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Volumn 59, Issue 4, 2015, Pages 541-552

Division of Labor in an Oligomer of the DEAD-Box RNA Helicase Ded1p

Author keywords

[No Author keywords available]

Indexed keywords

DEAD BOX PROTEIN; INITIATION FACTOR 4G; OLIGOMER; ADENOSINE TRIPHOSPHATE; DED1 PROTEIN, S CEREVISIAE; DOUBLE STRANDED RNA; PROTEIN BINDING; PROTEIN SUBUNIT; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84939561955     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2015.06.030     Document Type: Article
Times cited : (54)

References (42)
  • 1
    • 41649101221 scopus 로고    scopus 로고
    • The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies
    • Beckham C., Hilliker A., Cziko A.M., Noueiry A., Ramaswami M., Parker R. The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies. Mol. Biol. Cell 2008, 19:984-993.
    • (2008) Mol. Biol. Cell , vol.19 , pp. 984-993
    • Beckham, C.1    Hilliker, A.2    Cziko, A.M.3    Noueiry, A.4    Ramaswami, M.5    Parker, R.6
  • 2
    • 2942754127 scopus 로고    scopus 로고
    • Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases
    • Bizebard T., Ferlenghi I., Iost I., Dreyfus M. Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases. Biochemistry 2004, 43:7857-7866.
    • (2004) Biochemistry , vol.43 , pp. 7857-7866
    • Bizebard, T.1    Ferlenghi, I.2    Iost, I.3    Dreyfus, M.4
  • 5
    • 0030614360 scopus 로고    scopus 로고
    • Requirement of the DEAD-Box protein ded1p for messenger RNA translation
    • Chuang R.Y., Weaver P.L., Liu Z., Chang T.H. Requirement of the DEAD-Box protein ded1p for messenger RNA translation. Science 1997, 275:1468-1471.
    • (1997) Science , vol.275 , pp. 1468-1471
    • Chuang, R.Y.1    Weaver, P.L.2    Liu, Z.3    Chang, T.H.4
  • 8
    • 84856220770 scopus 로고    scopus 로고
    • Unwinding initiation by the viral RNA helicase NPH-II
    • Fairman-Williams M.E., Jankowsky E. Unwinding initiation by the viral RNA helicase NPH-II. J. Mol. Biol. 2012, 415:819-832.
    • (2012) J. Mol. Biol. , vol.415 , pp. 819-832
    • Fairman-Williams, M.E.1    Jankowsky, E.2
  • 10
    • 33845738802 scopus 로고    scopus 로고
    • Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity
    • Halls C., Mohr S., Del Campo M., Yang Q., Jankowsky E., Lambowitz A.M. Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity. J. Mol. Biol. 2007, 365:835-855.
    • (2007) J. Mol. Biol. , vol.365 , pp. 835-855
    • Halls, C.1    Mohr, S.2    Del Campo, M.3    Yang, Q.4    Jankowsky, E.5    Lambowitz, A.M.6
  • 11
    • 77956715760 scopus 로고    scopus 로고
    • Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif
    • Hardin J.W., Hu Y.X., McKay D.B. Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif. J. Mol. Biol. 2010, 402:412-427.
    • (2010) J. Mol. Biol. , vol.402 , pp. 412-427
    • Hardin, J.W.1    Hu, Y.X.2    McKay, D.B.3
  • 12
    • 84861385163 scopus 로고    scopus 로고
    • ATP utilization and RNA conformational rearrangement by DEAD-box proteins
    • Henn A., Bradley M.J., De La Cruz E.M. ATP utilization and RNA conformational rearrangement by DEAD-box proteins. Annu. Rev. Biophys. 2012, 41:247-267.
    • (2012) Annu. Rev. Biophys. , vol.41 , pp. 247-267
    • Henn, A.1    Bradley, M.J.2    De La Cruz, E.M.3
  • 13
    • 80053022305 scopus 로고    scopus 로고
    • The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex
    • Hilliker A., Gao Z., Jankowsky E., Parker R. The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex. Mol. Cell 2011, 43:962-972.
    • (2011) Mol. Cell , vol.43 , pp. 962-972
    • Hilliker, A.1    Gao, Z.2    Jankowsky, E.3    Parker, R.4
  • 14
    • 0033580840 scopus 로고    scopus 로고
    • Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase
    • Iost I., Dreyfus M., Linder P. Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase. J. Biol. Chem. 1999, 274:17677-17683.
    • (1999) J. Biol. Chem. , vol.274 , pp. 17677-17683
    • Iost, I.1    Dreyfus, M.2    Linder, P.3
  • 15
    • 0026099337 scopus 로고
    • A suppressor of a yeast splicing mutation (prp8-1) encodes a putative ATP-dependent RNA helicase
    • Jamieson D.J., Rahe B., Pringle J., Beggs J.D. A suppressor of a yeast splicing mutation (prp8-1) encodes a putative ATP-dependent RNA helicase. Nature 1991, 349:715-717.
    • (1991) Nature , vol.349 , pp. 715-717
    • Jamieson, D.J.1    Rahe, B.2    Pringle, J.3    Beggs, J.D.4
  • 16
    • 0034719392 scopus 로고    scopus 로고
    • The DExH protein NPH-II is a processive and directional motor for unwinding RNA
    • Jankowsky E., Gross C.H., Shuman S., Pyle A.M. The DExH protein NPH-II is a processive and directional motor for unwinding RNA. Nature 2000, 403:447-451.
    • (2000) Nature , vol.403 , pp. 447-451
    • Jankowsky, E.1    Gross, C.H.2    Shuman, S.3    Pyle, A.M.4
  • 17
  • 18
    • 84904631841 scopus 로고    scopus 로고
    • DEAD-box protein CYT-19 is activated by exposed helices in a group I intron RNA
    • Jarmoskaite I., Bhaskaran H., Seifert S., Russell R. DEAD-box protein CYT-19 is activated by exposed helices in a group I intron RNA. Proc. Natl. Acad. Sci. USA 2014, 111:E2928-E2936.
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. E2928-E2936
    • Jarmoskaite, I.1    Bhaskaran, H.2    Seifert, S.3    Russell, R.4
  • 19
    • 70449127384 scopus 로고    scopus 로고
    • Rational extension of the ribosome biogenesis pathway using network-guided genetics
    • Li Z., Lee I., Moradi E., Hung N.J., Johnson A.W., Marcotte E.M. Rational extension of the ribosome biogenesis pathway using network-guided genetics. PLoS Biol. 2009, 7:e1000213.
    • (2009) PLoS Biol. , vol.7
    • Li, Z.1    Lee, I.2    Moradi, E.3    Hung, N.J.4    Johnson, A.W.5    Marcotte, E.M.6
  • 20
    • 79960724199 scopus 로고    scopus 로고
    • From unwinding to clamping-the DEAD box RNA helicase family
    • Linder P., Jankowsky E. From unwinding to clamping-the DEAD box RNA helicase family. Nat. Rev. Mol. Cell Biol. 2011, 12:505-516.
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 505-516
    • Linder, P.1    Jankowsky, E.2
  • 22
    • 58149481225 scopus 로고    scopus 로고
    • ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
    • Liu F., Putnam A., Jankowsky E. ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding. Proc. Natl. Acad. Sci. USA 2008, 105:20209-20214.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 20209-20214
    • Liu, F.1    Putnam, A.2    Jankowsky, E.3
  • 23
    • 84892717305 scopus 로고    scopus 로고
    • DEAD-box helicases form nucleotide-dependent, long-lived complexes with RNA
    • Liu F., Putnam A.A., Jankowsky E. DEAD-box helicases form nucleotide-dependent, long-lived complexes with RNA. Biochemistry 2014, 53:423-433.
    • (2014) Biochemistry , vol.53 , pp. 423-433
    • Liu, F.1    Putnam, A.A.2    Jankowsky, E.3
  • 24
    • 42449141601 scopus 로고    scopus 로고
    • Non-hexameric DNA helicases and translocases: mechanisms and regulation
    • Lohman T.M., Tomko E.J., Wu C.G. Non-hexameric DNA helicases and translocases: mechanisms and regulation. Nat. Rev. Mol. Cell Biol. 2008, 9:391-401.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 391-401
    • Lohman, T.M.1    Tomko, E.J.2    Wu, C.G.3
  • 26
    • 84867064003 scopus 로고    scopus 로고
    • Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p
    • Mallam A.L., Del Campo M., Gilman B., Sidote D.J., Lambowitz A.M. Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p. Nature 2012, 490:121-125.
    • (2012) Nature , vol.490 , pp. 121-125
    • Mallam, A.L.1    Del Campo, M.2    Gilman, B.3    Sidote, D.J.4    Lambowitz, A.M.5
  • 27
    • 2542580178 scopus 로고    scopus 로고
    • The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer
    • Minshall N., Standart N. The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer. Nucleic Acids Res. 2004, 32:1325-1334.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1325-1334
    • Minshall, N.1    Standart, N.2
  • 28
    • 35348971984 scopus 로고    scopus 로고
    • ATPase site architecture and helicase mechanism of an archaeal MCM
    • Moreau M.J., McGeoch A.T., Lowe A.R., Itzhaki L.S., Bell S.D. ATPase site architecture and helicase mechanism of an archaeal MCM. Mol. Cell 2007, 28:304-314.
    • (2007) Mol. Cell , vol.28 , pp. 304-314
    • Moreau, M.J.1    McGeoch, A.T.2    Lowe, A.R.3    Itzhaki, L.S.4    Bell, S.D.5
  • 31
    • 84863000049 scopus 로고    scopus 로고
    • Analysis of duplex unwinding by RNA helicases using stopped-flow fluorescence spectroscopy
    • Putnam A., Jankowsky E. Analysis of duplex unwinding by RNA helicases using stopped-flow fluorescence spectroscopy. Methods Enzymol. 2012, 511:1-27.
    • (2012) Methods Enzymol. , vol.511 , pp. 1-27
    • Putnam, A.1    Jankowsky, E.2
  • 32
    • 84885184394 scopus 로고    scopus 로고
    • AMP sensing by DEAD-box RNA helicases
    • Putnam A.A., Jankowsky E. AMP sensing by DEAD-box RNA helicases. J. Mol. Biol. 2013, 425:3839-3845.
    • (2013) J. Mol. Biol. , vol.425 , pp. 3839-3845
    • Putnam, A.A.1    Jankowsky, E.2
  • 33
    • 84877923560 scopus 로고    scopus 로고
    • DEAD-box helicases as integrators of RNA, nucleotide and protein binding
    • Putnam A.A., Jankowsky E. DEAD-box helicases as integrators of RNA, nucleotide and protein binding. Biochim. Biophys. Acta 2013, 1829:884-893.
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 884-893
    • Putnam, A.A.1    Jankowsky, E.2
  • 34
    • 0040142238 scopus 로고    scopus 로고
    • Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A
    • Rogers G.W., Richter N.J., Merrick W.C. Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A. J. Biol. Chem. 1999, 274:12236-12244.
    • (1999) J. Biol. Chem. , vol.274 , pp. 12236-12244
    • Rogers, G.W.1    Richter, N.J.2    Merrick, W.C.3
  • 35
    • 44449134820 scopus 로고    scopus 로고
    • A practical guide to single-molecule FRET
    • Roy R., Hohng S., Ha T. A practical guide to single-molecule FRET. Nat. Methods 2008, 5:507-516.
    • (2008) Nat. Methods , vol.5 , pp. 507-516
    • Roy, R.1    Hohng, S.2    Ha, T.3
  • 36
    • 33746853440 scopus 로고    scopus 로고
    • Crystal structure and nucleotide binding of the Thermus thermophilus RNA helicase Hera N-terminal domain
    • Rudolph M.G., Heissmann R., Wittmann J.G., Klostermeier D. Crystal structure and nucleotide binding of the Thermus thermophilus RNA helicase Hera N-terminal domain. J. Mol. Biol. 2006, 361:731-743.
    • (2006) J. Mol. Biol. , vol.361 , pp. 731-743
    • Rudolph, M.G.1    Heissmann, R.2    Wittmann, J.G.3    Klostermeier, D.4
  • 37
    • 84904633999 scopus 로고    scopus 로고
    • The Ded1/DDX3 subfamily of DEAD-box RNA helicases
    • Sharma D., Jankowsky E. The Ded1/DDX3 subfamily of DEAD-box RNA helicases. Crit. Rev. Biochem. Mol. Biol. 2014, 49:343-360.
    • (2014) Crit. Rev. Biochem. Mol. Biol. , vol.49 , pp. 343-360
    • Sharma, D.1    Jankowsky, E.2
  • 38
    • 33750936780 scopus 로고    scopus 로고
    • Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone
    • Tijerina P., Bhaskaran H., Russell R. Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone. Proc. Natl. Acad. Sci. USA 2006, 103:16698-16703.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 16698-16703
    • Tijerina, P.1    Bhaskaran, H.2    Russell, R.3
  • 39
    • 26644450709 scopus 로고    scopus 로고
    • ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1
    • Yang Q., Jankowsky E. ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1. Biochemistry 2005, 44:13591-13601.
    • (2005) Biochemistry , vol.44 , pp. 13591-13601
    • Yang, Q.1    Jankowsky, E.2
  • 40
    • 33750593917 scopus 로고    scopus 로고
    • The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases
    • Yang Q., Jankowsky E. The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases. Nat. Struct. Mol. Biol. 2006, 13:981-986.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 981-986
    • Yang, Q.1    Jankowsky, E.2
  • 41
    • 35348941874 scopus 로고    scopus 로고
    • DEAD-box proteins unwind duplexes by local strand separation
    • Yang Q., Del Campo M., Lambowitz A.M., Jankowsky E. DEAD-box proteins unwind duplexes by local strand separation. Mol. Cell 2007, 28:253-263.
    • (2007) Mol. Cell , vol.28 , pp. 253-263
    • Yang, Q.1    Del Campo, M.2    Lambowitz, A.M.3    Jankowsky, E.4
  • 42
    • 34147111663 scopus 로고    scopus 로고
    • DEAD-box-protein-assisted RNA structure conversion towards and against thermodynamic equilibrium values
    • Yang Q., Fairman M.E., Jankowsky E. DEAD-box-protein-assisted RNA structure conversion towards and against thermodynamic equilibrium values. J. Mol. Biol. 2007, 368:1087-1100.
    • (2007) J. Mol. Biol. , vol.368 , pp. 1087-1100
    • Yang, Q.1    Fairman, M.E.2    Jankowsky, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.