메뉴 건너뛰기




Volumn 28, Issue 2, 2012, Pages 277-278

Treat: A bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPUTER PROGRAM; EXOME; HUMAN; METHODOLOGY; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

EID: 84862929636     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr612     Document Type: Article
Times cited : (55)

References (19)
  • 1
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge, W.J. (2009) Next-generation DNA sequencing techniques. New Biotechnol., 25, 195-203.
    • (2009) New Biotechnol , vol.25 , pp. 195-203
    • Ansorge, W.J.1
  • 2
    • 78149439208 scopus 로고    scopus 로고
    • Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome
    • Bonnefond, A. et al. (2010) Molecular diagnosis of neonatal diabetes mellitus using next-generation sequencing of the whole exome. PloS One, 5, e13630.
    • (2010) PloS One , vol.5
    • Bonnefond, A.1
  • 3
    • 77956393882 scopus 로고    scopus 로고
    • Exome sequencing identifies WDR35 variants involved in Sensenbrenner syndrome
    • Gilissen, C. et al. (2010) Exome sequencing identifies WDR35 variants involved in Sensenbrenner syndrome. Am. J. Hum. Genet., 87, 418-423.
    • (2010) Am. J. Hum. Genet. , vol.87 , pp. 418-423
    • Gilissen, C.1
  • 4
    • 77951957381 scopus 로고    scopus 로고
    • SNVMix: predicting single nucleotide variants from nextgeneration sequencing of tumors
    • Goya, R. et al. (2010) SNVMix: predicting single nucleotide variants from nextgeneration sequencing of tumors. Bioinformatics, 26, 730-736.
    • (2010) Bioinformatics , vol.26 , pp. 730-736
    • Goya, R.1
  • 5
    • 78649700287 scopus 로고    scopus 로고
    • Frequent mutation of BAP1 in metastasizing uveal melanomas
    • Harbour, J.W. et al. (2010) Frequent mutation of BAP1 in metastasizing uveal melanomas, Science, 330, 1410-1413.
    • (2010) Science , vol.330 , pp. 1410-1413
    • Harbour, J.W.1
  • 6
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar, P. et al. (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protocol., 4, 1073-1081.
    • (2009) Nat. Protocol. , vol.4 , pp. 1073-1081
    • Kumar, P.1
  • 7
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol, 10, R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1
  • 8
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 9
    • 77950475726 scopus 로고    scopus 로고
    • Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy
    • Lupski, J.R. et al. (2010) Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy. New Engl. J. Med., 362, 1181-1191.
    • (2010) New Engl. J. Med. , vol.362 , pp. 1181-1191
    • Lupski, J.R.1
  • 10
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 11
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker, M.L. (2010) Sequencing technologies - the next generation. Nature Rev., 11, 31-46.
    • (2010) Nature Rev. , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 12
    • 70249111091 scopus 로고    scopus 로고
    • Targeted capture and massively parallel sequencing of 12 human exomes
    • Ng, S.B. et al. (2009) Targeted capture and massively parallel sequencing of 12 human exomes, Nature, 461, 272-276.
    • (2009) Nature , vol.461 , pp. 272-276
    • Ng, S.B.1
  • 13
    • 73349110071 scopus 로고    scopus 로고
    • Exome sequencing identifies the cause of a mendelian disorder
    • Ng, S.B. et al. (2010) Exome sequencing identifies the cause of a mendelian disorder. Nat. Genet., 42, 30-35.
    • (2010) Nat. Genet. , vol.42 , pp. 30-35
    • Ng, S.B.1
  • 14
    • 77956486125 scopus 로고    scopus 로고
    • Next generation tools for genomic data generation, distribution, and visualization
    • Nix, D.A. et al. (2010) Next generation tools for genomic data generation, distribution, and visualization. BMC Bioinformatics, 11, 455.
    • (2010) BMC Bioinformatics , vol.11 , pp. 455
    • Nix, D.A.1
  • 15
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 16
    • 78650580271 scopus 로고    scopus 로고
    • GAMES identifies and annotates mutations in next-generation sequencing projects
    • Sana, M.E. et al. (2011) GAMES identifies and annotates mutations in next-generation sequencing projects. Bioinformatics, 27, 9-13.
    • (2011) Bioinformatics , vol.27 , pp. 9-13
    • Sana, M.E.1
  • 17
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster, S.C. (2008) Next-generation sequencing transforms today's biology. Nat. Methods, 5, 16-18.
    • (2008) Nat. Methods , vol.5 , pp. 16-18
    • Schuster, S.C.1
  • 18
    • 77956640112 scopus 로고    scopus 로고
    • SeqAnt: a web service to rapidly identify and annotate DNA sequence variations
    • Shetty, A.C. et al. (2010) SeqAnt: a web service to rapidly identify and annotate DNA sequence variations. BMC Bioinformatics, 11, 471.
    • (2010) BMC Bioinformatics , vol.11 , pp. 471
    • Shetty, A.C.1
  • 19
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: functional annotation of genetic variants from highthroughput sequencing data
    • Wang, K. et al. (2010)ANNOVAR: functional annotation of genetic variants from highthroughput sequencing data. Nucleic Acids Res., 38, e164.
    • (2010) Nucleic Acids Res. , vol.38
    • Wang, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.