-
1
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
COI: 1:CAS:528:DC%2BC3cXhs1Sisbc%3D, PID: 20124702
-
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66:213–221
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
3
-
-
79954535895
-
Crystal structure of calcium dodecin (Rv0379), from Mycobacterium tuberculosis with a unique calcium-binding site
-
COI: 1:CAS:528:DC%2BC3MXks1ahu7g%3D, PID: 21370306
-
Arockiasamy A, Aggarwal A, Savva CG, Holzenburg A, Sacchettini JC (2011) Crystal structure of calcium dodecin (Rv0379), from Mycobacterium tuberculosis with a unique calcium-binding site. Protein Sci 20:827–833
-
(2011)
Protein Sci
, vol.20
, pp. 827-833
-
-
Arockiasamy, A.1
Aggarwal, A.2
Savva, C.G.3
Holzenburg, A.4
Sacchettini, J.C.5
-
4
-
-
0036234420
-
Microbial carboxyl esterases: classification, properties and application in biocatalysis
-
COI: 1:CAS:528:DC%2BD38Xjtl2itL4%3D, PID: 12007643
-
Bornscheuer UT (2002) Microbial carboxyl esterases: classification, properties and application in biocatalysis. FEMS Microbiol Rev 26:73–81
-
(2002)
FEMS Microbiol Rev
, vol.26
, pp. 73-81
-
-
Bornscheuer, U.T.1
-
5
-
-
37349110734
-
Fitting molecular fragments into electron density
-
COI: 1:CAS:528:DC%2BD2sXhsVGjt7bK, PID: 18094471
-
Cowtan K (2008) Fitting molecular fragments into electron density. Acta Crystallogr D Biol Crystallogr 64:83–89
-
(2008)
Acta Crystallogr D Biol Crystallogr
, vol.64
, pp. 83-89
-
-
Cowtan, K.1
-
7
-
-
77949535720
-
Features and development of Coot
-
COI: 1:CAS:528:DC%2BC3cXksFKisb8%3D, PID: 20383002
-
Emsley P, Lohkamp B, Scott W, Cowtan K (2010) Features and development of Coot. Acta Crystallogr D Biol Crystallogr 66:486–501
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.3
Cowtan, K.4
-
8
-
-
84896419055
-
Surface engineering of a cutinase from Thermobifida cellulosilytica for improved polyester hydrolysis
-
COI: 1:CAS:528:DC%2BC3sXms1KksLY%3D, PID: 23592055
-
Herrero Acero E, Ribitsch D, Dellacher A, Zitzenbacher S, Marold A, Steinkellner G, Gruber K, Schwab H, Guebitz GM (2013) Surface engineering of a cutinase from Thermobifida cellulosilytica for improved polyester hydrolysis. Biotechnol Bioeng 110:2581–2590
-
(2013)
Biotechnol Bioeng
, vol.110
, pp. 2581-2590
-
-
Herrero Acero, E.1
Ribitsch, D.2
Dellacher, A.3
Zitzenbacher, S.4
Marold, A.5
Steinkellner, G.6
Gruber, K.7
Schwab, H.8
Guebitz, G.M.9
-
9
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
COI: 1:CAS:528:DyaK2cXptFeltw%3D%3D
-
Kabsch W (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 26:795–800
-
(1993)
J Appl Crystallogr
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
10
-
-
84977771496
-
2+-activated, thermostabilized polyesterase capable of hydrolyzing polyethylene terephthalate from Saccharomonospora viridis AHK190
-
2+-activated, thermostabilized polyesterase capable of hydrolyzing polyethylene terephthalate from Saccharomonospora viridis AHK190. Appl Microbiol Biotechnol 95:419–430
-
(2014)
Appl Microbiol Biotechnol
, vol.95
, pp. 419-430
-
-
Kawai, F.1
Oda, M.2
Tamashiro, T.3
Waku, T.4
Tanaka, N.5
Yamamoto, M.6
Mizushima, H.7
Miyakawa, T.8
Tanokura, M.9
-
11
-
-
0034134257
-
Thermostable lipase of Bacillus stearothermophilus: high-level production, purification, and calcium-dependent thermostability
-
COI: 1:CAS:528:DC%2BD3cXhvVCjtro%3D, PID: 10737182
-
Kim MH, Kim HK, Lee JK, Park SY, Oh TK (2000) Thermostable lipase of Bacillus stearothermophilus: high-level production, purification, and calcium-dependent thermostability. Biosci Biotechnol Biochem 64:280–286
-
(2000)
Biosci Biotechnol Biochem
, vol.64
, pp. 280-286
-
-
Kim, M.H.1
Kim, H.K.2
Lee, J.K.3
Park, S.Y.4
Oh, T.K.5
-
12
-
-
84863418333
-
Crystal structure of cutinase Est119 from Thermobifida alba AHK119 that can degrade modified polyethylene terephthalate at 1.76 Å resolution
-
COI: 1:CAS:528:DC%2BC38Xjt1elsrY%3D
-
Kitadokoro K, Thumarat U, Nakamura R, Nishimura K, Karatani H, Suzuki H, Kawai F (2012) Crystal structure of cutinase Est119 from Thermobifida alba AHK119 that can degrade modified polyethylene terephthalate at 1.76 Å resolution. Polym Degrad Stab 97:771–775
-
(2012)
Polym Degrad Stab
, vol.97
, pp. 771-775
-
-
Kitadokoro, K.1
Thumarat, U.2
Nakamura, R.3
Nishimura, K.4
Karatani, H.5
Suzuki, H.6
Kawai, F.7
-
13
-
-
0037441653
-
Structure validation by Cα geometry: φ, ψ and Cβ deviation
-
COI: 1:CAS:528:DC%2BD3sXpvVKlsA%3D%3D, PID: 12557186
-
Lovell SC, Davis IW, Arendall WB III, de Bakker PIW, Word JM, Prisant MG, Richardson JS, Richardson DC (2003) Structure validation by Cα geometry: φ, ψ and Cβ deviation. Proteins 50:437–450
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall, W.B.3
de Bakker, P.I.W.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
14
-
-
0028933531
-
Crystal structure of calcium-depleted Bacillus licheniformis alpha-amylase at 2.2 Å resolution
-
COI: 1:CAS:528:DyaK2MXktF2rsbo%3D, PID: 7877175
-
Machius M, Wiegand G, Huber R (1995) Crystal structure of calcium-depleted Bacillus licheniformis alpha-amylase at 2.2 Å resolution. J Mol Biol 246:545–559
-
(1995)
J Mol Biol
, vol.246
, pp. 545-559
-
-
Machius, M.1
Wiegand, G.2
Huber, R.3
-
15
-
-
13144305048
-
Activation of Bacillus licheniformis alpha-amylase through a disorder → order transition of the substrate-binding site mediated by a calcium-sodium-calcium metal triad
-
COI: 1:CAS:528:DyaK1cXisFSlsrk%3D, PID: 9551551
-
Machius M, Declerck N, Huber R, Wiegand G (1998) Activation of Bacillus licheniformis alpha-amylase through a disorder → order transition of the substrate-binding site mediated by a calcium-sodium-calcium metal triad. Structure 6:281–292
-
(1998)
Structure
, vol.6
, pp. 281-292
-
-
Machius, M.1
Declerck, N.2
Huber, R.3
Wiegand, G.4
-
17
-
-
24944479050
-
Enzymatic degradation of poly(ethylene terephthalate): rapid hydrolysis using a hydrolase from Thermobifida fusca
-
Müller RJ, Schrader H, Profe J, Dresler K, Deckwer WD (2005) Enzymatic degradation of poly(ethylene terephthalate): rapid hydrolysis using a hydrolase from Thermobifida fusca. Macromol Rapid Commun 26:1400–1405
-
(2005)
Macromol Rapid Commun
, vol.26
, pp. 1400-1405
-
-
Müller, R.J.1
Schrader, H.2
Profe, J.3
Dresler, K.4
Deckwer, W.D.5
-
18
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
COI: 1:STN:280:DC%2BD2czpsFegsw%3D%3D, PID: 15299926
-
Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53:240–255
-
(1997)
Acta Crystallogr D Biol Crystallogr
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
19
-
-
37249005205
-
The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability
-
COI: 1:CAS:528:DC%2BD2sXhtFagsb7N, PID: 17853878
-
Niesen FH, Berglund H, Vadadi M (2007) The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability. Nat Protoc 2:2212–2221
-
(2007)
Nat Protoc
, vol.2
, pp. 2212-2221
-
-
Niesen, F.H.1
Berglund, H.2
Vadadi, M.3
-
20
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
COI: 1:CAS:528:DyaK2sXivFehsbw%3D
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307–326
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
22
-
-
59349095484
-
Cutinases: properties and industrial applications
-
COI: 1:CAS:528:DC%2BD1MXks1yns7o%3D, PID: 19203649
-
Pio TF, Macedo GA (2009) Cutinases: properties and industrial applications. Adv Appl Microbiol 66:77–95
-
(2009)
Adv Appl Microbiol
, vol.66
, pp. 77-95
-
-
Pio, T.F.1
Macedo, G.A.2
-
23
-
-
84878820905
-
Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis
-
COI: 1:CAS:528:DC%2BC3sXotlegtb0%3D, PID: 23718548
-
Ribitsch D, Yebra AO, Zitzenbacher S, Wu J, Nowitsch S, Steinkellner G, Greimel K, Doliska A, Oberdorfer G, Gruber CC, Gruber K, Schwab H, Stana-Kleinschek K, Acero EH, Guebitz GM (2013) Fusion of binding domains to Thermobifida cellulosilytica cutinase to tune sorption characteristics and enhancing PET hydrolysis. Biomacromolecules 14:1769–1776
-
(2013)
Biomacromolecules
, vol.14
, pp. 1769-1776
-
-
Ribitsch, D.1
Yebra, A.O.2
Zitzenbacher, S.3
Wu, J.4
Nowitsch, S.5
Steinkellner, G.6
Greimel, K.7
Doliska, A.8
Oberdorfer, G.9
Gruber, C.C.10
Gruber, K.11
Schwab, H.12
Stana-Kleinschek, K.13
Acero, E.H.14
Guebitz, G.M.15
-
24
-
-
67651095678
-
Cutinase-catalyzed hydrolysis of poly(ethylene terephthalate)
-
COI: 1:CAS:528:DC%2BD1MXotVGksb0%3D
-
Ronkvist Å, Xie W, Lu W, Gross RA (2009) Cutinase-catalyzed hydrolysis of poly(ethylene terephthalate). Macromolecules 42:5128–5138
-
(2009)
Macromolecules
, vol.42
, pp. 5128-5138
-
-
Ronkvist, Å.1
Xie, W.2
Lu, W.3
Gross, R.A.4
-
25
-
-
84906944065
-
-
Roth C, Wei R, Oeser T, Then J, Föllner C, Zimmermann W, Sträter N (2014) Structural and functional studies on a thermostable polyethylene terephthalate degrading hydrolase from Thermobifida fusca. Appl Microbiol Biotechnol, in press
-
Roth C, Wei R, Oeser T, Then J, Föllner C, Zimmermann W, Sträter N (2014) Structural and functional studies on a thermostable polyethylene terephthalate degrading hydrolase from Thermobifida fusca. Appl Microbiol Biotechnol, in press
-
-
-
-
26
-
-
0033524456
-
Identification of a calcium binding site in Staphylococcus hyicus lipase: generation of calcium-independent variants
-
COI: 1:CAS:528:DyaK1cXnvVKlsLo%3D, PID: 9890877
-
Simons JFA, Van Kampen MD, Ubarretxena-Belandia I, Cox RC, Alves dos Santos CM, Egmond MR, Verheij HM (1999) Identification of a calcium binding site in Staphylococcus hyicus lipase: generation of calcium-independent variants. Biochemistry 38:2–10
-
(1999)
Biochemistry
, vol.38
, pp. 2-10
-
-
Simons, J.F.A.1
Van Kampen, M.D.2
Ubarretxena-Belandia, I.3
Cox, R.C.4
Alves dos Santos, C.M.5
Egmond, M.R.6
Verheij, H.M.7
-
27
-
-
84897051705
-
Crystal structure and thermodynamic and kinetic stability of metagenome-derived LC-cutinase
-
COI: 1:CAS:528:DC%2BC2cXjsVehs7w%3D
-
Sulaiman S, You D-J, Kanaya E, Koga Y, Kanaya S (2014) Crystal structure and thermodynamic and kinetic stability of metagenome-derived LC-cutinase. Biogeosciences 53:1858–1869
-
(2014)
Biogeosciences
, vol.53
, pp. 1858-1869
-
-
Sulaiman, S.1
You, D.-J.2
Kanaya, E.3
Koga, Y.4
Kanaya, S.5
-
28
-
-
84864717982
-
Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119
-
COI: 1:CAS:528:DC%2BC38XotlSks74%3D, PID: 22183084
-
Thumarat U, Nakamura R, Kawabata T, Suzuki H, Kawai F (2012) Biochemical and genetic analysis of a cutinase-type polyesterase from a thermophilic Thermobifida alba AHK119. Appl Microbiol Biotechnol 95:419–430
-
(2012)
Appl Microbiol Biotechnol
, vol.95
, pp. 419-430
-
-
Thumarat, U.1
Nakamura, R.2
Kawabata, T.3
Suzuki, H.4
Kawai, F.5
-
29
-
-
0000560808
-
MOLREP: an automated program for molecular replacement
-
COI: 1:CAS:528:DyaK1cXhslehu7Y%3D
-
Vagin A, Teplyakov A (1997) MOLREP: an automated program for molecular replacement. J Appl Crystallogr 30:1022–1025
-
(1997)
J Appl Crystallogr
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
31
-
-
84947032242
-
Functional characterization and structural modeling of synthetic polyester-degrading hydrolases from Thermomonospora curvata
-
PID: 25405080
-
Wei R, Oeser T, Then J, Kühn N, Barth M, Schmidt J, Zimmermann W (2014) Functional characterization and structural modeling of synthetic polyester-degrading hydrolases from Thermomonospora curvata. AMB Express 4:44
-
(2014)
AMB Express
, vol.4
, pp. 44
-
-
Wei, R.1
Oeser, T.2
Then, J.3
Kühn, N.4
Barth, M.5
Schmidt, J.6
Zimmermann, W.7
-
32
-
-
84861996396
-
2
-
COI: 1:CAS:528:DC%2BC38XnsVGjsL8%3D, PID: 22542853
-
2. Int J Biol Macromol 51:146–2152
-
(2012)
Int J Biol Macromol
, vol.51
, pp. 146-2152
-
-
Yadav, J.K.1
-
33
-
-
84878008702
-
Enhanced activity toward PET by site-directed mutagenesis of Thermobifida fusca cutinase-CBM fusion protein
-
COI: 1:CAS:528:DC%2BC3sXpsV2gsLk%3D, PID: 23769527
-
Zhang Y, Wang L, Chen J, Wu J (2013) Enhanced activity toward PET by site-directed mutagenesis of Thermobifida fusca cutinase-CBM fusion protein. Carbohydr Polym 97:124–129
-
(2013)
Carbohydr Polym
, vol.97
, pp. 124-129
-
-
Zhang, Y.1
Wang, L.2
Chen, J.3
Wu, J.4
-
34
-
-
82055202956
-
Enzymes for the biofunctionalization of poly(ethylene terephthalate)
-
COI: 1:CAS:528:DC%2BC3MXhs1KisrvO
-
Zimmermann W, Billig S (2011) Enzymes for the biofunctionalization of poly(ethylene terephthalate). Adv Biochem Engin/Biotechnol 125:97–120
-
(2011)
Adv Biochem Engin/Biotechnol
, vol.125
, pp. 97-120
-
-
Zimmermann, W.1
Billig, S.2
|