Elizabethkingia endophytica sp. nov., isolated from Zea mays and emended description of Elizabethkingia anophelis Kämpfer et al. 2011

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 7, 2015, Pages 2187-2193

  Kämpfer, Peter ^a   Busse, Hans Jürgen ^b   McInroy, John A ^c   Glaeser, Stefanie P ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^c AUBURN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; QUINONE DERIVATIVE; RNA 16S; SPERMIDINE; BACTERIAL DNA; FARNOQUINONE; SYM-HOMOSPERMIDINE;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; ELIZABETHKINGIA ANOPHELIS; ELIZABETHKINGIA ENDOPHYTICA; ELIZABETHKINGIA MENINGOSEPTICA; ELIZABETHKINGIA MIRICOLA; FATTY ACID ANALYSIS; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; MAIZE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; TYPE STRAIN; ANALOGS AND DERIVATIVES; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FLAVOBACTERIACEAE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PLANT STEM; UNITED STATES;

BACTERIA (MICROORGANISMS); ELIZABETHKINGIA; ELIZABETHKINGIA MENINGOSEPTICA; ELIZABETHKINGIA MIRICOLA; ZEA MAYS;

ALABAMA; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; FLAVOBACTERIACEAE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHATIDYLETHANOLAMINES; PHYLOGENY; PLANT STEMS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPERMIDINE; VITAMIN K 2; ZEA MAYS;

EID: 84940403611     PISSN: 14665026     EISSN: 14665034     Source Type: Journal    
DOI: 10.1099/ijs.0.000236     Document Type: Article

References (33)

1. Altenburger, P., Kä mpfer, P., Makristathis, A., Lubitz, W. & Busse, H.-J. (1996). Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47, 39-52.
2. Bernardet, J.-F., Bruun, B. & Hugo, C. (2006). The genera Chryseobacterium and Elizabethkingia. In The Prokaryotes, a Handbook on the Biology of Bacteria, pp. 638-676. Edited by M. Dworkin & other editors. 3rd edn. New York: Springer.
3. Brosius, J., Dull, T. J., Sleeter, D. D. & Noller, H. F. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127.
4. Busse, J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
5. Busse, H.-J., Bunka, S., Hensel, A. & Lubitz, W. (1997). Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47, 698-708.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Felsenstein, J. (2005). PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Seattle: Department of Genome Sciences, University of Washington.
8. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
9. Hamana, K. & Matsuzaki, S. (1990). Occurrence of homospermidine as a major polyamine in the authentic genus Flavobacterium. Can J Microbiol 36, 228-231.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of the protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
11. Kä mpfer, P. (1990). Evaluation of the Titertek-Enterobac-Automated System (TTE-AS) for identification of members of the family Enterobacteriaceae. Zentralbl Bakteriol 273, 164-172.
12. Kä mpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
13. Kä mpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
14. Kä mpfer, P., Dreyer, U., Neef, A., Dott, W. & Busse, H.-J. (2003). Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53, 93-97.
15. Kä mpfer, P., Matthews, H., Glaeser, S. P., Martin, K., Lodders, N. & Faye, I. (2011). Elizabethkingia anophelis sp. nov., isolated from the midgut of the mosquito Anopheles gambiae. Int J Syst Evol Microbiol 61, 2670-2675.
16. Kä mpfer, P., Poppel, M. T., Wilharm, G., Busse, H.-J., McInroy, J. A. & Glaeser, S. P. (2014). Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample. Int J Syst Evol Microbiol 64, 1419-1427.
17. Kim, K. K., Kim, M. K., Lim, J. H., Park, H. Y. & Lee, S. -T. (2005). Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int J Syst Evol Microbiol 55, 1287-1293.
18. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
19. Kook, M., Son, H.-M., Ngo, H. T. T. & Yi, T.-H. (2014). Chryseobacterium camelliae sp. nov., isolated from green tea. Int J Syst Evol Microbiol 64, 851-857.
20. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
21. Montero-Calasanz, M. C., Göker, M., Rohde, M., Spröer, C., Schumann, P., Busse, H.-J., Schmid, M., Tindall, B. J., Klenk, H.-P. & Camacho, M. (2013). Chryseobacterium hispalense sp. nov., a plant-growthpromoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. Int J Syst Evol Microbiol 63, 4386-4395.
22. Nguyen, N.-L., Kim, Y.-J., Hoang, V. A. & Yang, D.-C. (2013). Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum. Int J Syst Evol Microbiol 63, 2975-2980.
23. Pruesse, E., Peplies, J. & Glöckner, F. O. (2012). SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823-1829.
24. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. 2nd edn. New York: Springer.
25. Schumann, P. (2011). Peptidoglycan structure. In In Taxonomy of Prokaryotes, Methods in Microbiology, 38, pp. 101-129. Edited by F. Rainey & A. Oren. London: Academic Press.
26. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
27. Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690.
28. Stolz, A., Busse, H. J. & Kä mpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576.
29. Tindall, B. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
30. Tindall, B. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
31. Vandamme, P., Bernardet, J.-F., Segers, P., Kersters, K. & Holmes, B. (1994). New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44, 827-831.
32. Yarza, P., Richter, M., Peplies, J., Euzeby, J., Amann, R., Schleifer, K. H., Ludwig, W., Glöckner, F. O. & Rosselló-Móra, R. (2008). The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31, 241-250.
33. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.