-
1
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F. and Richmond, T.J. (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature, 389, 251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
2
-
-
33749153628
-
Nucleosome positions predicted through comparative genomics
-
Ioshikhes, I.P., Albert, I., Zanton, S.J. and Pugh, B.F. (2006) Nucleosome positions predicted through comparative genomics. Nat. Genet., 38, 1210-1215.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1210-1215
-
-
Ioshikhes, I.P.1
Albert, I.2
Zanton, S.J.3
Pugh, B.F.4
-
3
-
-
43749099875
-
Nucleosome organization in the drosophila genome
-
Mavrich, T.N., Jiang, C., Ioshikhes, I.P., Li, X., Venters, B.J., Zanton, S.J., Tomsho, L.P., Qi, J., Glaser, R.L., Schuster, S.C. et al. (2008) Nucleosome organization in the Drosophila genome. Nature, 453, 358-362.
-
(2008)
Nature
, vol.453
, pp. 358-362
-
-
Mavrich, T.N.1
Jiang, C.2
Ioshikhes, I.P.3
Li, X.4
Venters, B.J.5
Zanton, S.J.6
Tomsho, L.P.7
Qi, J.8
Glaser, R.L.9
Schuster, S.C.10
-
4
-
-
60349089645
-
Nucleosome positioning and gene regulation: Advances through genomics
-
Jiang, C. and Pugh, B.F. (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat. Rev. Genet., 10, 161-172.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
5
-
-
79961229129
-
Dual role of brg chromatin remodeling factor in sonic hedgehog signaling during neural development
-
Zhan, X., Shi, X., Zhang, Z., Chen, Y. and Wu, J.I. (2011) Dual role of Brg chromatin remodeling factor in Sonic hedgehog signaling during neural development. Proc. Natl. Acad. Sci. U.S.A., 108, 12758-12763.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 12758-12763
-
-
Zhan, X.1
Shi, X.2
Zhang, Z.3
Chen, Y.4
Wu, J.I.5
-
6
-
-
30044445350
-
Brg1 is required for murine neural stem cell maintenance and gliogenesis
-
Matsumoto, S., Banine, F., Struve, J., Xing, R., Adams, C., Liu, Y., Metzger, D., Chambon, P., Rao, M.S. and Sherman, L.S. (2006) Brg1 is required for murine neural stem cell maintenance and gliogenesis. Dev. Biol., 289, 372-383.
-
(2006)
Dev. Biol.
, vol.289
, pp. 372-383
-
-
Matsumoto, S.1
Banine, F.2
Struve, J.3
Xing, R.4
Adams, C.5
Liu, Y.6
Metzger, D.7
Chambon, P.8
Rao, M.S.9
Sherman, L.S.10
-
7
-
-
65249180173
-
An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency
-
Ho, L., Ronan, J.L., Wu, J., Staahl, B.T., Chen, L., Kuo, A., Lessard, J., Nesvizhskii, A.I., Ranish, J. and Crabtree, G.R. (2009) An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency. Proc. Natl. Acad. Sci. U.S.A., 106, 5181-5186.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5181-5186
-
-
Ho, L.1
Ronan, J.L.2
Wu, J.3
Staahl, B.T.4
Chen, L.5
Kuo, A.6
Lessard, J.7
Nesvizhskii, A.I.8
Ranish, J.9
Crabtree, G.R.10
-
8
-
-
0041429637
-
Sequential roles of brg, the ATPase subunit of BAF chromatin remodeling complexes, in thymocyte development
-
Chi, T.H., Wan, M., Lee, P.P., Akashi, K., Metzger, D., Chambon, P., Wilson, C.B. and Crabtree, G.R. (2003) Sequential roles of Brg, the ATPase subunit of BAF chromatin remodeling complexes, in thymocyte development. Immunity, 19, 169-182.
-
(2003)
Immunity
, vol.19
, pp. 169-182
-
-
Chi, T.H.1
Wan, M.2
Lee, P.P.3
Akashi, K.4
Metzger, D.5
Chambon, P.6
Wilson, C.B.7
Crabtree, G.R.8
-
9
-
-
8544270889
-
Baf60c is essential for function of BAF chromatin remodelling complexes in heart development
-
Lickert, H., Takeuchi, J.K., Von Both, I., Walls, J.R., McAuliffe, F., Adamson, S.L., Henkelman, R.M., Wrana, J.L., Rossant, J. and Bruneau, B.G. (2004) Baf60c is essential for function of BAF chromatin remodelling complexes in heart development. Nature, 432, 107-112.
-
(2004)
Nature
, vol.432
, pp. 107-112
-
-
Lickert, H.1
Takeuchi, J.K.2
Von Both, I.3
Walls, J.R.4
McAuliffe, F.5
Adamson, S.L.6
Henkelman, R.M.7
Wrana, J.L.8
Rossant, J.9
Bruneau, B.G.10
-
10
-
-
84879312591
-
Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters
-
Tolstorukov, M.Y., Sansam, C.G., Lu, P., Koellhoffer, E.C., Helming, K.C., Alver, B.H., Tillman, E.J., Evans, J.A., Wilson, B.G., Park, P.J. et al. (2013) Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters. Proc. Natl. Acad. Sci. U.S.A., 110, 10165-10170.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 10165-10170
-
-
Tolstorukov, M.Y.1
Sansam, C.G.2
Lu, P.3
Koellhoffer, E.C.4
Helming, K.C.5
Alver, B.H.6
Tillman, E.J.7
Evans, J.A.8
Wilson, B.G.9
Park, P.J.10
-
11
-
-
77955053118
-
Geminin and brahma act antagonistically to regulate EGFR-ras-MAPK signaling in drosophila
-
Herr, A., McKenzie, L., Suryadinata, R., Sadowski, M., Parsons, L.M., Sarcevic, B. and Richardson, H.E. (2010) Geminin and Brahma act antagonistically to regulate EGFR-Ras-MAPK signaling in Drosophila. Dev. Biol., 344, 36-51.
-
(2010)
Dev. Biol.
, vol.344
, pp. 36-51
-
-
Herr, A.1
McKenzie, L.2
Suryadinata, R.3
Sadowski, M.4
Parsons, L.M.5
Sarcevic, B.6
Richardson, H.E.7
-
12
-
-
33846170060
-
Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control
-
Moshkin, Y.M., Mohrmann, L., van Ijcken, W.F. and Verrijzer, C.P. (2007) Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control. Mol. Cell. Biol., 27, 651-661.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 651-661
-
-
Moshkin, Y.M.1
Mohrmann, L.2
Van Ijcken, W.F.3
Verrijzer, C.P.4
-
13
-
-
79955682293
-
Genome-wide analysis of self-renewal in drosophila neural stem cells by transgenic RNAi
-
Neumuller, R.A., Richter, C., Fischer, A., Novatchkova, M., Neumuller, K.G. and Knoblich, J.A. (2011) Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi. Cell Stem Cell, 8, 580-593.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 580-593
-
-
Neumuller, R.A.1
Richter, C.2
Fischer, A.3
Novatchkova, M.4
Neumuller, K.G.5
Knoblich, J.A.6
-
14
-
-
84885897697
-
Brahma is essential for drosophila intestinal stem cell proliferation and regulated by hippo signaling
-
Jin, Y., Xu, J., Yin, M.X., Lu, Y., Hu, L., Li, P., Zhang, P., Yuan, Z., Ho, M.S., Ji, H. et al. (2013) Brahma is essential for Drosophila intestinal stem cell proliferation and regulated by Hippo signaling. eLife, 2, e00999.
-
(2013)
ELife
, vol.2
-
-
Jin, Y.1
Xu, J.2
Yin, M.X.3
Lu, Y.4
Hu, L.5
Li, P.6
Zhang, P.7
Yuan, Z.8
Ho, M.S.9
Ji, H.10
-
15
-
-
0034671765
-
Osa-containing brahma chromatin remodeling complexes are required for the repression of wingless target genes
-
Collins, R.T. and Treisman, J.E. (2000) Osa-containing Brahma chromatin remodeling complexes are required for the repression of wingless target genes. Genes Dev., 14, 3140-3152.
-
(2000)
Genes Dev.
, vol.14
, pp. 3140-3152
-
-
Collins, R.T.1
Treisman, J.E.2
-
16
-
-
67349094975
-
Osa, a subunit of the BAP chromatin-remodelling complex, participates in the regulation of gene expression in response to EGFR signalling in the drosophila wing
-
Terriente-Felix, A. and de Celis, J.F. (2009) Osa, a subunit of the BAP chromatin-remodelling complex, participates in the regulation of gene expression in response to EGFR signalling in the Drosophila wing. Dev. Biol., 329, 350-361.
-
(2009)
Dev. Biol.
, vol.329
, pp. 350-361
-
-
Terriente-Felix, A.1
De Celis, J.F.2
-
17
-
-
2442423999
-
Osa modulates the expression of apterous target genes in the drosophila wing
-
Milan, M., Pham, T.T. and Cohen, S.M. (2004) Osa modulates the expression of Apterous target genes in the Drosophila wing. Mech. Dev., 121, 491-497.
-
(2004)
Mech. Dev.
, vol.121
, pp. 491-497
-
-
Milan, M.1
Pham, T.T.2
Cohen, S.M.3
-
18
-
-
50249122170
-
Two subunits specific to the PBAP chromatin remodeling complex have distinct and redundant functions during drosophila development
-
Carrera, I., Zavadil, J. and Treisman, J.E. (2008) Two subunits specific to the PBAP chromatin remodeling complex have distinct and redundant functions during drosophila development. Mol. Cell. Biol., 28, 5238-5250.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 5238-5250
-
-
Carrera, I.1
Zavadil, J.2
Treisman, J.E.3
-
19
-
-
1542267407
-
The drosophila brahma (SWI/SNF) chromatin remodeling complex exhibits cell-type specific activation and repression functions
-
Marenda, D.R., Zraly, C.B. and Dingwall, A.K. (2004) The Drosophila Brahma (SWI/SNF) chromatin remodeling complex exhibits cell-type specific activation and repression functions. Dev. Biol., 267, 279-293.
-
(2004)
Dev. Biol.
, vol.267
, pp. 279-293
-
-
Marenda, D.R.1
Zraly, C.B.2
Dingwall, A.K.3
-
20
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method
-
Livak, K.J. and Schmittgen, T.D. (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 25, 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
21
-
-
77957725025
-
Fine mapping of chromatin structure in drosophila melanogaster embryos using micrococcal nuclease
-
Li, L.M. and Arnosti, D.N. (2010) Fine mapping of chromatin structure in Drosophila melanogaster embryos using micrococcal nuclease. Fly, 4, 213-215.
-
(2010)
Fly
, vol.4
, pp. 213-215
-
-
Li, L.M.1
Arnosti, D.N.2
-
22
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the saccharomyces cerevisiae genome
-
Albert, I., Mavrich, T.N., Tomsho, L.P., Qi, J., Zanton, S.J., Schuster, S.C. and Pugh, B.F. (2007) Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature, 446, 572-576.
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
Mavrich, T.N.2
Tomsho, L.P.3
Qi, J.4
Zanton, S.J.5
Schuster, S.C.6
Pugh, B.F.7
-
23
-
-
43349089437
-
GeneTrack - A genomic data processing and visualization framework
-
Albert, I., Wachi, S., Jiang, C. and Pugh, B.F. (2008) GeneTrack-a genomic data processing and visualization framework. Bioinformatics, 24, 1305-1306.
-
(2008)
Bioinformatics
, vol.24
, pp. 1305-1306
-
-
Albert, I.1
Wachi, S.2
Jiang, C.3
Pugh, B.F.4
-
24
-
-
79956316470
-
A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
-
Zhang, Z., Wippo, C.J., Wal, M., Ward, E., Korber, P. and Pugh, B.F. (2011) A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science, 332, 977-980.
-
(2011)
Science
, vol.332
, pp. 977-980
-
-
Zhang, Z.1
Wippo, C.J.2
Wal, M.3
Ward, E.4
Korber, P.5
Pugh, B.F.6
-
25
-
-
37249077649
-
Chromatin remodelling at promoters suppresses antisense transcription
-
Whitehouse, I., Rando, O.J., Delrow, J. and Tsukiyama, T. (2007) Chromatin remodelling at promoters suppresses antisense transcription. Nature, 450, 1031-1035.
-
(2007)
Nature
, vol.450
, pp. 1031-1035
-
-
Whitehouse, I.1
Rando, O.J.2
Delrow, J.3
Tsukiyama, T.4
-
26
-
-
0028338677
-
Genetic analysis of the brahma gene of drosophila melanogaster and polytene chromosome subdivisions 72AB
-
Brizuela, B.J., Elfring, L., Ballard, J., Tamkun, J.W. and Kennison, J.A. (1994) Genetic analysis of the brahma gene of Drosophila melanogaster and polytene chromosome subdivisions 72AB. Genetics, 137, 803-813.
-
(1994)
Genetics
, vol.137
, pp. 803-813
-
-
Brizuela, B.J.1
Elfring, L.2
Ballard, J.3
Tamkun, J.W.4
Kennison, J.A.5
-
27
-
-
0026580006
-
Brahma: A regulator of drosophila homeotic genes structurally related to the Yeast transcriptional activator SNF2/SWI2
-
Tamkun, J.W., Deuring, R., Scott, M.P., Kissinger, M., Pattatucci, A.M., Kaufman, T.C. and Kennison, J.A. (1992) brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell, 68, 561-572.
-
(1992)
Cell
, vol.68
, pp. 561-572
-
-
Tamkun, J.W.1
Deuring, R.2
Scott, M.P.3
Kissinger, M.4
Pattatucci, A.M.5
Kaufman, T.C.6
Kennison, J.A.7
-
28
-
-
33845935522
-
Hormone-response genes are direct in vivo regulatory targets of brahma (SWI/SNF) complex function
-
Zraly, C.B., Middleton, F.A. and Dingwall, A.K. (2006) Hormone-response genes are direct in vivo regulatory targets of Brahma (SWI/SNF) complex function. J. Biol. Chem., 281, 35305-35315.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 35305-35315
-
-
Zraly, C.B.1
Middleton, F.A.2
Dingwall, A.K.3
-
29
-
-
34948872721
-
How many remodelers does it take to make a brain? Diverse and cooperative roles of ATP-dependent chromatin-remodeling complexes in development
-
Brown, E., Malakar, S. and Krebs, J.E. (2007) How many remodelers does it take to make a brain? Diverse and cooperative roles of ATP-dependent chromatin-remodeling complexes in development. Biochem. Cell Biol., 85, 444-462.
-
(2007)
Biochem. Cell Biol.
, vol.85
, pp. 444-462
-
-
Brown, E.1
Malakar, S.2
Krebs, J.E.3
-
30
-
-
84856806926
-
Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner
-
Moshkin, Y.M., Chalkley, G.E., Kan, T.W., Reddy, B.A., Ozgur, Z., van Ijcken, W.F., Dekkers, D.H., Demmers, J.A., Travers, A.A. and Verrijzer, C.P. (2012) Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner. Mol. Cell. Biol., 32, 675-688.
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 675-688
-
-
Moshkin, Y.M.1
Chalkley, G.E.2
Kan, T.W.3
Reddy, B.A.4
Ozgur, Z.5
Van Ijcken, W.F.6
Dekkers, D.H.7
Demmers, J.A.8
Travers, A.A.9
Verrijzer, C.P.10
-
31
-
-
80053140931
-
A role for snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization
-
Gkikopoulos, T., Schofield, P., Singh, V., Pinskaya, M., Mellor, J., Smolle, M., Workman, J.L., Barton, G.J. and Owen-Hughes, T. (2011) A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization. Science, 333, 1758-1760.
-
(2011)
Science
, vol.333
, pp. 1758-1760
-
-
Gkikopoulos, T.1
Schofield, P.2
Singh, V.3
Pinskaya, M.4
Mellor, J.5
Smolle, M.6
Workman, J.L.7
Barton, G.J.8
Owen-Hughes, T.9
-
32
-
-
46449112319
-
A Barrier nucleosome model for statistical positioning of nucleosomes throughout the Yeast genome
-
Mavrich, T.N., Ioshikhes, I.P., Venters, B.J., Jiang, C., Tomsho, L.P., Qi, J., Schuster, S.C., Albert, I. and Pugh, B.F. (2008) A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res., 18, 1073-1083.
-
(2008)
Genome Res.
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.N.1
Ioshikhes, I.P.2
Venters, B.J.3
Jiang, C.4
Tomsho, L.P.5
Qi, J.6
Schuster, S.C.7
Albert, I.8
Pugh, B.F.9
-
33
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones, D.E., Cui, K., Cuddapah, S., Roh, T.Y., Barski, A., Wang, Z., Wei, G. and Zhao, K. (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell, 132, 887-898.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
34
-
-
80052022462
-
Cistrome: An integrative platform for transcriptional regulation studies
-
Liu, T., Ortiz, J.A., Taing, L., Meyer, C.A., Lee, B., Zhang, Y., Shin, H., Wong, S.S., Ma, J., Lei, Y. et al. (2011) Cistrome: an integrative platform for transcriptional regulation studies. Genome Biol., 12, R83.
-
(2011)
Genome Biol.
, vol.12
, pp. R83
-
-
Liu, T.1
Ortiz, J.A.2
Taing, L.3
Meyer, C.A.4
Lee, B.5
Zhang, Y.6
Shin, H.7
Wong, S.S.8
Ma, J.9
Lei, Y.10
-
35
-
-
0034999881
-
Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites
-
Anderson, J.D. and Widom, J. (2001) Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites. Mol. Cell. Biol., 21, 3830-3839.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 3830-3839
-
-
Anderson, J.D.1
Widom, J.2
-
36
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. Cerevisiae
-
Yuan, G.C., Liu, Y.J., Dion, M.F., Slack, M.D., Wu, L.F., Altschuler, S.J. and Rando, O.J. (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science, 309, 626-630.
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.C.1
Liu, Y.J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
-
37
-
-
0034721670
-
The isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p
-
Goldmark, J.P., Fazzio, T.G., Estep, P.W., Church, G.M. and Tsukiyama, T. (2000) The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell, 103, 423-433.
-
(2000)
Cell
, vol.103
, pp. 423-433
-
-
Goldmark, J.P.1
Fazzio, T.G.2
Estep, P.W.3
Church, G.M.4
Tsukiyama, T.5
-
38
-
-
84869089058
-
Genome-wide nucleosome positioning during embryonic stem cell development
-
Teif, V.B., Vainshtein, Y., Caudron-Herger, M., Mallm, J.P., Marth, C., Hofer, T. and Rippe, K. (2012) Genome-wide nucleosome positioning during embryonic stem cell development. Nat. Struct. Mol. Biol., 19, 1185-1192.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1185-1192
-
-
Teif, V.B.1
Vainshtein, Y.2
Caudron-Herger, M.3
Mallm, J.P.4
Marth, C.5
Hofer, T.6
Rippe, K.7
-
39
-
-
0036274359
-
The fundamental role of epigenetic events in cancer
-
Jones, P.A. and Baylin, S.B. (2002) The fundamental role of epigenetic events in cancer. Nat. Rev. Genet., 3, 415-428.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 415-428
-
-
Jones, P.A.1
Baylin, S.B.2
|