-
1
-
-
84863910171
-
CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set
-
Epub 2012/07/18. doi: 0008-5472.CAN-12-1370 [pii] PMID: 22802077; PubMed Central PMCID: PMC3399763
-
Reinhold WC, Sunshine M, Liu H, Varma S, Kohn KW, Morris J, et al. CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set. Cancer Res. 2012; 72(14):3499-511. Epub 2012/07/18. doi: 0008-5472.CAN-12-1370 [pii] doi: 10.1158/0008-5472.CAN-12-1370 PMID: 22802077; PubMed Central PMCID: PMC3399763.
-
(2012)
Cancer Res
, vol.72
, Issue.14
, pp. 3499-3511
-
-
Reinhold, W.C.1
Sunshine, M.2
Liu, H.3
Varma, S.4
Kohn, K.W.5
Morris, J.6
-
2
-
-
33646541046
-
Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel
-
Epub 2006/05/02. doi: 5/4/853 [pii] PMID: 16648555; PubMed Central PMCID: PMC2733874
-
Bussey KJ, Chin K, Lababidi S, Reimers M, Reinhold WC, Kuo WL, et al. Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel. Mol Cancer Ther. 2006; 5(4):853-67. Epub 2006/05/02. doi: 5/4/853 [pii] doi: 10.1158/1535-7163.MCT-05-0155 PMID: 16648555; PubMed Central PMCID: PMC2733874.
-
(2006)
Mol Cancer Ther.
, vol.5
, Issue.4
, pp. 853-867
-
-
Bussey, K.J.1
Chin, K.2
Lababidi, S.3
Reimers, M.4
Reinhold, W.C.5
Kuo, W.L.6
-
3
-
-
34548799629
-
A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery
-
Epub 2007/08/02. doi: 0610292104 [pii] PMID: 17666531; PubMed Central PMCID: PMC1941805
-
Lee JK, Havaleshko DM, Cho H, Weinstein JN, Kaldjian EP, Karpovich J, et al. A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery. Proc Natl Acad Sci U S A. 2007; 104(32):13086-91. Epub 2007/08/02. doi: 0610292104 [pii] doi: 10.1073/pnas.0610292104 PMID: 17666531; PubMed Central PMCID: PMC1941805.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.32
, pp. 13086-13091
-
-
Lee, J.K.1
Havaleshko, D.M.2
Cho, H.3
Weinstein, J.N.4
Kaldjian, E.P.5
Karpovich, J.6
-
4
-
-
0023721279
-
Development of human tumor cell line panels for use in disease-oriented drug screening
-
Epub 1988/01/01. PMID: 3051021
-
Shoemaker RH, Monks A, Alley MC, Scudiero DA, Fine DL, McLemore TL, et al. Development of human tumor cell line panels for use in disease-oriented drug screening. Prog Clin Biol Res. 1988; 276:265-86. Epub 1988/01/01. PMID: 3051021.
-
(1988)
Prog Clin Biol Res
, vol.276
, pp. 265-286
-
-
Shoemaker, R.H.1
Monks, A.2
Alley, M.C.3
Scudiero, D.A.4
Fine, D.L.5
McLemore, T.L.6
-
5
-
-
0031035181
-
An information-intensive approach to the molecular pharmacology of cancer
-
Epub 1997/01/17. PMID: 8994024
-
Weinstein JN, Myers TG, O'Connor PM, Friend SH, Fornace AJ Jr., Kohn KW, et al. An information-intensive approach to the molecular pharmacology of cancer. Science. 1997; 275(5298):343-9. Epub 1997/01/17. PMID: 8994024.
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 343-349
-
-
Weinstein, J.N.1
Myers, T.G.2
O'Connor, P.M.3
Friend, S.H.4
Fornace, A.J.5
Kohn, K.W.6
-
6
-
-
1542577328
-
Comparing cDNA and oligonucleotide array data: Concordance of gene expression across platforms for the NCI-60 cancer cells
-
Epub 2003/12/09. PMID: 14659019; PubMed Central PMCID: PMC329421
-
Lee JK, Bussey KJ, Gwadry FG, Reinhold W, Riddick G, Pelletier SL, et al. Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells. Genome Biol. 2003; 4(12):R82. Epub 2003/12/09. doi: 10.1186/gb-2003-4-12-r82 gb-2003-4-12-r82 [pii] PMID: 14659019; PubMed Central PMCID: PMC329421.
-
(2003)
Genome Biol
, vol.4
, Issue.12
, pp. R82
-
-
Lee, J.K.1
Bussey, K.J.2
Gwadry, F.G.3
Reinhold, W.4
Riddick, G.5
Pelletier, S.L.6
-
7
-
-
10744226821
-
Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
-
Epub 2003/11/19. [pii] PMID: 14623978; PubMed Central PMCID: PMC283574
-
Nishizuka S, Charboneau L, Young L, Major S, Reinhold WC, Waltham M, et al. Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays. Proc Natl Acad Sci U S A. 2003; 100(24):14229-34. Epub 2003/11/19. doi: 10.1073/pnas.2331323100 2331323100 [pii] PMID: 14623978; PubMed Central PMCID: PMC283574.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.24
, pp. 14229-14234
-
-
Nishizuka, S.1
Charboneau, L.2
Young, L.3
Major, S.4
Reinhold, W.C.5
Waltham, M.6
-
8
-
-
33847405772
-
Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells
-
Epub 2007/02/03. doi: 1535-7163.MCT-06-0609 [pii] PMID: 17272646
-
Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, et al. Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells. Mol Cancer Ther. 2007; 6 (2):391-403. Epub 2007/02/03. doi: 1535-7163.MCT-06-0609 [pii] doi: 10.1158/1535-7163.MCT-06-0609 PMID: 17272646.
-
(2007)
Mol Cancer Ther
, vol.6
, Issue.2
, pp. 391-403
-
-
Reinhold, W.C.1
Reimers, M.A.2
Maunakea, A.K.3
Kim, S.4
Lababidi, S.5
Scherf, U.6
-
9
-
-
34250697605
-
MicroRNA expression profiles for the NCI-60 cancer cell panel
-
Epub 2007/05/08. doi: 1535-7163. MCT-07-0009 [pii] PMID: 17483436
-
Blower PE, Verducci JS, Lin S, Zhou J, Chung JH, Dai Z, et al. MicroRNA expression profiles for the NCI-60 cancer cell panel. Mol Cancer Ther. 2007; 6(5):1483-91. Epub 2007/05/08. doi: 1535-7163. MCT-07-0009 [pii] doi: 10.1158/1535-7163.MCT-07-0009 PMID: 17483436.
-
(2007)
Mol Cancer Ther
, vol.6
, Issue.5
, pp. 1483-1491
-
-
Blower, P.E.1
Verducci, J.S.2
Lin, S.3
Zhou, J.4
Chung, J.H.5
Dai, Z.6
-
10
-
-
34447555632
-
A multivariate analysis approach to the integration of proteomic and gene expression data
-
Epub 2007/06/06. PMID: 17549791
-
Fagan A, Culhane AC, Higgins DG. A multivariate analysis approach to the integration of proteomic and gene expression data. Proteomics. 2007; 7(13):2162-71. Epub 2007/06/06. doi: 10.1002/pmic.200600898 PMID: 17549791.
-
(2007)
Proteomics
, vol.7
, Issue.13
, pp. 2162-2171
-
-
Fagan, A.1
Culhane, A.C.2
Higgins, D.G.3
-
11
-
-
33845200848
-
Mutation analysis of 24 known cancer genes in the NCI-60 cell line set
-
Epub 2006/11/08. doi: 1535-7163.MCT-06-0433 [pii] PMID: 17088437; PubMed Central PMCID: PMC2705832
-
Ikediobi ON, Davies H, Bignell G, Edkins S, Stevens C, O'Meara S, et al. Mutation analysis of 24 known cancer genes in the NCI-60 cell line set. Mol Cancer Ther. 2006; 5(11):2606-12. Epub 2006/11/08. doi: 1535-7163.MCT-06-0433 [pii] doi: 10.1158/1535-7163.MCT-06-0433 PMID: 17088437; PubMed Central PMCID: PMC2705832.
-
(2006)
Mol Cancer Ther
, vol.5
, Issue.11
, pp. 2606-2612
-
-
Ikediobi, O.N.1
Davies, H.2
Bignell, G.3
Edkins, S.4
Stevens, C.5
O'Meara, S.6
-
12
-
-
84859187259
-
Systematic identification of genomic markers of drug sensitivity in cancer cells
-
Epub 2012/03/31. [pii] PMID: 22460902; PubMed Central PMCID: PMC3349233
-
Garnett MJ, Edelman EJ, Heidorn SJ, Greenman CD, Dastur A, Lau KW, et al. Systematic identification of genomic markers of drug sensitivity in cancer cells. Nature. 2012; 483(7391):570-5. Epub 2012/03/31. doi: 10.1038/nature11005 nature11005 [pii] PMID: 22460902; PubMed Central PMCID: PMC3349233.
-
(2012)
Nature
, vol.483
, Issue.7391
, pp. 570-575
-
-
Garnett, M.J.1
Edelman, E.J.2
Heidorn, S.J.3
Greenman, C.D.4
Dastur, A.5
Lau, K.W.6
-
13
-
-
84859169877
-
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
-
Epub 2012/03/31. [pii] PMID: 22460905; PubMed Central PMCID: PMC3320027
-
Barretina J, Caponigro G, Stransky N, Venkatesan K, Margolin AA, Kim S, et al. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature. 2012; 483 (7391):603-7. Epub 2012/03/31. doi: 10.1038/nature11003 nature11003 [pii] PMID: 22460905; PubMed Central PMCID: PMC3320027.
-
(2012)
Nature
, vol.483
, Issue.7391
, pp. 603-607
-
-
Barretina, J.1
Caponigro, G.2
Stransky, N.3
Venkatesan, K.4
Margolin, A.A.5
Kim, S.6
-
14
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
Epub 2002/12/20. [pii] PMID: 12490681
-
van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med. 2002; 347(25):1999-2009. Epub 2002/12/20. doi: 10.1056/NEJMoa021967 347/25/1999 [pii] PMID: 12490681.
-
(2002)
N Engl J Med
, vol.347
, Issue.25
, pp. 1999-2009
-
-
Van De Vijver, M.J.1
He, Y.D.2
Van'T Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
-
15
-
-
19944422061
-
A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
-
Epub 2004/12/14. doi: NEJMoa041588 [pii] PMID: 15591335
-
Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, et al. A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N Engl J Med. 2004; 351(27):2817-26. Epub 2004/12/14. doi: NEJMoa041588 [pii] doi: 10.1056/NEJMoa041588 PMID: 15591335.
-
(2004)
N Engl J Med
, vol.351
, Issue.27
, pp. 2817-2826
-
-
Paik, S.1
Shak, S.2
Tang, G.3
Kim, C.4
Baker, J.5
Cronin, M.6
-
16
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
Epub 2010/08/03. doi: nbt.1665 [pii] PMID: 20676074; PubMed Central PMCID: PMC3315840
-
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, et al. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol. 2010; 28(8):827-38. Epub 2010/08/03. doi: nbt.1665 [pii] doi: 10.1038/nbt.1665 PMID: 20676074; PubMed Central PMCID: PMC3315840.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.8
, pp. 827-838
-
-
Shi, L.1
Campbell, G.2
Jones, W.D.3
Campagne, F.4
Wen, Z.5
Walker, S.J.6
-
17
-
-
33745779502
-
The molecular classification of multiple myeloma
-
Epub 2006/05/27. doi: blood-2005-11-013458 [pii] PMID: 16728703; PubMed Central PMCID: PMC1895543
-
Zhan F, Huang Y, Colla S, Stewart JP, Hanamura I, Gupta S, et al. The molecular classification of multiple myeloma. Blood. 2006; 108(6):2020-8. Epub 2006/05/27. doi: blood-2005-11-013458 [pii] doi: 10.1182/blood-2005-11-013458 PMID: 16728703; PubMed Central PMCID: PMC1895543.
-
(2006)
Blood
, vol.108
, Issue.6
, pp. 2020-2028
-
-
Zhan, F.1
Huang, Y.2
Colla, S.3
Stewart, J.P.4
Hanamura, I.5
Gupta, S.6
-
18
-
-
33947217497
-
A validated gene expression model of high-risk multiple myeloma is defined by deregulated expression of genes mapping to chromosome 1
-
Epub 2006/11/16. doi: blood-2006-07-038430 [pii] PMID: 17105813
-
Shaughnessy JD Jr., Zhan F, Burington BE, Huang Y, Colla S, Hanamura I, et al. A validated gene expression model of high-risk multiple myeloma is defined by deregulated expression of genes mapping to chromosome 1. Blood. 2007; 109(6):2276-84. Epub 2006/11/16. doi: blood-2006-07-038430 [pii] doi: 10.1182/blood-2006-07-038430 PMID: 17105813.
-
(2007)
Blood
, vol.109
, Issue.6
, pp. 2276-2284
-
-
Shaughnessy, J.D.1
Zhan, F.2
Burington, B.E.3
Huang, Y.4
Colla, S.5
Hanamura, I.6
-
19
-
-
38349088637
-
High-risk myeloma: A gene expression based risk-stratification model for newly diagnosed multiple myeloma treated with high-dose therapy is predictive of outcome in relapsed disease treated with single-agent bortezomib or high-dose dexamethasone
-
Epub 2008/01/10. doi: 111/2/968 [pii] PMID: 18182586; PubMed Central PMCID: PMC2200846
-
Zhan F, Barlogie B, Mulligan G, Shaughnessy JD Jr., Bryant B. High-risk myeloma: a gene expression based risk-stratification model for newly diagnosed multiple myeloma treated with high-dose therapy is predictive of outcome in relapsed disease treated with single-agent bortezomib or high-dose dexamethasone. Blood. 2008; 111(2):968-9. Epub 2008/01/10. doi: 111/2/968 [pii] doi: 10.1182/blood-2007-10-119321 PMID: 18182586; PubMed Central PMCID: PMC2200846.
-
(2008)
Blood
, vol.111
, Issue.2
, pp. 968-969
-
-
Zhan, F.1
Barlogie, B.2
Mulligan, G.3
Shaughnessy, J.D.4
Bryant, B.5
-
20
-
-
54249092519
-
Prediction of survival in multiple myeloma based on gene expression profiles reveals cell cycle and chromosomal instability signatures in high-risk patients and hyperdiploid signatures in low-risk patients: A study of the Intergroupe Francophone du Myelome
-
Epub 2008/07/02. [pii] PMID: 18591550
-
Decaux O, Lode L, Magrangeas F, Charbonnel C, Gouraud W, Jezequel P, et al. Prediction of survival in multiple myeloma based on gene expression profiles reveals cell cycle and chromosomal instability signatures in high-risk patients and hyperdiploid signatures in low-risk patients: a study of the Intergroupe Francophone du Myelome. J Clin Oncol. 2008; 26(29):4798-805. Epub 2008/07/02. doi: 10.1200/JCO.2007.13.8545 JCO.2007.13.8545 [pii] PMID: 18591550.
-
(2008)
J Clin Oncol
, vol.26
, Issue.29
, pp. 4798-4805
-
-
Decaux, O.1
Lode, L.2
Magrangeas, F.3
Charbonnel, C.4
Gouraud, W.5
Jezequel, P.6
-
21
-
-
34147129816
-
Gene expression profiling and correlation with outcome in clinical trials of the proteasome inhibitor bortezomib
-
Epub 2006/12/23. doi: blood-2006-09-044974 [pii] PMID: 17185464
-
Mulligan G, Mitsiades C, Bryant B, Zhan F, Chng WJ, Roels S, et al. Gene expression profiling and correlation with outcome in clinical trials of the proteasome inhibitor bortezomib. Blood. 2007; 109 (8):3177-88. Epub 2006/12/23. doi: blood-2006-09-044974 [pii] doi: 10.1182/blood-2006-09-044974 PMID: 17185464.
-
(2007)
Blood
, vol.109
, Issue.8
, pp. 3177-3188
-
-
Mulligan, G.1
Mitsiades, C.2
Bryant, B.3
Zhan, F.4
Chng, W.J.5
Roels, S.6
-
22
-
-
84886752897
-
Batch effect removal methods for microarray gene expression data integration: A survey
-
Epub 2012/08/02. PMID: 22851511
-
Lazar C, Meganck S, Taminau J, Steenhoff D, Coletta A, Molter C, et al. Batch effect removal methods for microarray gene expression data integration: a survey. Briefings in bioinformatics. 2013; 14(4):469-90. Epub 2012/08/02. doi: 10.1093/bib/bbs037 PMID: 22851511.
-
(2013)
Briefings in Bioinformatics
, vol.14
, Issue.4
, pp. 469-490
-
-
Lazar, C.1
Meganck, S.2
Taminau, J.3
Steenhoff, D.4
Coletta, A.5
Molter, C.6
-
23
-
-
84894638720
-
GENESHIFT: A nonparametric approach for integrating microarray gene expression data based on the inner product as a distance measure between the distributions of genes
-
Epub 2013/08/10. PMID: 23929862
-
Lazar C, Taminau J, Meganck S, Steenhoff D, Coletta A, Solis DY, et al. GENESHIFT: a nonparametric approach for integrating microarray gene expression data based on the inner product as a distance measure between the distributions of genes. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM. 2013; 10(2):383-92. Epub 2013/08/10. doi: 10.1109/TCBB.2013.12 PMID: 23929862.
-
(2013)
IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM
, vol.10
, Issue.2
, pp. 383-392
-
-
Lazar, C.1
Taminau, J.2
Meganck, S.3
Steenhoff, D.4
Coletta, A.5
Solis, D.Y.6
-
25
-
-
33646036758
-
The response of human epithelial cells to TNF involves an inducible autocrine cascade
-
Epub 2006/03/28. PMID: 16564013
-
Janes KA, Gaudet S, Albeck JG, Nielsen UB, Lauffenburger DA, Sorger PK. The response of human epithelial cells to TNF involves an inducible autocrine cascade. Cell. 2006; 124(6):1225-39. Epub 2006/03/28. doi: S0092-8674(06)00292-3 [pii] doi: 10.1016/j.cell.2006.01.041 PMID: 16564013.
-
(2006)
Cell
, vol.124
, Issue.6
, pp. 1225-1239
-
-
Janes, K.A.1
Gaudet, S.2
Albeck, J.G.3
Nielsen, U.B.4
Lauffenburger, D.A.5
Sorger, P.K.6
-
27
-
-
79957857433
-
The BATTLE trial: Personalizing therapy for lung cancer
-
Epub 2012/05/16. doi: 2159-8274. CD-10-0010 [pii] PMID: 22586319
-
Kim ES, Herbst RS, Wistuba II, Lee JJ, Blumenschein GR Jr., Tsao A, et al. The BATTLE trial: personalizing therapy for lung cancer. Cancer Discov. 2011; 1(1):44-53. Epub 2012/05/16. doi: 2159-8274. CD-10-0010 [pii] doi: 10.1158/2159-8274.CD-10-0010 PMID: 22586319.
-
(2011)
Cancer Discov
, vol.1
, Issue.1
, pp. 44-53
-
-
Kim, E.S.1
Herbst, R.S.2
Wistuba, I.I.3
Lee, J.J.4
Blumenschein, G.R.5
Tsao, A.6
-
28
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Hochberg Y. The control of the false discovery rate in multiple testing under dependency. Annals of Statistics. 1995; 29:1165-88.
-
(1995)
Annals of Statistics.
, vol.29
, pp. 1165-1188
-
-
Benjamini, Y.1
Hochberg, Y.2
-
29
-
-
67849118749
-
Expression quantitative trait loci mapping with multivariate sparse partial least squares regression
-
Epub 2009/03/10. PMID: 19270271; PubMed Central PMCID: PMC2674843
-
Chun H, Keles S. Expression quantitative trait loci mapping with multivariate sparse partial least squares regression. Genetics. 2009; 182(1):79-90. Epub 2009/03/10. doi: 10.1534/genetics.109.100362 PMID: 19270271; PubMed Central PMCID: PMC2674843.
-
(2009)
Genetics
, vol.182
, Issue.1
, pp. 79-90
-
-
Chun, H.1
Keles, S.2
-
30
-
-
74049093630
-
Sparse partial least squares regression for simultaneous dimension reduction and variable selection
-
Epub 2010/01/29. PMID: 20107611; PubMed Central PMCID: PMC2810828
-
Chun H, Keles S. Sparse partial least squares regression for simultaneous dimension reduction and variable selection. Journal of the Royal Statistical Society Series B, Statistical methodology. 2010; 72 (1):3-25. Epub 2010/01/29. doi: 10.1111/j.1467-9868.2009.00723.x PMID: 20107611; PubMed Central PMCID: PMC2810828.
-
(2010)
Journal of the Royal Statistical Society Series B, Statistical Methodology
, vol.72
, Issue.1
, pp. 3-25
-
-
Chun, H.1
Keles, S.2
-
31
-
-
79959258968
-
Sparse PLS discriminant analysis: Biologically relevant feature selection and graphical displays for multiclass problems
-
Epub 2011/06/23. doi: 1471-2105-12-253 [pii] PMID: 21693065; PubMed Central PMCID: PMC3133555
-
Le Cao KA, Boitard S, Besse P. Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC Bioinformatics. 2011; 12:253. Epub 2011/06/23. doi: 1471-2105-12-253 [pii] doi: 10.1186/1471-2105-12-253 PMID: 21693065; PubMed Central PMCID: PMC3133555.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 253
-
-
Le Cao, K.A.1
Boitard, S.2
Besse, P.3
-
32
-
-
60849113429
-
Sparse canonical methods for biological data integration: Application to a cross-platform study
-
Epub 2009/01/28. PMID: 19171069; PubMed Central PMCID: PMC2640358
-
Le Cao KA, Martin PG, Robert-Granie C, Besse P. Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinformatics. 2009; 10:34. Epub 2009/01/28. doi: 10.1186/1471-2105-10-34 PMID: 19171069; PubMed Central PMCID: PMC2640358.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 34
-
-
Le Cao, K.A.1
Martin, P.G.2
Robert-Granie, C.3
Besse, P.4
-
33
-
-
68249115586
-
Extensions of sparse canonical correlation analysis with applications to genomic data
-
Epub 2009/07/04. PMID: 19572827; PubMed Central PMCID: PMC2861323
-
Witten DM, Tibshirani RJ. Extensions of sparse canonical correlation analysis with applications to genomic data. Statistical applications in genetics and molecular biology. 2009; 8:Article28. Epub 2009/07/04. doi: 10.2202/1544-6115.1470 PMID: 19572827; PubMed Central PMCID: PMC2861323.
-
(2009)
Statistical Applications in Genetics and Molecular Biology
, vol.8
-
-
Witten, D.M.1
Tibshirani, R.J.2
-
34
-
-
0001192187
-
Accurate Singular-Values of Bidiagonal Matrices
-
WOS:A1990DU98400005
-
Demmel J, Kahan W. Accurate Singular-Values of Bidiagonal Matrices. Siam J Sci Stat Comp. 1990; 11(5):873-912. doi: 10.1137/0911052 WOS:A1990DU98400005.
-
(1990)
Siam J Sci Stat Comp
, vol.11
, Issue.5
, pp. 873-912
-
-
Demmel, J.1
Kahan, W.2
-
35
-
-
84878062174
-
Knowledge-based analysis of proteomics data
-
PMID: 23176192
-
Bessarabova M, Ishkin A, JeBailey L, Nikolskaya T, Nikolsky Y. Knowledge-based analysis of proteomics data. BMC Bioinformatics. 2012; 13(Suppl 16):S13 doi: 10.1186/1471-2105-13-S16-S13 PMID: 23176192
-
(2012)
BMC Bioinformatics.
, vol.13
, pp. S13
-
-
Bessarabova, M.1
Ishkin, A.2
JeBailey, L.3
Nikolskaya, T.4
Nikolsky, Y.5
-
36
-
-
77951499762
-
How informatics can potentiate precompetitive open-source collaboration to jump-start drug discovery and development
-
Epub 2010/04/09. clpt201021 [pii] PMID: 20376001
-
Perakslis ED, Van Dam J, Szalma S. How informatics can potentiate precompetitive open-source collaboration to jump-start drug discovery and development. Clin Pharmacol Ther. 2010; 87(5):614-6. Epub 2010/04/09. doi: 10.1038/clpt.2010.21 clpt201021 [pii] PMID: 20376001.
-
(2010)
Clin Pharmacol Ther
, vol.87
, Issue.5
, pp. 614-616
-
-
Perakslis, E.D.1
Van Dam, J.2
Szalma, S.3
-
37
-
-
80052857450
-
Thawing Frozen Robust Multi-array Analysis (fRMA)
-
Epub 2011/09/20. 1471-2105-12-369 [pii] PMID: 21923903; PubMed Central PMCID: PMC3180392
-
McCall MN, Irizarry RA. Thawing Frozen Robust Multi-array Analysis (fRMA). BMC Bioinformatics. 2011; 12:369. Epub 2011/09/20. doi: 10.1186/1471-2105-12-369 1471-2105-12-369 [pii] PMID: 21923903; PubMed Central PMCID: PMC3180392.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 369
-
-
McCall, M.N.1
Irizarry, R.A.2
-
38
-
-
0037126055
-
Integrated classification of lung tumors and cell lines by expression profiling
-
PMID: 12218176; PubMed Central PMCID: PMC129449
-
Virtanen C, Ishikawa Y, Honjoh D, Kimura M, Shimane M, Miyoshi T, et al. Integrated classification of lung tumors and cell lines by expression profiling. Proc Natl Acad Sci U S A. 2002; 99(19):12357-62. doi: 10.1073/pnas.192240599 PMID: 12218176; PubMed Central PMCID: PMC129449.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.19
, pp. 12357-12362
-
-
Virtanen, C.1
Ishikawa, Y.2
Honjoh, D.3
Kimura, M.4
Shimane, M.5
Miyoshi, T.6
-
39
-
-
34249796654
-
Quantitative gene expression assessment identifies appropriate cell line models for individual cervical cancer pathways
-
PMID: 17493265; PubMed Central PMCID: PMC1878486
-
Carlson MW, Iyer VR, Marcotte EM. Quantitative gene expression assessment identifies appropriate cell line models for individual cervical cancer pathways. BMC genomics. 2007; 8:117. doi: 10.1186/1471-2164-8-117 PMID: 17493265; PubMed Central PMCID: PMC1878486.
-
(2007)
BMC Genomics
, vol.8
, pp. 117
-
-
Carlson, M.W.1
Iyer, V.R.2
Marcotte, E.M.3
-
40
-
-
84890663541
-
Comprehensive biomarker analysis and final efficacy results of sorafenib in the BATTLE trial
-
Epub 2013/10/30. 1078-0432.CCR-12-1818 [pii] PMID: 24166906; PubMed Central PMCID: PMC3905243
-
Blumenschein GR Jr., Saintigny P, Liu S, Kim ES, Tsao AS, Herbst RS, et al. Comprehensive biomarker analysis and final efficacy results of sorafenib in the BATTLE trial. Clin Cancer Res. 2013; 19 (24):6967-75. Epub 2013/10/30. doi: 10.1158/1078-0432.CCR-12-1818 1078-0432.CCR-12-1818 [pii] PMID: 24166906; PubMed Central PMCID: PMC3905243.
-
(2013)
Clin Cancer Res
, vol.19
, Issue.24
, pp. 6967-6975
-
-
Blumenschein, G.R.1
Saintigny, P.2
Liu, S.3
Kim, E.S.4
Tsao, A.S.5
Herbst, R.S.6
-
41
-
-
84906549588
-
A community effort to assess and improve drug sensitivity prediction algorithms
-
Epub 2014/06/02. PMID: 24880487
-
Costello JC, Heiser LM, Georgii E, Gonen M, Menden MP, Wang NJ, et al. A community effort to assess and improve drug sensitivity prediction algorithms. Nat Biotechnol. 2014; 32(12):1202-12. Epub 2014/06/02. doi: 10.1038/nbt.2877 PMID: 24880487.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.12
, pp. 1202-1212
-
-
Costello, J.C.1
Heiser, L.M.2
Georgii, E.3
Gonen, M.4
Menden, M.P.5
Wang, N.J.6
-
42
-
-
84861627343
-
Overcoming molecular mechanisms of resistance to first-generation epidermal growth factor receptor tyrosine kinase inhibitors
-
PMID: 22154113
-
Bar J, Onn A. Overcoming molecular mechanisms of resistance to first-generation epidermal growth factor receptor tyrosine kinase inhibitors. Clinical lung cancer. 2012; 13(4):267-79. doi: 10.1016/j.cllc.2011.09.001 PMID: 22154113.
-
(2012)
Clinical Lung Cancer.
, vol.13
, Issue.4
, pp. 267-279
-
-
Bar, J.1
Onn, A.2
-
43
-
-
77956268839
-
Understanding resistance to EGFR inhibitors-impact on future treatment strategies
-
PMID: 20551942; PubMed Central PMCID: PMC2929287
-
Wheeler DL, Dunn EF, Harari PM. Understanding resistance to EGFR inhibitors-impact on future treatment strategies. Nature reviews Clinical oncology. 2010; 7(9):493-507. doi: 10.1038/nrclinonc.2010.97 PMID: 20551942; PubMed Central PMCID: PMC2929287.
-
(2010)
Nature Reviews Clinical Oncology
, vol.7
, Issue.9
, pp. 493-507
-
-
Wheeler, D.L.1
Dunn, E.F.2
Harari, P.M.3
-
44
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Epub 2003/01/23. PMID: 12538238
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003; 19(2):185-93. Epub 2003/01/23. PMID: 12538238.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
45
-
-
77955131271
-
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
-
Epub 2010/08/03. doi: tpj201057 [pii] PMID: 20676067; PubMed Central PMCID: PMC2920074
-
Luo J, Schumacher M, Scherer A, Sanoudou D, Megherbi D, Davison T, et al. A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data. Pharmacogenomics J. 2010; 10(4):278-91. Epub 2010/08/03. doi: tpj201057 [pii] doi: 10.1038/tpj.2010.57 PMID: 20676067; PubMed Central PMCID: PMC2920074.
-
(2010)
Pharmacogenomics J
, vol.10
, Issue.4
, pp. 278-291
-
-
Luo, J.1
Schumacher, M.2
Scherer, A.3
Sanoudou, D.4
Megherbi, D.5
Davison, T.6
-
46
-
-
77749291770
-
Frozen robust multiarray analysis (fRMA)
-
PMID: 20097884; PubMed Central PMCID: PMC2830579
-
McCall MN, Bolstad BM, Irizarry RA. Frozen robust multiarray analysis (fRMA). Biostatistics. 2010; 11 (2):242-53. doi: 10.1093/biostatistics/kxp059 PMID: 20097884; PubMed Central PMCID: PMC2830579.
-
(2010)
Biostatistics
, vol.11
, Issue.2
, pp. 242-253
-
-
McCall, M.N.1
Bolstad, B.M.2
Irizarry, R.A.3
-
47
-
-
33750616028
-
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
-
Epub 2006/10/25. doi: 1471-2105-7-464 [pii] PMID: 17059591; PubMed Central PMCID: PMC1624855
-
Katz S, Irizarry RA, Lin X, Tripputi M, Porter MW. A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database. BMC Bioinformatics. 2006; 7:464. Epub 2006/10/25. doi: 1471-2105-7-464 [pii] doi: 10.1186/1471-2105-7-464 PMID: 17059591; PubMed Central PMCID: PMC1624855.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 464
-
-
Katz, S.1
Irizarry, R.A.2
Lin, X.3
Tripputi, M.4
Porter, M.W.5
-
48
-
-
70349576321
-
Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform
-
WOS:000269615300010. PMID: 19597786
-
Nikolsky Y, Kirillov E, Zuev R, Rakhmatulin E, Nikolskaya T. Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform. Methods Mol Biol. 2009; 563:177-96. doi: 10.1007/978-1-60761-175-2-10 WOS:000269615300010. PMID: 19597786
-
(2009)
Methods Mol Biol
, vol.563
, pp. 177-196
-
-
Nikolsky, Y.1
Kirillov, E.2
Zuev, R.3
Rakhmatulin, E.4
Nikolskaya, T.5
-
49
-
-
77956194472
-
"Topological Significance" Analysis of Gene Expression and Proteomic Profiles from Prostate Cancer Cells Reveals Key Mechanisms of Androgen Response
-
WOS:000278318700010
-
Vellaichamy A, Dezso Z, JeBailey L, Chinnaiyan AM, Sreekumar A, Nesvizhskii AI, et al. "Topological Significance" Analysis of Gene Expression and Proteomic Profiles from Prostate Cancer Cells Reveals Key Mechanisms of Androgen Response. Plos One. 2010; 5(6). doi: ARTN e10936 doi: 10.1371/journal.pone.0010936 WOS:000278318700010.
-
(2010)
Plos One
, vol.5
, Issue.6
-
-
Vellaichamy, A.1
Dezso, Z.2
JeBailey, L.3
Chinnaiyan, A.M.4
Sreekumar, A.5
Nesvizhskii, A.I.6
-
50
-
-
65549138481
-
Identifying disease-specific genes based on their topological significance in protein networks
-
WOS:000266001700001
-
Dezso Z, Nikolsky Y, Nikolskaya T, Miller J, Cherba D, Webb C, et al. Identifying disease-specific genes based on their topological significance in protein networks. Bmc Syst Biol. 2009; 3. doi: Artn 36. doi: 10.1186/1752-0509-3-36 WOS:000266001700001.
-
(2009)
Bmc Syst Biol
, vol.3
-
-
Dezso, Z.1
Nikolsky, Y.2
Nikolskaya, T.3
Miller, J.4
Cherba, D.5
Webb, C.6
|