.
, vol.172
, pp. 270-284
-
-
McPeek, M.A.1
-
53
-
-
33947288482
-
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
-
Mittelbach, G. G., D. W. Schemske, H. V. Cornell, A. P. Allen, J. M. Brown, M. B. Bush, S. P. Harrison, A. H. Hurlbert, N. Knowlton, H. A. Lessios, et al. 2007. Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol. Lett. 10:315-331.
-
(2007)
Ecol. Lett.
, vol.10
, pp. 315-331
-
-
Mittelbach, G.G.1
Schemske, D.W.2
Cornell, H.V.3
Allen, A.P.4
Brown, J.M.5
Bush, M.B.6
Harrison, S.P.7
Hurlbert, A.H.8
Knowlton, N.9
Lessios, H.A.10
-
54
-
-
84897062906
-
Why does diversification slow down?
-
Moen, D., and H. Morlon. 2014. Why does diversification slow down? Trends. Ecol. Evol. 29:190-197.
-
(2014)
Trends. Ecol. Evol.
, vol.29
, pp. 190-197
-
-
Moen, D.1
Morlon, H.2
-
55
-
-
77957907040
-
Inferring the dynamics of diversification: a coalescent approach
-
Morlon, H., M. D. Potts, and J. B. Plotkin. 2010. Inferring the dynamics of diversification: a coalescent approach. PLoS Biol. 8:e1000493.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000493
-
-
Morlon, H.1
Potts, M.D.2
Plotkin, J.B.3
-
56
-
-
33845380445
-
Birth-death models in macroevolution
-
Nee, S. 2006. Birth-death models in macroevolution. Annu. Rev. Ecol. Evol. Syst. 37:1-17.
-
(2006)
Annu. Rev. Ecol. Evol. Syst.
, vol.37
, pp. 1-17
-
-
Nee, S.1
-
58
-
-
84872600487
-
Evolutionary inferences from phylogenies: a review of methods
-
O'Meara, B. C. 2012. Evolutionary inferences from phylogenies: a review of methods. Annu. Rev. Ecol. Evol. Syst. 43:267-285.
-
(2012)
Annu. Rev. Ecol. Evol. Syst.
, vol.43
, pp. 267-285
-
-
O'Meara, B.C.1
-
59
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis, E., J. Claude, and K. Strimmer. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
60
-
-
34248212114
-
A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi
-
Peay, K. G., T. D. Bruns, P. G. Kennedy, S. E. Bergemann, and M. Garbelotto. 2007. A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi. Ecol. Lett. 10:470-480.
-
(2007)
Ecol. Lett.
, vol.10
, pp. 470-480
-
-
Peay, K.G.1
Bruns, T.D.2
Kennedy, P.G.3
Bergemann, S.E.4
Garbelotto, M.5
-
61
-
-
41749120055
-
Density-dependent cladogenesis in birds
-
Phillimore, A. B., and T. D. Price. 2008. Density-dependent cladogenesis in birds. PLoS Biol. 6:e71.
-
(2008)
PLoS Biol.
, vol.6
, pp. e71
-
-
Phillimore, A.B.1
Price, T.D.2
-
62
-
-
0002891016
-
Latitudinal gradients in species diversity: a review of concepts
-
Pianka, E. R. 1966. Latitudinal gradients in species diversity: a review of concepts. Am. Nat. 100:33-46.
-
(1966)
Am. Nat.
, vol.100
, pp. 33-46
-
-
Pianka, E.R.1
-
63
-
-
84883823099
-
Large-scale phylogenetic analyses reveal the causes of high tropical amphibian diversity
-
Pyron, R. A., and J. J. Wiens. 2013. Large-scale phylogenetic analyses reveal the causes of high tropical amphibian diversity. Proc. R. Soc. B 280:20131622.
-
(2013)
Proc. R. Soc. B
, vol.280
, pp. 20131622
-
-
Pyron, R.A.1
Wiens, J.J.2
-
64
-
-
77954661368
-
Diversity dynamics: molecular phylogenies need the fossil record
-
Quental, T. B., and C. R. Marshall. 2010. Diversity dynamics: molecular phylogenies need the fossil record. Trends Ecol. Evol. 25:434-441.
-
(2010)
Trends Ecol. Evol.
, vol.25
, pp. 434-441
-
-
Quental, T.B.1
Marshall, C.R.2
-
65
-
-
67649964248
-
Ecological limits on clade diversification in higher taxa
-
Rabosky, D. L. 2009. Ecological limits on clade diversification in higher taxa. Am. Nat. 173:662-674.
-
(2009)
Am. Nat.
, vol.173
, pp. 662-674
-
-
Rabosky, D.L.1
-
66
-
-
77953910538
-
Extinction rates should not be estimated from molecular phylogenies
-
Rabosky, D. L. 2010. Extinction rates should not be estimated from molecular phylogenies. Evolution 64:1816-1824.
-
(2010)
Evolution
, vol.64
, pp. 1816-1824
-
-
Rabosky, D.L.1
-
67
-
-
84888609856
-
Diversity-dependence, ecological speciation, and the role of competition in macroevolution
-
Rabosky, D. L. 2013. Diversity-dependence, ecological speciation, and the role of competition in macroevolution. Annu. Rev. Ecol. Evol. Syst. 44:481-502.
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 481-502
-
-
Rabosky, D.L.1
-
68
-
-
84896270571
-
Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees
-
Rabosky, D. L. 2014. Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. PLoS One 9:e89543.
-
(2014)
PLoS One
, vol.9
, pp. e89543
-
-
Rabosky, D.L.1
-
69
-
-
84964267412
-
Model inadequacy and mistaken inferences of trait-dependent speciation
-
Rabosky, D. L., and E. E. Goldberg. 2015. Model inadequacy and mistaken inferences of trait-dependent speciation. Syst. Biol. 64:340-355.
-
(2015)
Syst. Biol.
, vol.64
, pp. 340-355
-
-
Rabosky, D.L.1
Goldberg, E.E.2
-
70
-
-
47749105699
-
Explosive evolutionary radiations: decreasing speciation or increasing extinction through time?
-
Rabosky, D. L., and I. J. Lovette. 2008. Explosive evolutionary radiations: decreasing speciation or increasing extinction through time? Evolution 62:1866-1875.
-
(2008)
Evolution
, vol.62
, pp. 1866-1875
-
-
Rabosky, D.L.1
Lovette, I.J.2
-
71
-
-
84865802385
-
Clade age and species richness are decoupled across the eukaryotic tree of life
-
Rabosky, D. L., G. L. Slater, and M. E. Alfaro. 2012. Clade age and species richness are decoupled across the eukaryotic tree of life. PLoS Biol. 10:e1001381.
-
(2012)
PLoS Biol
, vol.10
, pp. e1001381
-
-
Rabosky, D.L.1
Slater, G.L.2
Alfaro, M.E.3
-
72
-
-
0027043618
-
Latitudinal gradients in species diversity: the search for the primary cause
-
Rohde, K. 1992. Latitudinal gradients in species diversity: the search for the primary cause. Oikos 65:514-527.
-
(1992)
Oikos
, vol.65
, pp. 514-527
-
-
Rohde, K.1
-
73
-
-
84893741236
-
Faster speciation and reduced extinction in the tropics contribute to the mammalian latitudinal diversity gradient
-
Rolland, J., F. L. Condamine, F. Jiguet, and H. Morlon. 2014. Faster speciation and reduced extinction in the tropics contribute to the mammalian latitudinal diversity gradient. PLoS Biol. 12:e1001775.
-
(2014)
PLoS Biol
, vol.12
, pp. e1001775
-
-
Rolland, J.1
Condamine, F.L.2
Jiguet, F.3
Morlon, H.4
-
74
-
-
84859417998
-
Asynchronous origins of ectomycorrhizal clades of Agaricales
-
Ryberg, M., and P. B. Matheny. 2012. Asynchronous origins of ectomycorrhizal clades of Agaricales. Proc. R. Soc. B 279:2003-2011.
-
(2012)
Proc. R. Soc. B
, vol.279
, pp. 2003-2011
-
-
Ryberg, M.1
Matheny, P.B.2
-
75
-
-
85027932083
-
Palaeotropical origins, boreotropical distribution, and increasing rates of diversification in a clade of edible ectomycorrhizal fungi (Amanita sect. Caesareae)
-
Sánchez-Ramírez, S., R. E. Tulloss, M. Amalfi, and J.-M. Moncalvo. 2015. Palaeotropical origins, boreotropical distribution, and increasing rates of diversification in a clade of edible ectomycorrhizal fungi (Amanita sect. Caesareae). J. Biogeogr. 42:351-363.
-
(2015)
J. Biogeogr.
, vol.42
, pp. 351-363
-
-
Sánchez-Ramírez, S.1
Tulloss, R.E.2
Amalfi, M.3
Moncalvo, J.-M.4
-
76
-
-
84855658200
-
Repeated modification of early limb morphogenesis programmes underlies the convergence of relative limb length in Anolis lizards
-
Sanger, T. J., L. J. Revell, J. J. Gibson-Brown, and J. B. Losos. 2012. Repeated modification of early limb morphogenesis programmes underlies the convergence of relative limb length in Anolis lizards. Proc. R. Soc. B 279:739-748.
-
(2012)
Proc. R. Soc. B
, vol.279
, pp. 739-748
-
-
Sanger, T.J.1
Revell, L.J.2
Gibson-Brown, J.J.3
Losos, J.B.4
-
77
-
-
67651132002
-
Biotic interactions and speciation in the tropics
-
R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Cambridge Univ. Press, Cambridge, U.K.
-
Schemske. 2009. Biotic interactions and speciation in the tropics. Pp. 219-239 in R. K. Butlin, J. R. Bridle, and D. Schluter, eds. Speciation and patterns of diversity. Cambridge Univ. Press, Cambridge, U.K.
-
(2009)
Speciation and patterns of diversity
, pp. 219-239
-
-
Schemske1
-
80
-
-
84890876675
-
Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae)
-
Silvestro, D., G. Zizka, and K. Schulte. 2014. Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution 68:163-175.
-
(2014)
Evolution
, vol.68
, pp. 163-175
-
-
Silvestro, D.1
Zizka, G.2
Schulte, K.3
-
81
-
-
84931424514
-
Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record
-
Silvestro, D., B. Cascales-Miñana, C. Bacon, and A. Antonelli. 2015. Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record. New Phytol 207:425-436.
-
(2015)
New Phytol
, vol.207
, pp. 425-436
-
-
Silvestro, D.1
Cascales-Miñana, B.2
Bacon, C.3
Antonelli, A.4
-
83
-
-
80053648274
-
Inferring speciation and extinction processes from extant species data
-
Stadler, T. 2011a. Inferring speciation and extinction processes from extant species data. Proc. Natl. Acad. Sci. USA 108:16145-16146.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 16145-16146
-
-
Stadler, T.1
-
84
-
-
79955018524
-
Mammalian phylogeny reveals recent diversification rate shifts
-
Stadler, T. 2011b. Mammalian phylogeny reveals recent diversification rate shifts. Proc. Natl. Acad. Sci. USA 108:6187-6192.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 6187-6192
-
-
Stadler, T.1
-
85
-
-
84879214064
-
Recovering speciation and extinction dynamics based on phylogenies
-
Stadler, T. 2013a. Recovering speciation and extinction dynamics based on phylogenies. J. Evol. Biol. 26:1203-1219.
-
(2013)
J. Evol. Biol.
, vol.26
, pp. 1203-1219
-
-
Stadler, T.1
-
86
-
-
84873587932
-
How can we improve accuracy of macroevolutionary rate estimates?
-
Stadler, T. 2013b. How can we improve accuracy of macroevolutionary rate estimates? Syst. Biol. 62:321-329.
-
(2013)
Syst. Biol.
, vol.62
, pp. 321-329
-
-
Stadler, T.1
-
87
-
-
84899657886
-
Endemism and functional convergence across the North American soil mycobiome
-
Talbot, J. M., T. D. Bruns, J. W. Taylor, D. P. Smith, S. Branco, S. I. Glassman, S. Erlandson, R. Vilgalys, H.-L. Liao, M. E. Smith, et al. 2014. Endemism and functional convergence across the North American soil mycobiome. Proc. Natl. Acad. Sci. USA 111:6341-6346.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 6341-6346
-
-
Talbot, J.M.1
Bruns, T.D.2
Taylor, J.W.3
Smith, D.P.4
Branco, S.5
Glassman, S.I.6
Erlandson, S.7
Vilgalys, R.8
Liao, H.-L.9
Smith, M.E.10
-
88
-
-
27444432033
-
The ectomycorrhizal symbiosis: life in the real world
-
Taylor, A. F. S., and I. Alexander. 2005. The ectomycorrhizal symbiosis: life in the real world. Mycologist 19:102-112.
-
(2005)
Mycologist
, vol.19
, pp. 102-112
-
-
Taylor, A.F.S.1
Alexander, I.2
-
89
-
-
84893218742
-
A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning
-
Taylor, D. L., T. N. Hollingsworth, J. W. McFarland, N. J. Lennon, C. Nusbaum, and R. W. Ruess. 2014. A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning. Ecol. Monogr. 84:3-20.
-
(2014)
Ecol. Monogr.
, vol.84
, pp. 3-20
-
-
Taylor, D.L.1
Hollingsworth, T.N.2
McFarland, J.W.3
Lennon, N.J.4
Nusbaum, C.5
Ruess, R.W.6
-
90
-
-
84888295012
-
Lineages of ectomycorrhizal fungi revisited: foraging strategies and novel lineages revealed by sequences from belowground
-
Tedersoo, L., and M. E. Smith. 2013. Lineages of ectomycorrhizal fungi revisited: foraging strategies and novel lineages revealed by sequences from belowground. Fungal Biol. Rev. 27:83-99.
-
(2013)
Fungal Biol. Rev.
, vol.27
, pp. 83-99
-
-
Tedersoo, L.1
Smith, M.E.2
-
91
-
-
72849127383
-
General latitudinal gradient of biodiversity is reversed in ectomycorrhizal fungi
-
Tedersoo, L., and K. Nara. 2010. General latitudinal gradient of biodiversity is reversed in ectomycorrhizal fungi. New Phytol. 185:351-354.
-
(2010)
New Phytol
, vol.185
, pp. 351-354
-
-
Tedersoo, L.1
Nara, K.2
-
92
-
-
77950065721
-
Low diversity and high host preference of ectomycorrhizal fungi in Western Amazonia, a neotropical biodiversity hotspot
-
Tedersoo, L., A. Sadam, M. Zambrano, R. Valencia, and M. Bahram. 2010. Low diversity and high host preference of ectomycorrhizal fungi in Western Amazonia, a neotropical biodiversity hotspot. ISME J. 4:465-471.
-
(2010)
ISME J
, vol.4
, pp. 465-471
-
-
Tedersoo, L.1
Sadam, A.2
Zambrano, M.3
Valencia, R.4
Bahram, M.5
-
93
-
-
84865454851
-
Towards global patterns in the diversity and community structure of ectomycorrhizal fungi
-
Tedersoo, L., M. Bahram, M. Toots, A. G. Diédhiou, T. W. Henkel, R. Kjøller, M. H. Morris, K. Nara, E. Nouhra, K. G. Peay, et al. 2012. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Mol. Ecol. 21:4160-4170.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 4160-4170
-
-
Tedersoo, L.1
Bahram, M.2
Toots, M.3
Diédhiou, A.G.4
Henkel, T.W.5
Kjøller, R.6
Morris, M.H.7
Nara, K.8
Nouhra, E.9
Peay, K.G.10
-
94
-
-
84914142313
-
Fungal biogeography. Global diversity and geography of soil fungi
-
Tedersoo, L., M. Bahram, S. Põlme, U. Kõljalg, N. S. Yorou, R. Wijesundera, L. Villarreal Ruiz, A. M. Vasco-Palacios, P. Q. Thu, A. Suija, et al. 2014. Fungal biogeography. Global diversity and geography of soil fungi. Science 346:1256688.
-
(2014)
Science
, vol.346
, pp. 1256688
-
-
Tedersoo, L.1
Bahram, M.2
Põlme, S.3
Kõljalg, U.4
Yorou, N.S.5
Wijesundera, R.6
Villarreal Ruiz, L.7
Vasco-Palacios, A.M.8
Thu, P.Q.9
Suija, A.10
-
95
-
-
84888292879
-
Seasonal dynamics of fungal communities in a temperate oak forest soil
-
Voříšková, J., V. Brabcová, T. Cajthaml, and P. Baldrian. 2014. Seasonal dynamics of fungal communities in a temperate oak forest soil. New Phytol. 201:269-278.
-
(2014)
New Phytol.
, vol.201
, pp. 269-278
-
-
Voříšková, J.1
Brabcová, V.2
Cajthaml, T.3
Baldrian, P.4
-
96
-
-
33947248885
-
The latitudinal gradient in recent speciation and extinction rates of birds and mammals
-
Weir, J. T., and D. Schluter. 2007. The latitudinal gradient in recent speciation and extinction rates of birds and mammals. Science 315:1574-1576.
-
(2007)
Science
, vol.315
, pp. 1574-1576
-
-
Weir, J.T.1
Schluter, D.2
-
97
-
-
79959577298
-
The causes of species richness patterns across space, time, and clades and the role of "ecological limits
-
Wiens, J. J. 2011. The causes of species richness patterns across space, time, and clades and the role of "ecological limits". Quart. Rev. Biol. 86:75-96.
-
(2011)
Quart. Rev. Biol.
, vol.86
, pp. 75-96
-
-
Wiens, J.J.1
-
98
-
-
8144220848
-
Historical biogeography, ecology and species richness
-
Wiens, J. J., and M. J. Donoghue. 2004. Historical biogeography, ecology and species richness. Trends Ecol. Evol. 19:639-644.
-
(2004)
Trends Ecol. Evol.
, vol.19
, pp. 639-644
-
-
Wiens, J.J.1
Donoghue, M.J.2
-
99
-
-
84860484187
-
Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)
-
Wilson, A. W., M. Binder, and D. S. Hibbett. 2012. Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota). New Phytol. 194:1079-1095.
-
(2012)
New Phytol
, vol.194
, pp. 1079-1095
-
-
Wilson, A.W.1
Binder, M.2
Hibbett, D.S.3
|