-
1
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
Abecasis, G. R., Auton, A., Brooks, L. D., DePristo, M. A., Durbin, R. M., Handsaker, R. E., et al. (2012). An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65. doi: 10.1038/nature11632.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Abecasis, G.R.1
Auton, A.2
Brooks, L.D.3
DePristo, M.A.4
Durbin, R.M.5
Handsaker, R.E.6
-
2
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei, I. A., Schmidt, S., Peshkin, L., Ramensky, V. E., Gerasimova, A., Bork, P., et al. (2010). A method and server for predicting damaging missense mutations. Nat. Methods 7, 248-249. doi: 10.1038/nmeth0410-248.
-
(2010)
Nat. Methods
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
Ramensky, V.E.4
Gerasimova, A.5
Bork, P.6
-
3
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Altshuler, D., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., et al. (2010). A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073. doi: 10.1038/nature09534.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Altshuler, D.1
Durbin, R.M.2
Abecasis, G.R.3
Bentley, D.R.4
Chakravarti, A.5
Clark, A.G.6
-
5
-
-
84862929636
-
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data
-
Asmann, Y. W., Middha, S., Hossain, A., Baheti, S., Li, Y., Chai, H.-S., et al. (2012). TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinformatics 28, 277-278. doi: 10.1093/bioinformatics/btr612.
-
(2012)
Bioinformatics
, vol.28
, pp. 277-278
-
-
Asmann, Y.W.1
Middha, S.2
Hossain, A.3
Baheti, S.4
Li, Y.5
Chai, H.-S.6
-
6
-
-
84859583108
-
Opportunities and challenges for the integration of massively parallel genomic sequencing into clinical practice: lessons from the ClinSeq project
-
Biesecker, L. G. (2012). Opportunities and challenges for the integration of massively parallel genomic sequencing into clinical practice: lessons from the ClinSeq project. Genet. Med. 14, 393-398. doi: 10.1038/gim.2011.78.
-
(2012)
Genet. Med
, vol.14
, pp. 393-398
-
-
Biesecker, L.G.1
-
7
-
-
69749108657
-
The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine
-
Biesecker, L. G., Mullikin, J. C., Facio, F. M., Turner, C., Cherukuri, P. F., Blakesley, R. W., et al. (2009). The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine. Genome Res. 19, 1665-1674. doi: 10.1101/gr.092841.109.
-
(2009)
Genome Res
, vol.19
, pp. 1665-1674
-
-
Biesecker, L.G.1
Mullikin, J.C.2
Facio, F.M.3
Turner, C.4
Cherukuri, P.F.5
Blakesley, R.W.6
-
8
-
-
84857855694
-
Disclosing pathogenic genetic variants to research participants: quantifying an emerging ethical responsibility
-
Cassa, C. A., Savage, S. K., Taylor, P. L., Green, R. C., McGuire, A. L., and Mandl, K. D. (2012). Disclosing pathogenic genetic variants to research participants: quantifying an emerging ethical responsibility. Genome Res. 22, 421-428. doi: 10.1101/gr.127845.111.
-
(2012)
Genome Res
, vol.22
, pp. 421-428
-
-
Cassa, C.A.1
Savage, S.K.2
Taylor, P.L.3
Green, R.C.4
McGuire, A.L.5
Mandl, K.D.6
-
9
-
-
33746921634
-
The personal genome project
-
Church, G. M. (2005). The personal genome project. Mol. Syst. Biol. 1. doi: 10.1038/msb4100040.
-
(2005)
Mol. Syst. Biol
, vol.1
-
-
Church, G.M.1
-
10
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. A., Banks, E., Poplin, R., Garimella, K. V., Maguire, J. R., Hartl, C., et al. (2011). A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498. doi: 10.1038/ng.806.
-
(2011)
Nat. Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
-
11
-
-
84896769549
-
Clinical interpretation and implications of whole-genome sequencing
-
Dewey, F. E., Grove, M. E., Pan, C., Goldstein, B. A., Berstein, J. A., Chaib, H., et al. (2014). Clinical interpretation and implications of whole-genome sequencing. JAMA 311, 1035-1045. doi: 10.1001/jama.2014.1717.
-
(2014)
JAMA
, vol.311
, pp. 1035-1045
-
-
Dewey, F.E.1
Grove, M.E.2
Pan, C.3
Goldstein, B.A.4
Berstein, J.A.5
Chaib, H.6
-
12
-
-
84885295208
-
Actionable, pathogenic incidental findings in 1,000 participants' exomes
-
Dorschner, M. O., Amendola, L. M., Turner, E. H., Robertson, P. D., Shirts, B. H., Gallego, C. J., et al. (2013). Actionable, pathogenic incidental findings in 1,000 participants' exomes. Am. J. Hum. Genet. 93, 631-640. doi: 10.1016/j.ajhg.2013.08.006.
-
(2013)
Am. J. Hum. Genet
, vol.93
, pp. 631-640
-
-
Dorschner, M.O.1
Amendola, L.M.2
Turner, E.H.3
Robertson, P.D.4
Shirts, B.H.5
Gallego, C.J.6
-
13
-
-
84884700620
-
Novel TRAF1-ALK fusion identified by deep RNA sequencing of anaplastic large cell lymphoma
-
Feldman, A. L., Vasmatzis, G., Asmann, Y. W., Davila, J., Middha, S., Eckloff, B. W., et al. (2013). Novel TRAF1-ALK fusion identified by deep RNA sequencing of anaplastic large cell lymphoma. Genes Chromosomes Cancer. 52, 1097-1102. doi: 10.1002/gcc.22104.
-
(2013)
Genes Chromosomes Cancer
, vol.52
, pp. 1097-1102
-
-
Feldman, A.L.1
Vasmatzis, G.2
Asmann, Y.W.3
Davila, J.4
Middha, S.5
Eckloff, B.W.6
-
14
-
-
84872143942
-
Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants
-
Fu, W., O'Connor, T. D., Jun, G., Kang, H. M., Abecasis, G., Leal, S. M., et al. (2013). Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants. Nature 493, 216-220. doi: 10.1038/nature11690.
-
(2013)
Nature
, vol.493
, pp. 216-220
-
-
Fu, W.1
O'Connor, T.D.2
Jun, G.3
Kang, H.M.4
Abecasis, G.5
Leal, S.M.6
-
15
-
-
33751257201
-
Smad3 signaling involved in pulmonary fibrosis and emphysema
-
Gauldie, J., Kolb, M., Ask, K., Martin, G., Bonniaud, P., and Warburton, D. (2006). Smad3 signaling involved in pulmonary fibrosis and emphysema. Proc. Am. Thorac. Soc. 3, 696-702. doi: 10.1513/pats.200605-125SF.
-
(2006)
Proc. Am. Thorac. Soc
, vol.3
, pp. 696-702
-
-
Gauldie, J.1
Kolb, M.2
Ask, K.3
Martin, G.4
Bonniaud, P.5
Warburton, D.6
-
16
-
-
84880535720
-
ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing
-
Green, R. C., Berg, J. S., Grody, W. W., Kalia, S. S., Korf, B. R., Martin, C. L., et al. (2013). ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. Genet. Med. 15, 565-574. doi: 10.1038/gim.2013.73.
-
(2013)
Genet. Med
, vol.15
, pp. 565-574
-
-
Green, R.C.1
Berg, J.S.2
Grody, W.W.3
Kalia, S.S.4
Korf, B.R.5
Martin, C.L.6
-
17
-
-
84940110252
-
-
Selangor: Novocraft Technologies
-
Hercus, C. N. (2012). Novoalign. Selangor: Novocraft Technologies.
-
(2012)
Novoalign
-
-
Hercus, C.N.1
-
18
-
-
78049323331
-
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants
-
Li, Y., Vinckenbosch, N., Tian, G., Huerta-Sanchez, E., Jiang, T., Jiang, H., et al. (2010). Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat. Genet. 42, 969-972. doi: 10.1038/ng.680.
-
(2010)
Nat. Genet
, vol.42
, pp. 969-972
-
-
Li, Y.1
Vinckenbosch, N.2
Tian, G.3
Huerta-Sanchez, E.4
Jiang, T.5
Jiang, H.6
-
19
-
-
84863116742
-
A systematic survey of loss-of-function variants in human protein-coding genes
-
MacArthur, D. G., Balasubramanian, S., Frankish, A., Huang, N., Morris, J., Walter, K., et al. (2012). A systematic survey of loss-of-function variants in human protein-coding genes. Science 335, 823-828. doi: 10.1126/science.1215040.
-
(2012)
Science
, vol.335
, pp. 823-828
-
-
MacArthur, D.G.1
Balasubramanian, S.2
Frankish, A.3
Huang, N.4
Morris, J.5
Walter, K.6
-
20
-
-
84899476119
-
Guidelines for investigating causality of sequence variants in human disease
-
MacArthur, D. G., Manolio, T. A., Dimmock, D. P., Rehm, H. L., Shendure, J., Abecasis, G. R., et al. (2014). Guidelines for investigating causality of sequence variants in human disease. Nature 508, 469-476. doi: 10.1038/nature13127.
-
(2014)
Nature
, vol.508
, pp. 469-476
-
-
MacArthur, D.G.1
Manolio, T.A.2
Dimmock, D.P.3
Rehm, H.L.4
Shendure, J.5
Abecasis, G.R.6
-
21
-
-
77956295988
-
The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., et al. (2010). The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303. doi: 10.1101/gr.107524.110.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
-
22
-
-
0043122919
-
SIFT: predicting amino acid changes that affect protein function
-
Ng, P. C., and Henikoff, S. (2003). SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res. 31, 3812-3814. doi: 10.1093/nar/gkg509.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3812-3814
-
-
Ng, P.C.1
Henikoff, S.2
-
23
-
-
84940112011
-
-
Genome Variation Server (GVS), University of Washington
-
Ng, S. B., Robertson, P. D., and Nickerson, D. A. (2012). SeattleSeq Annotation Tool. Genome Variation Server (GVS), University of Washington.
-
(2012)
SeattleSeq Annotation Tool
-
-
Ng, S.B.1
Robertson, P.D.2
Nickerson, D.A.3
-
24
-
-
70249111091
-
Targeted capture and massively parallel sequencing of 12 human exomes
-
Ng, S. B., Turner, E. H., Robertson, P. D., Flygare, S. D., Bigham, A. W., Lee, C., et al. (2009). Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461, 272-276. doi: 10.1038/nature08250.
-
(2009)
Nature
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
Turner, E.H.2
Robertson, P.D.3
Flygare, S.D.4
Bigham, A.W.5
Lee, C.6
-
26
-
-
0040920369
-
-
Baltimore, MD: McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University
-
Online Mendelian Inheritance in Man. (1998). Online Mendelian Inheritance in Man. Baltimore, MD: McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University.
-
(1998)
Online Mendelian Inheritance in Man
-
-
-
27
-
-
84884648409
-
The Mayo Clinic Biobank: a building block for individualized medicine
-
Olson, J. E., Ryu, E., Johnson, K. J., Koenig, B. A., Maschke, K. J., Morrisette, J. A., et al. (2013). The Mayo Clinic Biobank: a building block for individualized medicine. Mayo Clin. Proc. 88, 952-962. doi: 10.1016/j.mayocp.2013.06.006.
-
(2013)
Mayo Clin. Proc
, vol.88
, pp. 952-962
-
-
Olson, J.E.1
Ryu, E.2
Johnson, K.J.3
Koenig, B.A.4
Maschke, K.J.5
Morrisette, J.A.6
-
28
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan, A. R., and Hall, I. M. (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842. doi: 10.1093/bioinformatics/btq033.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
29
-
-
0037903275
-
Human Gene Mutation Database (HGMD®): 2003 update
-
Stenson, P. D., Ball, E. V., Mort, M., Phillips, A. D., Shiel, J. A., Thomas, N. S. T., et al. (2003). Human Gene Mutation Database (HGMD®): 2003 update. Hum. Mutat. 21, 577-581. doi: 10.1002/humu.10212.
-
(2003)
Hum. Mutat
, vol.21
, pp. 577-581
-
-
Stenson, P.D.1
Ball, E.V.2
Mort, M.3
Phillips, A.D.4
Shiel, J.A.5
Thomas, N.S.T.6
-
30
-
-
84901982775
-
An evaluation of copy number variation detection tools from whole-exome sequencing data
-
Tan, R., Wang, Y., Kleinstein, S. E., Liu, Y., Zhu, X., Guo, H., et al. (2014). An evaluation of copy number variation detection tools from whole-exome sequencing data. Hum. Mutat. 35, 899-907. doi: 10.1002/humu.22537.
-
(2014)
Hum. Mutat
, vol.35
, pp. 899-907
-
-
Tan, R.1
Wang, Y.2
Kleinstein, S.E.3
Liu, Y.4
Zhu, X.5
Guo, H.6
-
31
-
-
84872407198
-
TGF-β-Smad3 signaling in emphysema and pulmonary fibrosis: an epigenetic aberration of normal development?
-
Warburton, D., Shi, W., and Xu, B. (2013). TGF-β-Smad3 signaling in emphysema and pulmonary fibrosis: an epigenetic aberration of normal development? Am. J. Physiol. Lung. Cell Mol. Physiol. 304, L83-L85. doi: 10.1152/ajplung.00258.2012.
-
(2013)
Am. J. Physiol. Lung. Cell Mol. Physiol
, vol.304
, pp. L83-L85
-
-
Warburton, D.1
Shi, W.2
Xu, B.3
|