-
1
-
-
0034598746
-
Distinct types of diffuse large b-cell lymphomas by gene expression profiling
-
Alizadeh A.A., Eisen M.B., Davis R., Ma C., Lossos I., Rosenwald A., et al. Distinct types of diffuse large b-cell lymphomas by gene expression profiling. Nature 2000, 403:503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.3
Ma, C.4
Lossos, I.5
Rosenwald, A.6
-
2
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
Chu A., DeRisi J., Eisen M., Mulholland J., Botstein D., Brown P.O., et al. The transcriptional program of sporulation in budding yeast. Science 1998, 282:699-705.
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, A.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
-
6
-
-
0345580221
-
Large-scale clustering of cDNA fingerprinting data
-
Herwig R., Poustka A., Meuller C., Lehrach H., O'Brien J. Large-scale clustering of cDNA fingerprinting data. Genome Res. 1999, 9(11):1093-1105.
-
(1999)
Genome Res.
, vol.9
, Issue.11
, pp. 1093-1105
-
-
Herwig, R.1
Poustka, A.2
Meuller, C.3
Lehrach, H.4
O'Brien, J.5
-
7
-
-
17944394324
-
Fuzzy c-means method for clustering microarray data
-
Dembele D., Kastner P. Fuzzy c-means method for clustering microarray data. Bioinformatics 2003, 19(8):973-980.
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 973-980
-
-
Dembele, D.1
Kastner, P.2
-
8
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
-
Tamayo P., Slonim D., Mesirov J., Zhu Q., Kitareewan S., Dmitrovsky E., et al. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc. Nat. Acad. Sci. U.S.A. 1999, 96:2907-2912.
-
(1999)
Proc. Nat. Acad. Sci. U.S.A.
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
-
9
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon U., Barkai N., Notterman D.A., et al. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Nat. Acad. Sci. U.S.A. 1999, 96:6745-6750.
-
(1999)
Proc. Nat. Acad. Sci. U.S.A.
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
-
10
-
-
0035014159
-
Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters
-
Lukashin A.V., Fuchs R. Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters. Bioinformatics 2001, 17(5):405-414.
-
(2001)
Bioinformatics
, vol.17
, Issue.5
, pp. 405-414
-
-
Lukashin, A.V.1
Fuchs, R.2
-
11
-
-
84896730920
-
TriGen: a genetic algorithm to mine triclusters in temporal gene expression data
-
Gutierrez-Aviles D., Rubio-Escudero C., Martinez-Alvarez F., Riquelme J.C. TriGen: a genetic algorithm to mine triclusters in temporal gene expression data. Neurocomputing 2014, 132:42-53.
-
(2014)
Neurocomputing
, vol.132
, pp. 42-53
-
-
Gutierrez-Aviles, D.1
Rubio-Escudero, C.2
Martinez-Alvarez, F.3
Riquelme, J.C.4
-
12
-
-
84902475518
-
Robust gene signatures from microarray data using genetic algorithms enriched with biological pathway keywords
-
Luque-Baena R.M., Urda D., Gonzalo Claros M., Franco L., Jerez J.M. Robust gene signatures from microarray data using genetic algorithms enriched with biological pathway keywords. J. Biomed. Inf. 2014, 49:32-44.
-
(2014)
J. Biomed. Inf.
, vol.49
, pp. 32-44
-
-
Luque-Baena, R.M.1
Urda, D.2
Gonzalo Claros, M.3
Franco, L.4
Jerez, J.M.5
-
13
-
-
84873206321
-
An evolutionary computational model applied to cluster analysis of DNA microarray data
-
Castellanos-Garzon J.A., Diaz F. An evolutionary computational model applied to cluster analysis of DNA microarray data. Expert Syst. Appl. 2013, 40:2575-2591.
-
(2013)
Expert Syst. Appl.
, vol.40
, pp. 2575-2591
-
-
Castellanos-Garzon, J.A.1
Diaz, F.2
-
14
-
-
73449097843
-
Simulated annealing based automatic fuzzy clustering combined with ANN classification for analyzing microarray data
-
Maulik U., Mukhopadhyay A. Simulated annealing based automatic fuzzy clustering combined with ANN classification for analyzing microarray data. Comput. Oper. Res. 2010, 37:1369-1380.
-
(2010)
Comput. Oper. Res.
, vol.37
, pp. 1369-1380
-
-
Maulik, U.1
Mukhopadhyay, A.2
-
15
-
-
79151474328
-
Gene selection and sample classification on microarray data based on adaptive genetic algorithm/k-nearest neighbor method
-
Lee C.P., Lin W.S., Chen Y.M., Kuo B.J. Gene selection and sample classification on microarray data based on adaptive genetic algorithm/k-nearest neighbor method. Expert Syst. Appl. 2011, 38:4661-4667.
-
(2011)
Expert Syst. Appl.
, vol.38
, pp. 4661-4667
-
-
Lee, C.P.1
Lin, W.S.2
Chen, Y.M.3
Kuo, B.J.4
-
16
-
-
70350572773
-
Interval based fuzzy systems for identification of important genes from microarray gene expression data: application to carcinogenic development
-
De R.K., Ghosh A. Interval based fuzzy systems for identification of important genes from microarray gene expression data: application to carcinogenic development. J. Biomed. Inf. 2009, 42:1022-1028.
-
(2009)
J. Biomed. Inf.
, vol.42
, pp. 1022-1028
-
-
De, R.K.1
Ghosh, A.2
-
17
-
-
84880578362
-
OLYMPUS: an automated hybrid clustering method in time series gene expression. Case study: host response after Influenza A (H1N1) infection
-
Dimitrakopoulou K., Vrahatis A.G., Wilk E., Tsakalidis A.K., Bezerianos A. OLYMPUS: an automated hybrid clustering method in time series gene expression. Case study: host response after Influenza A (H1N1) infection. Comput. Methods Programs Biomed. 2013, 111:650-661.
-
(2013)
Comput. Methods Programs Biomed.
, vol.111
, pp. 650-661
-
-
Dimitrakopoulou, K.1
Vrahatis, A.G.2
Wilk, E.3
Tsakalidis, A.K.4
Bezerianos, A.5
-
18
-
-
84887825930
-
A hybrid fuzzy-ontology based intelligent system to determine level of severity and treatment recommendation for benign prostatic hyperplasia
-
Doostparast Torshizi A., Fazel Zarandi M.H., Doostparast G. A hybrid fuzzy-ontology based intelligent system to determine level of severity and treatment recommendation for benign prostatic hyperplasia. Comput. Methods Programs Biomed. 2014, 113:301-313.
-
(2014)
Comput. Methods Programs Biomed.
, vol.113
, pp. 301-313
-
-
Doostparast Torshizi, A.1
Fazel Zarandi, M.H.2
Doostparast, G.3
-
19
-
-
84896859764
-
Segmentation of PET images for computer-aided functional quantification of tuberculosis in small animal models
-
Foster B., Bagci U., Xu Z., Dey B., Luna B., Bishai W., Jain S., Mollura D.J. Segmentation of PET images for computer-aided functional quantification of tuberculosis in small animal models. IEEE Trans. Biomed. Eng. 2014, 61(3):711-724.
-
(2014)
IEEE Trans. Biomed. Eng.
, vol.61
, Issue.3
, pp. 711-724
-
-
Foster, B.1
Bagci, U.2
Xu, Z.3
Dey, B.4
Luna, B.5
Bishai, W.6
Jain, S.7
Mollura, D.J.8
-
20
-
-
84892807894
-
Robust information gain based fuzzy c-means clustering and classification of carotid artery ultrasound images
-
Hassan M., Chaudhry A., Khan A., Iftikhar M.A. Robust information gain based fuzzy c-means clustering and classification of carotid artery ultrasound images. Comput. Methods Programs Biomed. 2014, 113:593-609.
-
(2014)
Comput. Methods Programs Biomed.
, vol.113
, pp. 593-609
-
-
Hassan, M.1
Chaudhry, A.2
Khan, A.3
Iftikhar, M.A.4
-
21
-
-
84883792037
-
Automatic segmentation of corpus collasum using Gaussian mixture modeling and Fuzzy C means methods
-
Icer S. Automatic segmentation of corpus collasum using Gaussian mixture modeling and Fuzzy C means methods. Comput. Methods Programs Biomed. 2013, 112:38-46.
-
(2013)
Comput. Methods Programs Biomed.
, vol.112
, pp. 38-46
-
-
Icer, S.1
-
22
-
-
84875416158
-
A new indirect approach to the type-2 fuzzy systems modeling and design
-
Fazel Zarandi M.H., Doostparast Torshizi A., Turksen I.B., Rezaee B. A new indirect approach to the type-2 fuzzy systems modeling and design. Inf. Sci. 2013, 232:346-365.
-
(2013)
Inf. Sci.
, vol.232
, pp. 346-365
-
-
Fazel Zarandi, M.H.1
Doostparast Torshizi, A.2
Turksen, I.B.3
Rezaee, B.4
-
23
-
-
81155139721
-
Interval type-2 fuzzy expert system for prediction of carbon monoxide concentration in mega-cities
-
Fazel Zarandi M.H., Faraji M.R., Karbasian M. Interval type-2 fuzzy expert system for prediction of carbon monoxide concentration in mega-cities. Appl. Soft Comput. 2012, 12:291-301.
-
(2012)
Appl. Soft Comput.
, vol.12
, pp. 291-301
-
-
Fazel Zarandi, M.H.1
Faraji, M.R.2
Karbasian, M.3
-
24
-
-
79952314626
-
Type-2 fuzzy neural networks with fuzzy clustering and differential evolution optimization
-
Aliev R.A., Pedrycz W., Guirimov B.G., Aliev R.R., Ilhan U., Babagil M., Mammadli S. Type-2 fuzzy neural networks with fuzzy clustering and differential evolution optimization. Inf. Sci. 2011, 181:1591-1608.
-
(2011)
Inf. Sci.
, vol.181
, pp. 1591-1608
-
-
Aliev, R.A.1
Pedrycz, W.2
Guirimov, B.G.3
Aliev, R.R.4
Ilhan, U.5
Babagil, M.6
Mammadli, S.7
-
25
-
-
84861574837
-
Optimization of type-2 fuzzy systems based on bio-inspired methods: a concise review
-
Castillo O., Melin P. Optimization of type-2 fuzzy systems based on bio-inspired methods: a concise review. Inf. Sci. 2012, 205:1-19.
-
(2012)
Inf. Sci.
, vol.205
, pp. 1-19
-
-
Castillo, O.1
Melin, P.2
-
26
-
-
33947430572
-
Uncertain fuzzy clustering: interval type-2 fuzzy approach to c-means
-
Hwang C., Rhee F. Uncertain fuzzy clustering: interval type-2 fuzzy approach to c-means. IEEE Trans. Fuzzy Syst. 2007, 15(1):107-120.
-
(2007)
IEEE Trans. Fuzzy Syst.
, vol.15
, Issue.1
, pp. 107-120
-
-
Hwang, C.1
Rhee, F.2
-
27
-
-
0035247535
-
Centroid of a type-2 fuzzy set
-
Karnik N.N., Mendel J.M. Centroid of a type-2 fuzzy set. Inf. Sci. 2001, 132:195-220.
-
(2001)
Inf. Sci.
, vol.132
, pp. 195-220
-
-
Karnik, N.N.1
Mendel, J.M.2
-
28
-
-
84867381731
-
General type-2 fuzzy c-means algorithm for uncertain fuzzy clustering
-
Linda O., Manic M. General type-2 fuzzy c-means algorithm for uncertain fuzzy clustering. IEEE Trans. Fuzzy Syst. 2013, 20(5):883-897.
-
(2013)
IEEE Trans. Fuzzy Syst.
, vol.20
, Issue.5
, pp. 883-897
-
-
Linda, O.1
Manic, M.2
-
29
-
-
9544250381
-
A cluster validation index for GK cluster analysis based on a relative degree of sharing
-
Kim Y., Kim D., Lee D., Lee K.H. A cluster validation index for GK cluster analysis based on a relative degree of sharing. Inf. Sci. 2004, 168:225-242.
-
(2004)
Inf. Sci.
, vol.168
, pp. 225-242
-
-
Kim, Y.1
Kim, D.2
Lee, D.3
Lee, K.H.4
-
30
-
-
0015644823
-
Cluster validity with fuzzy sets
-
Bezdek J.C. Cluster validity with fuzzy sets. Cybern. Syst. 1973, 3(3):58-73.
-
(1973)
Cybern. Syst.
, vol.3
, Issue.3
, pp. 58-73
-
-
Bezdek, J.C.1
-
31
-
-
36148971216
-
Validation criteria for enhanced fuzzy clustering
-
Celikyilmaz A., Turksen I.B. Validation criteria for enhanced fuzzy clustering. Pattern Recognit. Lett. 2008, 29:97-108.
-
(2008)
Pattern Recognit. Lett.
, vol.29
, pp. 97-108
-
-
Celikyilmaz, A.1
Turksen, I.B.2
-
34
-
-
59149086825
-
A comparative study of ranking methods, similarity measures, and uncertainty measures for interval type-2 fuzzy sets
-
Wu D., Mendel J.M. A comparative study of ranking methods, similarity measures, and uncertainty measures for interval type-2 fuzzy sets. Inf. Sci. 2009, 179:1169-1192.
-
(2009)
Inf. Sci.
, vol.179
, pp. 1169-1192
-
-
Wu, D.1
Mendel, J.M.2
-
36
-
-
80055031429
-
MiniMax ε-stable cluster validity index for type-2 fuzziness
-
Ozkan I., Turksen I.B. MiniMax ε-stable cluster validity index for type-2 fuzziness. Inf. Sci. 2012, 84:64-74.
-
(2012)
Inf. Sci.
, vol.84
, pp. 64-74
-
-
Ozkan, I.1
Turksen, I.B.2
-
38
-
-
33645552696
-
Effect of data normalization on fuzzy clustering of DNA microarray data
-
Kim S.Y., Lee J.W., Bae J.S. Effect of data normalization on fuzzy clustering of DNA microarray data. BMC Bioinf. 2006, 7(134):1-14.
-
(2006)
BMC Bioinf.
, vol.7
, Issue.134
, pp. 1-14
-
-
Kim, S.Y.1
Lee, J.W.2
Bae, J.S.3
-
41
-
-
84867357760
-
Monotone centroid flow algorithm for type reduction of general type-2 fuzzy sets
-
Linda O., Manic M. Monotone centroid flow algorithm for type reduction of general type-2 fuzzy sets. IEEE Trans. Fuzzy Syst. 2012, 20(5):805-819.
-
(2012)
IEEE Trans. Fuzzy Syst.
, vol.20
, Issue.5
, pp. 805-819
-
-
Linda, O.1
Manic, M.2
-
42
-
-
79958014397
-
Computing the centroid of a general type-2 fuzzy set by means of the centroid-flow algorithm
-
Zhai D., Mendel J.M. Computing the centroid of a general type-2 fuzzy set by means of the centroid-flow algorithm. IEEE Trans. Fuzzy Syst. 2011, 19(3):401-422.
-
(2011)
IEEE Trans. Fuzzy Syst.
, vol.19
, Issue.3
, pp. 401-422
-
-
Zhai, D.1
Mendel, J.M.2
-
43
-
-
70350064580
-
α-Plane representation for type-2 fuzzy sets: theory and application
-
Mendel J.M., Liu F., Zhai D. α-Plane representation for type-2 fuzzy sets: theory and application. IEEE Trans. Fuzzy Syst. 2009, 17(5):1189-1207.
-
(2009)
IEEE Trans. Fuzzy Syst.
, vol.17
, Issue.5
, pp. 1189-1207
-
-
Mendel, J.M.1
Liu, F.2
Zhai, D.3
-
44
-
-
39749103791
-
An efficient centroid type-reduction strategy for general type-2 fuzzy logic system
-
Liu F. An efficient centroid type-reduction strategy for general type-2 fuzzy logic system. Inf. Sci. 2008, 178:2224-2236.
-
(2008)
Inf. Sci.
, vol.178
, pp. 2224-2236
-
-
Liu, F.1
-
45
-
-
84901232103
-
A new cluster validity measure based on general type-2 fuzzy sets: application in gene expression data clustering
-
Doostparast Torshizi A., Fazel Zarandi M.H. A new cluster validity measure based on general type-2 fuzzy sets: application in gene expression data clustering. Knowl. Based Syst. 2014.
-
(2014)
Knowl. Based Syst.
-
-
Doostparast Torshizi, A.1
Fazel Zarandi, M.H.2
-
46
-
-
0032178397
-
Cluster validity index for fuzzy clustering
-
Kwon S.H. Cluster validity index for fuzzy clustering. Electron. Lett. 1998, 34(22):2176-2177.
-
(1998)
Electron. Lett.
, vol.34
, Issue.22
, pp. 2176-2177
-
-
Kwon, S.H.1
-
49
-
-
0023453329
-
Silhouettes: a graphical aid to the interpretation and validation of cluster analysis
-
Rousseeuv P. Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. J. Comput. Appl. Math. 1987, 20:53-65.
-
(1987)
J. Comput. Appl. Math.
, vol.20
, pp. 53-65
-
-
Rousseeuv, P.1
-
50
-
-
84940442362
-
-
Data clustering: a review, ACM Comput. Rev.
-
A. K. Jain, M. Murthy, P. Flynn, Data clustering: a review, ACM Comput. Rev.
-
-
-
Jain, A.K.1
Murthy, M.2
Flynn, P.3
-
51
-
-
33747830882
-
Clustering microarray gene expression data using weighted Chinese restaurant process
-
Qin Z.S. Clustering microarray gene expression data using weighted Chinese restaurant process. Bioinformatics 2006, 22(16):1988-1997.
-
(2006)
Bioinformatics
, vol.22
, Issue.16
, pp. 1988-1997
-
-
Qin, Z.S.1
-
52
-
-
84940442363
-
-
http://www.isical.ac.in/~bioinfo_miu/Data.html.
-
-
-
|