-
1
-
-
79951970227
-
CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
-
Abyzov A, Urban AE, Snyder M, Gerstein M. 2011. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. Genome Res 21:974-984.
-
(2011)
Genome Res
, vol.21
, pp. 974-984
-
-
Abyzov, A.1
Urban, A.E.2
Snyder, M.3
Gerstein, M.4
-
2
-
-
79954672317
-
Genome structural variation discovery and genotyping
-
Alkan C, Coe BP, Eichler EE. 2011. Genome structural variation discovery and genotyping. Nat Rev Genet 12:363-376.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 363-376
-
-
Alkan, C.1
Coe, B.P.2
Eichler, E.E.3
-
3
-
-
70349556543
-
Personalized copy number and segmental duplication maps using next-generation sequencing
-
Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, Sahinalp SC, Gibbs RA, et al. 2009. Personalized copy number and segmental duplication maps using next-generation sequencing. Nat Genet 41:1061-1067.
-
(2009)
Nat Genet
, vol.41
, pp. 1061-1067
-
-
Alkan, C.1
Kidd, J.M.2
Marques-Bonet, T.3
Aksay, G.4
Antonacci, F.5
Hormozdiari, F.6
Kitzman, J.O.7
Baker, C.8
Malig, M.9
Mutlu, O.10
Sahinalp, S.C.11
Gibbs, R.A.12
-
4
-
-
84855982885
-
-
CONDEX: Copy number detection in exome sequences. Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference.
-
Ramachandran A, Micsinai M, Péer I. 2011. CONDEX: Copy number detection in exome sequences. Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference.
-
(2011)
-
-
Ramachandran, A.1
Micsinai, M.2
Péer, I.3
-
5
-
-
76349083132
-
Large, rare chromosomal deletions associated with severe early-onset obesity
-
Bochukova EG, Huang N, Keogh J, Henning E, Purmann C, Blaszczyk K, Saeed S, Hamilton-Shield J, Clayton-Smith J, O'Rahilly S, Hurles ME, Farooqi IS. 2010. Large, rare chromosomal deletions associated with severe early-onset obesity. Nature 463:666-670.
-
(2010)
Nature
, vol.463
, pp. 666-670
-
-
Bochukova, E.G.1
Huang, N.2
Keogh, J.3
Henning, E.4
Purmann, C.5
Blaszczyk, K.6
Saeed, S.7
Hamilton-Shield, J.8
Clayton-Smith, J.9
O'Rahilly, S.10
Hurles, M.E.11
Farooqi, I.S.12
-
6
-
-
76349083132
-
Large, rare chromosomal deletions associated with severe early-onset obesity
-
Bochukova EG, Huang N, Keogh J, Henning E, Purmann C, Blaszczyk K, Saeed S, Hamilton-Shield J, Clayton-Smith J, O'Rahilly S, Hurles ME, Farooqi IS. 2010. Large, rare chromosomal deletions associated with severe early-onset obesity. Nature 463:666-670.
-
(2010)
Nature
, vol.463
, pp. 666-670
-
-
Bochukova, E.G.1
Huang, N.2
Keogh, J.3
Henning, E.4
Purmann, C.5
Blaszczyk, K.6
Saeed, S.7
Hamilton-Shield, J.8
Clayton-Smith, J.9
O'Rahilly, S.10
Hurles, M.E.11
Farooqi, I.S.12
-
7
-
-
84856561659
-
Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
-
Boeva V, Popova T, Bleakley K, Chiche P, Cappo J, Schleiermacher G, Janoueix-Lerosey I, Delattre O, Barillot E. 2012. Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data. Bioinformatics 28:423-425.
-
(2012)
Bioinformatics
, vol.28
, pp. 423-425
-
-
Boeva, V.1
Popova, T.2
Bleakley, K.3
Chiche, P.4
Cappo, J.5
Schleiermacher, G.6
Janoueix-Lerosey, I.7
Delattre, O.8
Barillot, E.9
-
8
-
-
78651430230
-
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
-
Boeva V, Zinovyev A, Bleakley K, Vert JP, Janoueix-Lerosey I, Delattre O, Barillot E. 2011. Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization. Bioinformatics 27:268-269.
-
(2011)
Bioinformatics
, vol.27
, pp. 268-269
-
-
Boeva, V.1
Zinovyev, A.2
Bleakley, K.3
Vert, J.P.4
Janoueix-Lerosey, I.5
Delattre, O.6
Barillot, E.7
-
9
-
-
69549116107
-
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
-
Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, Shi X, Fulton RS, et al. 2009. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods 6:677-681.
-
(2009)
Nat Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
McGrath, S.D.7
Wendl, M.C.8
Zhang, Q.9
Locke, D.P.10
Shi, X.11
Fulton, R.S.12
-
10
-
-
84866464291
-
An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis
-
Coin LJ, Cao D, Ren J, Zuo X, Sun L, Yang S, Zhang X, Cui Y, Li Y, Jin X, Wang J. 2012. An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis. Bioinformatics 28:i370-i374.
-
(2012)
Bioinformatics
, vol.28
-
-
Coin, L.J.1
Cao, D.2
Ren, J.3
Zuo, X.4
Sun, L.5
Yang, S.6
Zhang, X.7
Cui, Y.8
Li, Y.9
Jin, X.10
Wang, J.11
-
11
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, Aerts J, Andrews TD, Barnes C, Campbell P, Fitzgerald T, Hu M, et al. 2010. Origins and functional impact of copy number variation in the human genome. Nature 464:704-712.
-
(2010)
Nature
, vol.464
, pp. 704-712
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
Zhang, Y.6
Aerts, J.7
Andrews, T.D.8
Barnes, C.9
Campbell, P.10
Fitzgerald, T.11
Hu, M.12
-
12
-
-
54049144653
-
Copy-number variations associated with neuropsychiatric conditions
-
Cook EH, Scherer SW. 2008. Copy-number variations associated with neuropsychiatric conditions. Nature 455:919-923.
-
(2008)
Nature
, vol.455
, pp. 919-923
-
-
Cook, E.H.1
Scherer, S.W.2
-
13
-
-
79959671356
-
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
-
Deng X. 2011. SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data. BMC Bioinformatics 12:267.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 267
-
-
Deng, X.1
-
14
-
-
84867280219
-
Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth
-
Fromer M, Moran JL, Chambert K, Banks E, Bergen SE, Ruderfer DM, Handsaker RE, McCarroll SA, O'Donovan MC, Owen MJ, Kirov G, Sullivan PF, et al. 2012. Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depth. Am J Hum Genet 91:597-607.
-
(2012)
Am J Hum Genet
, vol.91
, pp. 597-607
-
-
Fromer, M.1
Moran, J.L.2
Chambert, K.3
Banks, E.4
Bergen, S.E.5
Ruderfer, D.M.6
Handsaker, R.E.7
McCarroll, S.A.8
O'Donovan, M.C.9
Owen, M.J.10
Kirov, G.11
Sullivan, P.F.12
-
15
-
-
67349182343
-
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes
-
Glessner JT, Wang K, Cai GQ, Korvatska O, Kim CE, Wood S, Zhang HT, Estes A, Brune CW, Bradfield JP, Imielinski M, Frackelton EC, et al. 2009. Autism genome-wide copy number variation reveals ubiquitin and neuronal genes. Nature 459:569-573.
-
(2009)
Nature
, vol.459
, pp. 569-573
-
-
Glessner, J.T.1
Wang, K.2
Cai, G.Q.3
Korvatska, O.4
Kim, C.E.5
Wood, S.6
Zhang, H.T.7
Estes, A.8
Brune, C.W.9
Bradfield, J.P.10
Imielinski, M.11
Frackelton, E.C.12
-
16
-
-
84888990872
-
Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control
-
Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y. 2013. Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control. BioMed Res Int 2013:7.
-
(2013)
BioMed Res Int
, vol.2013
, pp. 7
-
-
Guo, Y.1
Sheng, Q.2
Samuels, D.C.3
Lehmann, B.4
Bauer, J.A.5
Pietenpol, J.6
Shyr, Y.7
-
17
-
-
77955163329
-
mrsFAST: a cache-oblivious algorithm for short-read mapping
-
Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. 2010. mrsFAST: a cache-oblivious algorithm for short-read mapping. Nat Methods 7:576-577.
-
(2010)
Nat Methods
, vol.7
, pp. 576-577
-
-
Hach, F.1
Hormozdiari, F.2
Alkan, C.3
Hormozdiari, F.4
Birol, I.5
Eichler, E.E.6
Sahinalp, S.C.7
-
18
-
-
79952194317
-
Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
-
Handsaker RE, Korn JM, Nemesh J, McCarroll SA. 2011. Discovery and genotyping of genome structural polymorphism by sequencing on a population scale. Nat Genet 43:269-276.
-
(2011)
Nat Genet
, vol.43
, pp. 269-276
-
-
Handsaker, R.E.1
Korn, J.M.2
Nemesh, J.3
McCarroll, S.A.4
-
19
-
-
77952096810
-
Rare deletions at 16p13.11 predispose to a diverse spectrum of sporadic epilepsy syndromes
-
Heinzen EL, Radtke RA, Urban TJ, Cavalleri GL, Depondt C, Need AC, Walley NM, Nicoletti P, Ge DL, Catarino CB, Duncan JS, Kasperaviciute D, et al. 2010. Rare deletions at 16p13.11 predispose to a diverse spectrum of sporadic epilepsy syndromes. Am J Hum Genet 86:707-718.
-
(2010)
Am J Hum Genet
, vol.86
, pp. 707-718
-
-
Heinzen, E.L.1
Radtke, R.A.2
Urban, T.J.3
Cavalleri, G.L.4
Depondt, C.5
Need, A.C.6
Walley, N.M.7
Nicoletti, P.8
Ge, D.L.9
Catarino, C.B.10
Duncan, J.S.11
Kasperaviciute, D.12
-
20
-
-
33644874573
-
The UCSC genome browser database: update 2006
-
Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, et al. 2006. The UCSC genome browser database: update 2006. Nucleic Acids Res 34(Database issue):D590-D598.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
Barber, G.P.4
Bejerano, G.5
Clawson, H.6
Diekhans, M.7
Furey, T.S.8
Harte, R.A.9
Hsu, F.10
Hillman-Jackson, J.11
Kuhn, R.M.12
-
21
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C. 2004. Detection of large-scale variation in the human genome. Nat Genet 36:949-951.
-
(2004)
Nat Genet
, vol.36
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
22
-
-
78649264297
-
De novo rates and selection of large copy number variation
-
Itsara A, Wu H, Smith JD, Nickerson DA, Romieu I, London SJ, Eichler EE. 2010. De novo rates and selection of large copy number variation. Genome Res 20:1469-1481.
-
(2010)
Genome Res
, vol.20
, pp. 1469-1481
-
-
Itsara, A.1
Wu, H.2
Smith, J.D.3
Nickerson, D.A.4
Romieu, I.5
London, S.J.6
Eichler, E.E.7
-
23
-
-
84861400043
-
cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
-
Klambauer G, Schwarzbauer K, Mayr A, Clevert DA, Mitterecker A, Bodenhofer U, Hochreiter S. 2012. cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. Nucleic Acids Res 40:e69.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Klambauer, G.1
Schwarzbauer, K.2
Mayr, A.3
Clevert, D.A.4
Mitterecker, A.5
Bodenhofer, U.6
Hochreiter, S.7
-
24
-
-
84863229597
-
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK. 2012. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22:568-576.
-
(2012)
Genome Res
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
Shen, D.4
McLellan, M.D.5
Lin, L.6
Miller, C.A.7
Mardis, E.R.8
Ding, L.9
Wilson, R.K.10
-
25
-
-
84885301258
-
Transmission disequilibrium of small CNVs in simplex autism
-
Krumm N, O'Roak BJ, Karakoc E, Mohajeri K, Nelson B, Vives L, Jacquemont S, Munson J, Bernier R, Eichler EE. 2013. Transmission disequilibrium of small CNVs in simplex autism. Am J Hum Genet 93:595-606.
-
(2013)
Am J Hum Genet
, vol.93
, pp. 595-606
-
-
Krumm, N.1
O'Roak, B.J.2
Karakoc, E.3
Mohajeri, K.4
Nelson, B.5
Vives, L.6
Jacquemont, S.7
Munson, J.8
Bernier, R.9
Eichler, E.E.10
-
26
-
-
84864609288
-
Copy number variation detection and genotyping from exome sequence data
-
Krumm N, Sudmant PH, Ko A, O'Roak BJ, Malig M, Coe BP, Project NES, Quinlan AR, Nickerson DA, Eichler EE. 2012. Copy number variation detection and genotyping from exome sequence data. Genome Res 22:1525-1532.
-
(2012)
Genome Res
, vol.22
, pp. 1525-1532
-
-
Krumm, N.1
Sudmant, P.H.2
Ko, A.3
O'Roak, B.J.4
Malig, M.5
Coe, B.P.6
Project, N.E.S.7
Quinlan, A.R.8
Nickerson, D.A.9
Eichler, E.E.10
-
27
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
28
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
29
-
-
84861135980
-
CONTRA: copy number analysis for targeted resequencing
-
Li J, Lupat R, Amarasinghe KC, Thompson ER, Doyle MA, Ryland GL, Tothill RW, Halgamuge SK, Campbell IG, Gorringe KL. 2012. CONTRA: copy number analysis for targeted resequencing. Bioinformatics 28:1307-1313.
-
(2012)
Bioinformatics
, vol.28
, pp. 1307-1313
-
-
Li, J.1
Lupat, R.2
Amarasinghe, K.C.3
Thompson, E.R.4
Doyle, M.A.5
Ryland, G.L.6
Tothill, R.W.7
Halgamuge, S.K.8
Campbell, I.G.9
Gorringe, K.L.10
-
30
-
-
84890244872
-
Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges
-
Liu B, Morrison CD, Johnson CS, Trump DL, Qin M, Conroy JC, Wang J, Liu S. 2013. Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges. Oncotarget 4(11):1868-1881.
-
(2013)
Oncotarget
, vol.4
, Issue.11
, pp. 1868-1881
-
-
Liu, B.1
Morrison, C.D.2
Johnson, C.S.3
Trump, D.L.4
Qin, M.5
Conroy, J.C.6
Wang, J.7
Liu, S.8
-
31
-
-
84886541754
-
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
-
Magi A, Tattini L, Cifola I, D'Aurizio R, Benelli M, Mangano E, Battaglia C, Bonora E, Kurg A, Seri M, Magini P, Giusti B, et al. 2013. EXCAVATOR: detecting copy number variants from whole-exome sequencing data. Genome Biol 14:R120.
-
(2013)
Genome Biol
, vol.14
-
-
Magi, A.1
Tattini, L.2
Cifola, I.3
D'Aurizio, R.4
Benelli, M.5
Mangano, E.6
Battaglia, C.7
Bonora, E.8
Kurg, A.9
Seri, M.10
Magini, P.11
Giusti, B.12
-
32
-
-
52949141845
-
Integrated detection and population-genetic analysis of SNPs and copy number variation
-
McCarroll SA, Kuruvilla FG, Korn JM, Cawley S, Nemesh J, Wysoker A, Shapero MH, de Bakker PI, Maller JB, Kirby A, Elliott AL, Parkin M, et al. 2008. Integrated detection and population-genetic analysis of SNPs and copy number variation. Nat Genet 40:1166-1174.
-
(2008)
Nat Genet
, vol.40
, pp. 1166-1174
-
-
McCarroll, S.A.1
Kuruvilla, F.G.2
Korn, J.M.3
Cawley, S.4
Nemesh, J.5
Wysoker, A.6
Shapero, M.H.7
de Bakker, P.I.8
Maller, J.B.9
Kirby, A.10
Elliott, A.L.11
Parkin, M.12
-
33
-
-
70449704529
-
Computational methods for discovering structural variation with next-generation sequencing
-
Medvedev P, Stanciu M, Brudno M. 2009. Computational methods for discovering structural variation with next-generation sequencing. Nat Methods 6(11 Suppl):S13-S20.
-
(2009)
Nat Methods
, vol.6
, Issue.SUPPL. 11
-
-
Medvedev, P.1
Stanciu, M.2
Brudno, M.3
-
34
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, et al. 2011. Mapping copy number variation by population-scale genome sequencing. Nature 470:59-65.
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
Walter, K.2
Stewart, C.3
Handsaker, R.E.4
Chen, K.5
Alkan, C.6
Abyzov, A.7
Yoon, S.C.8
Ye, K.9
Cheetham, R.K.10
Chinwalla, A.11
Conrad, D.F.12
-
35
-
-
70249111091
-
Targeted capture and massively parallel sequencing of 12 human exomes
-
Ng SB, Turner EH, Robertson PD, Flygare SD, Bigham AW, Lee C, Shaffer T, Wong M, Bhattacharjee A, Eichler EE, Bamshad M, Nickerson DA, et al. 2009. Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461:272-276.
-
(2009)
Nature
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
Turner, E.H.2
Robertson, P.D.3
Flygare, S.D.4
Bigham, A.W.5
Lee, C.6
Shaffer, T.7
Wong, M.8
Bhattacharjee, A.9
Eichler, E.E.10
Bamshad, M.11
Nickerson, D.A.12
-
36
-
-
77954657070
-
Functional impact of global rare copy number variation in autism spectrum disorders
-
Pinto D, Pagnamenta AT, Klei L, Anney R, Merico D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS, Almeida J, Bacchelli E, et al. 2010. Functional impact of global rare copy number variation in autism spectrum disorders. Nature 466:368-372.
-
(2010)
Nature
, vol.466
, pp. 368-372
-
-
Pinto, D.1
Pagnamenta, A.T.2
Klei, L.3
Anney, R.4
Merico, D.5
Regan, R.6
Conroy, J.7
Magalhaes, T.R.8
Correia, C.9
Abrahams, B.S.10
Almeida, J.11
Bacchelli, E.12
-
37
-
-
84868026566
-
A robust model for read count data in exome sequencing experiments and implications for copy number variant calling
-
Plagnol V, Curtis J, Epstein M, Mok KY, Stebbings E, Grigoriadou S, Wood NW, Hambleton S, Burns SO, Thrasher AJ, Kumararatne D, Doffinger R, et al. 2012. A robust model for read count data in exome sequencing experiments and implications for copy number variant calling. Bioinformatics 28:2747-2754.
-
(2012)
Bioinformatics
, vol.28
, pp. 2747-2754
-
-
Plagnol, V.1
Curtis, J.2
Epstein, M.3
Mok, K.Y.4
Stebbings, E.5
Grigoriadou, S.6
Wood, N.W.7
Hambleton, S.8
Burns, S.O.9
Thrasher, A.J.10
Kumararatne, D.11
Doffinger, R.12
-
38
-
-
84885222459
-
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder
-
Poultney CS, Goldberg AP, Drapeau E, Kou Y, Harony-Nicolas H, Kajiwara Y, De Rubeis S, Durand S, Stevens C, Rehnstrom K, Palotie A, Daly MJ, et al. 2013. Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder. Am J Hum Genet 93:607-619.
-
(2013)
Am J Hum Genet
, vol.93
, pp. 607-619
-
-
Poultney, C.S.1
Goldberg, A.P.2
Drapeau, E.3
Kou, Y.4
Harony-Nicolas, H.5
Kajiwara, Y.6
De Rubeis, S.7
Durand, S.8
Stevens, C.9
Rehnstrom, K.10
Palotie, A.11
Daly, M.J.12
-
39
-
-
84866462035
-
A regression model for estimating DNA copy number applied to capture sequencing data
-
Rigaill GJ, Cadot S, Kluin RJ, Xue Z, Bernards R, Majewski IJ, Wessels LF. 2012. A regression model for estimating DNA copy number applied to capture sequencing data. Bioinformatics 28:2357-2365.
-
(2012)
Bioinformatics
, vol.28
, pp. 2357-2365
-
-
Rigaill, G.J.1
Cadot, S.2
Kluin, R.J.3
Xue, Z.4
Bernards, R.5
Majewski, I.J.6
Wessels, L.F.7
-
40
-
-
80053446554
-
Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV
-
Sathirapongsasuti JF, Lee H, Horst BA, Brunner G, Cochran AJ, Binder S, Quackenbush J, Nelson SF. 2011. Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV. Bioinformatics 27:2648-2654.
-
(2011)
Bioinformatics
, vol.27
, pp. 2648-2654
-
-
Sathirapongsasuti, J.F.1
Lee, H.2
Horst, B.A.3
Brunner, G.4
Cochran, A.J.5
Binder, S.6
Quackenbush, J.7
Nelson, S.F.8
-
41
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, Maner S, Massa H, Walker M, Chi M, Navin N, Lucito R, et al. 2004. Large-scale copy number polymorphism in the human genome. Science 305:525-528.
-
(2004)
Science
, vol.305
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Maner, S.7
Massa, H.8
Walker, M.9
Chi, M.10
Navin, N.11
Lucito, R.12
-
42
-
-
84878302825
-
FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data
-
Shi Y, Majewski J. 2013. FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data. Bioinformatics 29:1461-1462.
-
(2013)
Bioinformatics
, vol.29
, pp. 1461-1462
-
-
Shi, Y.1
Majewski, J.2
-
43
-
-
77949831756
-
Structural variation in the human genome and its role in disease
-
Stankiewicz P, Lupski JR. 2010. Structural variation in the human genome and its role in disease. Annu Rev Med 61:437-455.
-
(2010)
Annu Rev Med
, vol.61
, pp. 437-455
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
44
-
-
49949085933
-
Large recurrent microdeletions associated with schizophrenia
-
Stefansson H, Rujescu D, Cichon S, Pietilainen OPH, Ingason A, Steinberg S, Fossdal R, Sigurdsson E, Sigmundsson T, Buizer-Voskamp JE, Hansen T, Jakobsen KD, et al. 2008. Large recurrent microdeletions associated with schizophrenia. Nature 455:U232-U261.
-
(2008)
Nature
, vol.455
-
-
Stefansson, H.1
Rujescu, D.2
Cichon, S.3
Pietilainen, O.P.H.4
Ingason, A.5
Steinberg, S.6
Fossdal, R.7
Sigurdsson, E.8
Sigmundsson, T.9
Buizer-Voskamp, J.E.10
Hansen, T.11
Jakobsen, K.D.12
-
45
-
-
84863970074
-
De novo mutations in human genetic disease
-
Veltman JA, Brunner HG. 2012. De novo mutations in human genetic disease. Nat Rev Genet 13:565-575.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 565-575
-
-
Veltman, J.A.1
Brunner, H.G.2
-
46
-
-
84874776644
-
A survey of copy-number variation detection tools based on high-throughput sequencing data
-
Chapter 7:Unit7
-
Xi R, Lee S, Park PJ. 2012. A survey of copy-number variation detection tools based on high-throughput sequencing data. Curr Protoc Hum Genet Chapter 7:Unit7 19.
-
(2012)
Curr Protoc Hum Genet
, pp. 19
-
-
Xi, R.1
Lee, S.2
Park, P.J.3
-
47
-
-
84866092268
-
Using ERDS to infer copy-number variants in high-coverage genomes
-
Zhu M, Need AC, Han Y, Ge D, Maia JM, Zhu Q, Heinzen EL, Cirulli ET, Pelak K, He M, Ruzzo EK, Gumbs C, et al. 2012. Using ERDS to infer copy-number variants in high-coverage genomes. Am J Hum Genet 91:408-421.
-
(2012)
Am J Hum Genet
, vol.91
, pp. 408-421
-
-
Zhu, M.1
Need, A.C.2
Han, Y.3
Ge, D.4
Maia, J.M.5
Zhu, Q.6
Heinzen, E.L.7
Cirulli, E.T.8
Pelak, K.9
He, M.10
Ruzzo, E.K.11
Gumbs, C.12
|