메뉴 건너뛰기




Volumn 427, Issue 11, 2015, Pages 2072-2087

Genome-wide localization study of yeast pex11 identifies peroxisome-mitochondria interactions through the ERMES complex

Author keywords

computational image analysis; high content microscopy; lipid metabolism; organelle juxtaposition; peroxisomal disorders

Indexed keywords

GREEN FLUORESCENT PROTEIN; MDM10 PROTEIN, S CEREVISIAE; MDM12 PROTEIN, S CEREVISIAE; MDM34 PROTEIN, S CEREVISIAE; MEMBRANE PROTEIN; MITOCHONDRIAL PROTEIN; MMM1 PROTEIN, S CEREVISIAE; MULTIPROTEIN COMPLEX; PEX11 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84938737846     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2015.03.004     Document Type: Article
Times cited : (120)

References (59)
  • 2
    • 84895192712 scopus 로고    scopus 로고
    • Metabolic functions of peroxisomes in health and disease
    • R.J. Wanders Metabolic functions of peroxisomes in health and disease Biochimie 98 2014 36 44
    • (2014) Biochimie , vol.98 , pp. 36-44
    • Wanders, R.J.1
  • 3
    • 0029994543 scopus 로고    scopus 로고
    • Role of the peroxisome proliferator-activated receptor (PPAR) in mediating the effects of fibrates and fatty acids on gene expression
    • K. Schoonjans, B. Staels, and J. Auwerx Role of the peroxisome proliferator-activated receptor (PPAR) in mediating the effects of fibrates and fatty acids on gene expression J Lipid Res 37 1996 907 925
    • (1996) J Lipid Res , vol.37 , pp. 907-925
    • Schoonjans, K.1    Staels, B.2    Auwerx, J.3
  • 4
    • 0042858605 scopus 로고    scopus 로고
    • Futile cycling of intermediates of fatty acid biosynthesis toward peroxisomal beta-oxidation in Saccharomyces cerevisiae
    • S. Marchesini, and Y. Poirier Futile cycling of intermediates of fatty acid biosynthesis toward peroxisomal beta-oxidation in Saccharomyces cerevisiae J Biol Chem 278 2003 32596 32601
    • (2003) J Biol Chem , vol.278 , pp. 32596-32601
    • Marchesini, S.1    Poirier, Y.2
  • 6
    • 0028859252 scopus 로고
    • Giant peroxisomes in oleic acid-induced Saccharomyces cerevisiae lacking the peroxisomal membrane protein Pmp27p
    • R. Erdmann, and G. Blobel Giant peroxisomes in oleic acid-induced Saccharomyces cerevisiae lacking the peroxisomal membrane protein Pmp27p J Cell Biol 128 1995 509 523
    • (1995) J Cell Biol , vol.128 , pp. 509-523
    • Erdmann, R.1    Blobel, G.2
  • 9
    • 77955986557 scopus 로고    scopus 로고
    • PEX11 family members are membrane elongation factors that coordinate peroxisome proliferation and maintenance
    • J. Koch, K. Pranjic, A. Huber, A. Ellinger, A. Hartig, and F. Kragler PEX11 family members are membrane elongation factors that coordinate peroxisome proliferation and maintenance J Cell Sci 123 2010 3389 3400
    • (2010) J Cell Sci , vol.123 , pp. 3389-3400
    • Koch, J.1    Pranjic, K.2    Huber, A.3    Ellinger, A.4    Hartig, A.5    Kragler, F.6
  • 10
    • 0037930873 scopus 로고    scopus 로고
    • The dynamin-like GTPase DLP1 is essential for peroxisome division and is recruited to peroxisomes in part by PEX11
    • X. Li, and S.J. Gould The dynamin-like GTPase DLP1 is essential for peroxisome division and is recruited to peroxisomes in part by PEX11 J Biol Chem 278 2003 17012 17020
    • (2003) J Biol Chem , vol.278 , pp. 17012-17020
    • Li, X.1    Gould, S.J.2
  • 11
    • 0034192231 scopus 로고    scopus 로고
    • Nuclear receptors arose from pre-existing protein modules during evolution
    • P. Barnett, H.F. Tabak, and E.H. Hettema Nuclear receptors arose from pre-existing protein modules during evolution Trends Biochem Sci 25 2000 227 228
    • (2000) Trends Biochem Sci , vol.25 , pp. 227-228
    • Barnett, P.1    Tabak, H.F.2    Hettema, E.H.3
  • 12
    • 84855907985 scopus 로고    scopus 로고
    • Deletion of a single allele of the Pex11beta gene is sufficient to cause oxidative stress, delayed differentiation and neuronal death in mouse brain
    • B. Ahlemeyer, M. Gottwald, and E. Baumgart-Vogt Deletion of a single allele of the Pex11beta gene is sufficient to cause oxidative stress, delayed differentiation and neuronal death in mouse brain Dis Model Mech 5 2012 125 140
    • (2012) Dis Model Mech , vol.5 , pp. 125-140
    • Ahlemeyer, B.1    Gottwald, M.2    Baumgart-Vogt, E.3
  • 13
    • 0036261777 scopus 로고    scopus 로고
    • PEX11 beta deficiency is lethal and impairs neuronal migration but does not abrogate peroxisome function
    • X. Li, E. Baumgart, J.C. Morrell, G. Jimenez-Sanchez, D. Valle, and S.J. Gould PEX11 beta deficiency is lethal and impairs neuronal migration but does not abrogate peroxisome function Mol Cell Biol 22 2002 4358 4365
    • (2002) Mol Cell Biol , vol.22 , pp. 4358-4365
    • Li, X.1    Baumgart, E.2    Morrell, J.C.3    Jimenez-Sanchez, G.4    Valle, D.5    Gould, S.J.6
  • 14
    • 84864105217 scopus 로고    scopus 로고
    • First PEX11beta patient extends spectrum of peroxisomal biogenesis disorder phenotypes
    • S. Thoms, and J. Gartner First PEX11beta patient extends spectrum of peroxisomal biogenesis disorder phenotypes J Med Genet 49 2012 314 316
    • (2012) J Med Genet , vol.49 , pp. 314-316
    • Thoms, S.1    Gartner, J.2
  • 15
    • 84867336378 scopus 로고    scopus 로고
    • PEX11 proteins attract Mff and human Fis1 to coordinate peroxisomal fission
    • J. Koch, and C. Brocard PEX11 proteins attract Mff and human Fis1 to coordinate peroxisomal fission J Cell Sci 125 2012 3813 3826
    • (2012) J Cell Sci , vol.125 , pp. 3813-3826
    • Koch, J.1    Brocard, C.2
  • 16
    • 60849129470 scopus 로고    scopus 로고
    • Imaging-based live cell yeast screen identifies novel factors involved in peroxisome assembly
    • H. Wolinski, U. Petrovič, M. Mattiazzi, J. Petschnigg, B. Heise, and K. Natter Imaging-based live cell yeast screen identifies novel factors involved in peroxisome assembly J Proteome Res 8 2009 20 27
    • (2009) J Proteome Res , vol.8 , pp. 20-27
    • Wolinski, H.1    Petrovič, U.2    Mattiazzi, M.3    Petschnigg, J.4    Heise, B.5    Natter, K.6
  • 17
    • 0141541655 scopus 로고    scopus 로고
    • Conserved function of pex11p and the novel pex25p and pex27p in peroxisome biogenesis
    • H. Rottensteiner, K. Stein, E. Sonnenhol, and R. Erdmann Conserved function of pex11p and the novel pex25p and pex27p in peroxisome biogenesis Mol Biol Cell 14 2003 4316 4328
    • (2003) Mol Biol Cell , vol.14 , pp. 4316-4328
    • Rottensteiner, H.1    Stein, K.2    Sonnenhol, E.3    Erdmann, R.4
  • 18
    • 0141764783 scopus 로고    scopus 로고
    • Pex11-related proteins in peroxisome dynamics: A role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae
    • Y.Y. Tam, J.C. Torres-Guzman, F.J. Vizeacoumar, J.J. Smith, M. Marelli, and J.D. Aitchison Pex11-related proteins in peroxisome dynamics: a role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae Mol Biol Cell 14 2003 4089 4102
    • (2003) Mol Biol Cell , vol.14 , pp. 4089-4102
    • Tam, Y.Y.1    Torres-Guzman, J.C.2    Vizeacoumar, F.J.3    Smith, J.J.4    Marelli, M.5    Aitchison, J.D.6
  • 19
    • 0037297590 scopus 로고    scopus 로고
    • Short-chain fatty acid activation by acyl-coenzyme A synthetases requires SIR2 protein function in Salmonella enterica and Saccharomyces cerevisiae
    • V.J. Starai, H. Takahashi, J.D. Boeke, and J.C. Escalante-Semerena Short-chain fatty acid activation by acyl-coenzyme A synthetases requires SIR2 protein function in Salmonella enterica and Saccharomyces cerevisiae Genetics 163 2003 545 555
    • (2003) Genetics , vol.163 , pp. 545-555
    • Starai, V.J.1    Takahashi, H.2    Boeke, J.D.3    Escalante-Semerena, J.C.4
  • 20
    • 75149194039 scopus 로고    scopus 로고
    • PPAR control: It's SIRTainly as easy as PGC
    • M.C. Sugden, P.W. Caton, and M.J. Holness PPAR control: it's SIRTainly as easy as PGC J Endocrinol 204 2010 93 104
    • (2010) J Endocrinol , vol.204 , pp. 93-104
    • Sugden, M.C.1    Caton, P.W.2    Holness, M.J.3
  • 21
    • 0034677197 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae pex3p and pex19p are required for proper localization and stability of peroxisomal membrane proteins
    • E.H. Hettema, W. Girzalsky, M. van Den Berg, R. Erdmann, and B. Distel Saccharomyces cerevisiae pex3p and pex19p are required for proper localization and stability of peroxisomal membrane proteins EMBO J 19 2000 223 233
    • (2000) EMBO J , vol.19 , pp. 223-233
    • Hettema, E.H.1    Girzalsky, W.2    Van Den Berg, M.3    Erdmann, R.4    Distel, B.5
  • 23
    • 0026080044 scopus 로고
    • PAS3, a Saccharomyces cerevisiae gene encoding a peroxisomal integral membrane protein essential for peroxisome biogenesis
    • J. Hohfeld, M. Veenhuis, and W.H. Kunau PAS3, a Saccharomyces cerevisiae gene encoding a peroxisomal integral membrane protein essential for peroxisome biogenesis J Cell Biol 114 1991 1167 1178
    • (1991) J Cell Biol , vol.114 , pp. 1167-1178
    • Hohfeld, J.1    Veenhuis, M.2    Kunau, W.H.3
  • 27
    • 77956081621 scopus 로고    scopus 로고
    • Molecular mechanisms of organelle inheritance: Lessons from peroxisomes in yeast
    • A. Fagarasanu, F.D. Mast, B. Knoblach, and R.A. Rachubinski Molecular mechanisms of organelle inheritance: lessons from peroxisomes in yeast Nat Rev Mol Cell Biol 11 2010 644 654
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 644-654
    • Fagarasanu, A.1    Mast, F.D.2    Knoblach, B.3    Rachubinski, R.A.4
  • 29
    • 0032574840 scopus 로고    scopus 로고
    • A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo
    • I. Stagljar, C. Korostensky, N. Johnsson, and S. te Heesen A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo Proc Natl Acad Sci USA 95 1998 5187 5192
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 5187-5192
    • Stagljar, I.1    Korostensky, C.2    Johnsson, N.3    Te Heesen, S.4
  • 30
    • 34147167177 scopus 로고    scopus 로고
    • Mapping protein-protein interactions for the yeast ABC transporter Ycf1p by integrated split-ubiquitin membrane yeast two-hybrid analysis
    • C.M. Paumi, J. Menendez, A. Arnoldo, K. Engels, K.R. Iyer, and S. Thaminy Mapping protein-protein interactions for the yeast ABC transporter Ycf1p by integrated split-ubiquitin membrane yeast two-hybrid analysis Mol Cell 26 2007 15 25
    • (2007) Mol Cell , vol.26 , pp. 15-25
    • Paumi, C.M.1    Menendez, J.2    Arnoldo, A.3    Engels, K.4    Iyer, K.R.5    Thaminy, S.6
  • 31
    • 77954249974 scopus 로고    scopus 로고
    • Detecting interactions with membrane proteins using a membrane two-hybrid assay in yeast
    • J. Snider, S. Kittanakom, D. Damjanovic, J. Curak, V. Wong, and I. Stagljar Detecting interactions with membrane proteins using a membrane two-hybrid assay in yeast Nat Protoc 5 2010 1281 1293
    • (2010) Nat Protoc , vol.5 , pp. 1281-1293
    • Snider, J.1    Kittanakom, S.2    Damjanovic, D.3    Curak, J.4    Wong, V.5    Stagljar, I.6
  • 33
    • 0029792856 scopus 로고    scopus 로고
    • Redox-sensitive homodimerization of Pex11p: A proposed mechanism to regulate peroxisomal division
    • P.A. Marshall, J.M. Dyer, M.E. Quick, and J.M. Goodman Redox-sensitive homodimerization of Pex11p: a proposed mechanism to regulate peroxisomal division J Cell Biol 135 1996 123 137
    • (1996) J Cell Biol , vol.135 , pp. 123-137
    • Marshall, P.A.1    Dyer, J.M.2    Quick, M.E.3    Goodman, J.M.4
  • 34
    • 34548680957 scopus 로고    scopus 로고
    • Bimolecular fluorescence complementation analysis system for in vivo detection of protein-protein interaction in Saccharomyces cerevisiae
    • M.K. Sung, and W.K. Huh Bimolecular fluorescence complementation analysis system for in vivo detection of protein-protein interaction in Saccharomyces cerevisiae Yeast 24 2007 767 775
    • (2007) Yeast , vol.24 , pp. 767-775
    • Sung, M.K.1    Huh, W.K.2
  • 35
    • 0041827355 scopus 로고    scopus 로고
    • Pex10p links the ubiquitin conjugating enzyme Pex4p to the protein import machinery of the peroxisome
    • J.H. Eckert, and N. Johnsson Pex10p links the ubiquitin conjugating enzyme Pex4p to the protein import machinery of the peroxisome J Cell Sci 116 2003 3623 3634
    • (2003) J Cell Sci , vol.116 , pp. 3623-3634
    • Eckert, J.H.1    Johnsson, N.2
  • 37
    • 80052172908 scopus 로고    scopus 로고
    • The conserved GTPase Gem1 regulates endoplasmic reticulum-mitochondria connections
    • B. Kornmann, C. Osman, and P. Walter The conserved GTPase Gem1 regulates endoplasmic reticulum-mitochondria connections Proc Natl Acad Sci USA 108 2011 14151 14156
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 14151-14156
    • Kornmann, B.1    Osman, C.2    Walter, P.3
  • 38
    • 0034617992 scopus 로고    scopus 로고
    • Pex11p plays a primary role in medium-chain fatty acid oxidation, a process that affects peroxisome number and size in Saccharomyces cerevisiae
    • C.W. van Roermund, H.F. Tabak, M. van Den Berg, R.J. Wanders, and E.H. Hettema Pex11p plays a primary role in medium-chain fatty acid oxidation, a process that affects peroxisome number and size in Saccharomyces cerevisiae J Cell Biol 150 2000 489 498
    • (2000) J Cell Biol , vol.150 , pp. 489-498
    • Van Roermund, C.W.1    Tabak, H.F.2    Van Den Berg, M.3    Wanders, R.J.4    Hettema, E.H.5
  • 39
    • 84906937036 scopus 로고    scopus 로고
    • Making connections: Interorganelle contacts orchestrate mitochondrial behavior
    • T. Klecker, S. Bockler, and B. Westermann Making connections: interorganelle contacts orchestrate mitochondrial behavior Trends Cell Biol 24 2014 537 545
    • (2014) Trends Cell Biol , vol.24 , pp. 537-545
    • Klecker, T.1    Bockler, S.2    Westermann, B.3
  • 40
    • 84898400392 scopus 로고    scopus 로고
    • The progression of peroxisomal degradation through autophagy requires peroxisomal division
    • K. Mao, X. Liu, Y. Feng, and D.J. Klionsky The progression of peroxisomal degradation through autophagy requires peroxisomal division Autophagy 10 2014 652 661
    • (2014) Autophagy , vol.10 , pp. 652-661
    • Mao, K.1    Liu, X.2    Feng, Y.3    Klionsky, D.J.4
  • 43
    • 0033529707 scopus 로고    scopus 로고
    • Functional characterization of the S. Cerevisiae genome by gene deletion and parallel analysis
    • E.A. Winzeler, D.D. Shoemaker, A. Astromoff, H. Liang, K. Anderson, and B. Andre Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis Science 285 1999 901 906
    • (1999) Science , vol.285 , pp. 901-906
    • Winzeler, E.A.1    Shoemaker, D.D.2    Astromoff, A.3    Liang, H.4    Anderson, K.5    Andre, B.6
  • 44
    • 79953845487 scopus 로고    scopus 로고
    • Systematic exploration of essential yeast gene function with temperature-sensitive mutants
    • Z. Li, F.J. Vizeacoumar, S. Bahr, J. Li, J. Warringer, and F.S. Vizeacoumar Systematic exploration of essential yeast gene function with temperature-sensitive mutants Nat Biotechnol 29 2011 361 367
    • (2011) Nat Biotechnol , vol.29 , pp. 361-367
    • Li, Z.1    Vizeacoumar, F.J.2    Bahr, S.3    Li, J.4    Warringer, J.5    Vizeacoumar, F.S.6
  • 45
    • 77957886997 scopus 로고    scopus 로고
    • In vivo quantification of protein-protein interactions in Saccharomyces cerevisiae using bimolecular fluorescence complementation assay
    • M.K. Sung, and W.K. Huh In vivo quantification of protein-protein interactions in Saccharomyces cerevisiae using bimolecular fluorescence complementation assay J Microbiol Methods 83 2010 194 201
    • (2010) J Microbiol Methods , vol.83 , pp. 194-201
    • Sung, M.K.1    Huh, W.K.2
  • 47
    • 4444271170 scopus 로고    scopus 로고
    • A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
    • C. Janke, M.M. Magiera, N. Rathfelder, C. Taxis, S. Reber, and H. Maekawa A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes Yeast 21 2004 947 962
    • (2004) Yeast , vol.21 , pp. 947-962
    • Janke, C.1    Magiera, M.M.2    Rathfelder, N.3    Taxis, C.4    Reber, S.5    Maekawa, H.6
  • 48
    • 0035861532 scopus 로고    scopus 로고
    • Systematic genetic analysis with ordered arrays of yeast deletion mutants
    • A.H. Tong, M. Evangelista, A.B. Parsons, H. Xu, G.D. Bader, and N. Page Systematic genetic analysis with ordered arrays of yeast deletion mutants Science 294 2001 2364 2368
    • (2001) Science , vol.294 , pp. 2364-2368
    • Tong, A.H.1    Evangelista, M.2    Parsons, A.B.3    Xu, H.4    Bader, G.D.5    Page, N.6
  • 49
    • 0000422658 scopus 로고
    • Yeast recombination: The association between double-strand gap repair and crossing-over
    • T.L. Orr-Weaver, and J.W. Szostak Yeast recombination: the association between double-strand gap repair and crossing-over Proc Natl Acad Sci USA 80 1983 4417 4421
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 4417-4421
    • Orr-Weaver, T.L.1    Szostak, J.W.2
  • 50
    • 0034680759 scopus 로고    scopus 로고
    • A novel strategy for constructing N-terminal chromosomal fusions to green fluorescent protein in the yeast Saccharomyces cerevisiae
    • B. Prein, K. Natter, and S.D. Kohlwein A novel strategy for constructing N-terminal chromosomal fusions to green fluorescent protein in the yeast Saccharomyces cerevisiae FEBS Lett 485 2000 29 34
    • (2000) FEBS Lett , vol.485 , pp. 29-34
    • Prein, B.1    Natter, K.2    Kohlwein, S.D.3
  • 51
    • 3042722112 scopus 로고    scopus 로고
    • Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae
    • M.A. Sheff, and K.S. Thorn Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae Yeast 21 2004 661 670
    • (2004) Yeast , vol.21 , pp. 661-670
    • Sheff, M.A.1    Thorn, K.S.2
  • 54
  • 56
    • 58149308056 scopus 로고    scopus 로고
    • Cdk1/Cdc28-dependent activation of the major triacylglycerol lipase Tgl4 in yeast links lipolysis to cell-cycle progression
    • C.F. Kurat, H. Wolinski, J. Petschnigg, S. Kaluarachchi, B. Andrews, and K. Natter Cdk1/Cdc28-dependent activation of the major triacylglycerol lipase Tgl4 in yeast links lipolysis to cell-cycle progression Mol Cell 33 2009 53 63
    • (2009) Mol Cell , vol.33 , pp. 53-63
    • Kurat, C.F.1    Wolinski, H.2    Petschnigg, J.3    Kaluarachchi, S.4    Andrews, B.5    Natter, K.6
  • 57
    • 70549086797 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
    • M.A. Teste, M. Duquenne, J.M. Francois, and J.L. Parrou Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae BMC Mol Biol 10 2009 99
    • (2009) BMC Mol Biol , vol.10 , pp. 99
    • Teste, M.A.1    Duquenne, M.2    Francois, J.M.3    Parrou, J.L.4
  • 58
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • J. Hellemans, G. Mortier, A. De Paepe, F. Speleman, and J. Vandesompele qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data Genome Biol 8 2007 R19
    • (2007) Genome Biol , vol.8 , pp. R19
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5
  • 59
    • 0002819495 scopus 로고
    • Highly efficient transformation with lithium acetate
    • J.R. Johnston, Oxford University Press Oxford, UK
    • R.D. Gietz, and R.A. Woods Highly efficient transformation with lithium acetate J.R. Johnston, Molecular genetics of yeast: a practical approach 1994 Oxford University Press Oxford, UK 121 134
    • (1994) Molecular Genetics of Yeast: A Practical Approach , pp. 121-134
    • Gietz, R.D.1    Woods, R.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.