-
1
-
-
0033569743
-
A doughnut-shaped heteromer of human Smlike proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
-
Achsel T, Brahms H, Kastner B, Bachi A, Wilm M, Lu¨ hrmann R. 1999. A doughnut-shaped heteromer of human Smlike proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. The EMBO Journal 18:5789–5802. doi: 10.1093/emboj/18.20.5789.
-
(1999)
The EMBO Journal
, vol.18
, pp. 5789-5802
-
-
Achsel, T.1
Brahms, H.2
Kastner, B.3
Bachi, A.4
Wilm, M.5
Hrmann, L.6
-
2
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.Refine. Acta Crystallographica. Section D
-
Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD. 2012. Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallographica. Section D, Biological Crystallography 68:352–367. doi: 10.1107/S0907444912001308.
-
(2012)
Biological Crystallography
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
Terwilliger, T.C.7
Urzhumtsev, A.8
Zwart, P.H.9
Adams, P.D.10
-
3
-
-
0030801280
-
The yeast Prp3 protein is a U4/U6 snRNP protein necessary for integrity of the U4/U6 snRNP and the U4/U6.U5 tri-snRNP
-
Anthony JG, Weidenhammer EM, Woolford JL Jr. 1997. The yeast Prp3 protein is a U4/U6 snRNP protein necessary for integrity of the U4/U6 snRNP and the U4/U6.U5 tri-snRNP. RNA 3:1143–1152.
-
(1997)
RNA
, vol.3
, pp. 1143-1152
-
-
Anthony, J.G.1
Weidenhammer, E.M.2
Woolford, J.L.3
-
4
-
-
0032484029
-
Functional and structural characterization of the prp3 binding domain of the yeast prp4 splicing factor
-
Ayadi L, Callebaut I, Saguez C, Villa T, Mornon JP, Banroques J. 1998. Functional and structural characterization of the prp3 binding domain of the yeast prp4 splicing factor. Journal of Molecular Biology 284:673–687. doi: 10.1006/jmbi.1998.2183.
-
(1998)
Journal of Molecular Biology
, vol.284
, pp. 673-687
-
-
Ayadi, L.1
Callebaut, I.2
Saguez, C.3
Villa, T.4
Mornon, J.P.5
Banroques, J.6
-
5
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M. 2012. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Molecular Cell 46:674–690. doi: 10.1016/j.molcel.2012.05.021.
-
(2012)
Molecular Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
Munschauer, M.2
Schwanhausser, B.3
Vasile, A.4
Murakawa, Y.5
Schueler, M.6
Youngs, N.7
Penfold-Brown, D.8
Drew, K.9
Milek, M.10
Wyler, E.11
Bonneau, R.12
Selbach, M.13
Dieterich, C.14
Landthaler, M.15
-
6
-
-
0027412196
-
ALSCRIPT - A tool for multiple sequence alignments
-
Barton GJ. 1993. ALSCRIPT - a tool for multiple sequence alignments. Protein Engineering 6:37–40. doi: 10.1093/protein/6.1.37.
-
(1993)
Protein Engineering
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
7
-
-
18344396487
-
Lsm proteins and RNA processing
-
Beggs JD. 2005. Lsm proteins and RNA processing. Biochemical Society Transactions 33:433–438. doi: 10.1042/BST0330433.
-
(2005)
Biochemical Society Transactions
, vol.33
, pp. 433-438
-
-
Beggs, J.D.1
-
8
-
-
0037013963
-
P110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor
-
Bell M, Schreiner S, Damianov A, Reddy R, Bindereif A. 2002. p110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor. The EMBO Journal 21:2724–2735. doi:10.1093/emboj/21.11.2724.
-
(2002)
The EMBO Journal
, vol.21
, pp. 2724-2735
-
-
Bell, M.1
Schreiner, S.2
Damianov, A.3
Reddy, R.4
Bindereif, A.5
-
9
-
-
78649656777
-
Characterization of purified human B act spliceosomal complexes reveals compositional and morphological changes during spliceosome activation and first step catalysis
-
Bessonov S, Anokhina M, Krasauskas A, Golas MM, Sander B, Will CL, Urlaub H, Stark H, Lü hrmann R. 2010. Characterization of purified human B act spliceosomal complexes reveals compositional and morphological changes during spliceosome activation and first step catalysis. RNA 16:2384–2403. doi: 10.1261/Rna.2456210.
-
(2010)
RNA
, vol.16
, pp. 2384-2403
-
-
Bessonov, S.1
Anokhina, M.2
Krasauskas, A.3
Golas, M.M.4
Sander, B.5
Will, C.L.6
Urlaub, H.7
Stark, H.8
Lü Hrmann, R.9
-
10
-
-
42249093677
-
Isolation of an active step I spliceosome and composition of its RNP core
-
Bessonov S, Anokhina M, Will CL, Urlaub H, Lu¨ hrmann R. 2008. Isolation of an active step I spliceosome and composition of its RNP core. Nature 452:846–850. doi: 10.1038/nature06842.
-
(2008)
Nature
, vol.452
, pp. 846-850
-
-
Bessonov, S.1
Anokhina, M.2
Will, C.L.3
Urlaub, H.4
Hrmann, L.5
-
11
-
-
0023388440
-
An ordered pathway of snRNP binding during mammalian pre-mRNA splicing complex assembly
-
Bindereif A, Green MR. 1987. An ordered pathway of snRNP binding during mammalian pre-mRNA splicing complex assembly. The EMBO Journal 6:2415–2424.
-
(1987)
The EMBO Journal
, vol.6
, pp. 2415-2424
-
-
Bindereif, A.1
Green, M.R.2
-
12
-
-
0032545097
-
The 2.2 angstrom structure of a permanganatesensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1
-
Bochkarev A, Bochkareva E, Frappier L, Edwards AM. 1998. The 2.2 angstrom structure of a permanganatesensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1. Journal of Molecular Biology 284:1273–1278. doi: 10.1006/jmbi.1998.2247.
-
(1998)
Journal of Molecular Biology
, vol.284
, pp. 1273-1278
-
-
Bochkarev, A.1
Bochkareva, E.2
Frappier, L.3
Edwards, A.M.4
-
13
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNAbinding proteins
-
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW. 2012. Insights into RNA biology from an atlas of mammalian mRNAbinding proteins. Cell 149:1393–1406. doi: 10.1016/j.cell.2012.04.031.
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
Strein, C.6
Davey, N.E.7
Humphreys, D.T.8
Preiss, T.9
Steinmetz, L.M.10
Krijgsveld, J.11
Hentze, M.W.12
-
14
-
-
0023449728
-
Spliceosome assembly in yeast
-
Cheng SC, Abelson J. 1987. Spliceosome assembly in yeast. Genes & Development 1:1014–1027. doi: 10.1101/gad.1.9.1014.
-
(1987)
Genes & Development
, vol.1
, pp. 1014-1027
-
-
Cheng, S.C.1
Abelson, J.2
-
15
-
-
84891810008
-
RNA Bricks-a database of RNA 3D motifs and their interactions
-
Chojnowski G, Walen T, Bujnicki JM. 2014. RNA Bricks-a database of RNA 3D motifs and their interactions. Nucleic Acids Research 42:D123–D31. doi: 10.1093/Nar/Gkt1084.
-
(2014)
Nucleic Acids Research
, vol.42
, pp. 123-131
-
-
Chojnowski, G.1
Walen, T.2
Bujnicki, J.M.3
-
16
-
-
33745860086
-
Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions
-
Deckert J, Hartmuth K, Boehringer D, Behzadnia N, Will CL, Kastner B, Stark H, Urlaub H, Lü hrmann R. 2006. Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions. Molecular and Cellular Biology 26:5528–5543. doi: 10.1128/MCB.00582-06.
-
(2006)
Molecular and Cellular Biology
, vol.26
, pp. 5528-5543
-
-
Deckert, J.1
Hartmuth, K.2
Boehringer, D.3
Behzadnia, N.4
Will, C.L.5
Kastner, B.6
Stark, H.7
Urlaub, H.8
Lü Hrmann, R.9
-
17
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797. doi: 10.1093/Nar/Gkh340.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
18
-
-
77949535720
-
Features and development of Coot. Acta Crystallographica. Section D
-
Emsley P, Lohkamp B, Scott WG, Cowtan K. 2010. Features and development of Coot. Acta Crystallographica. Section D, Biological Crystallography 66:486–501. doi: 10.1107/S0907444910007493.
-
(2010)
Biological Crystallography
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
19
-
-
70449625597
-
The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome
-
Fabrizio P, Dannenberg J, Dube P, Kastner B, Stark H, Urlaub H, Lu¨ hrmann R. 2009. The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Molecular Cell 36:593–608. doi: 10.1016/j.molcel.2009.09.040.
-
(2009)
Molecular Cell
, vol.36
, pp. 593-608
-
-
Fabrizio, P.1
Dannenberg, J.2
Dube, P.3
Kastner, B.4
Stark, H.5
Urlaub, H.6
Hrmann, L.7
-
20
-
-
0024792715
-
In vitro assembly of yeast U6 snRNP: A functional assay
-
Fabrizio P, McPheeters DS, Abelson J. 1989. In vitro assembly of yeast U6 snRNP: a functional assay. Genes & Development 3:2137–2150. doi: 10.1101/gad.3.12b.2137.
-
(1989)
Genes & Development
, vol.3
, pp. 2137-2150
-
-
Fabrizio, P.1
McPheeters, D.S.2
Abelson, J.3
-
21
-
-
0000122573
-
PHYLIP—phylogeny inference package
-
Felsenstein J. 1989. PHYLIP—phylogeny inference package. Cladistics 5:164–166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
22
-
-
0028144641
-
A stem/loop in U6 RNA defines a conformational switch required for premessenger RNA splicing
-
Fortner DM, Troy RG, Brow DA. 1994. A stem/loop in U6 RNA defines a conformational switch required for premessenger RNA splicing. Genes & Development 8:221–233. doi: 10.1101/Gad.8.2.221.
-
(1994)
Genes & Development
, vol.8
, pp. 221-233
-
-
Fortner, D.M.1
Troy, R.G.2
Brow, D.A.3
-
23
-
-
0037189582
-
Central region of the human splicing factor Hprp3p interacts with Hprp4p
-
Gonzalez-Santos JM, Wang A, Jones J, Ushida C, Liu J, Hu J. 2002. Central region of the human splicing factor Hprp3p interacts with Hprp4p. The Journal of Biological Chemistry 277:23764–23772. doi: 10.1074/jbc.M111461200.
-
(2002)
The Journal of Biological Chemistry
, vol.277
, pp. 23764-23772
-
-
Gonzalez-Santos, J.M.1
Wang, A.2
Jones, J.3
Ushida, C.4
Liu, J.5
Hu, J.6
-
24
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm L, Park J. 2000. DaliLite workbench for protein structure comparison. Bioinformatics 16:566–567. doi: 10.1093/bioinformatics/16.6.566.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
-
25
-
-
24644477536
-
Structure of a bacterial BLUF photoreceptor: Insights into blue light-mediated signal transduction
-
Jung A, Domratcheva T, Tarutina M, Wu Q, Ko WH, Shoeman RL, Gomelsky M, Gardner KH, Schlichting L. 2005. Structure of a bacterial BLUF photoreceptor: Insights into blue light-mediated signal transduction. Proceedings of the National Academy of Sciences of USA 102:12350–12355. doi: 10.1073/pnas.0500722102.
-
(2005)
Proceedings of the National Academy of Sciences of USA
, vol.102
, pp. 12350-12355
-
-
Jung, A.1
Domratcheva, T.2
Tarutina, M.3
Wu, Q.4
Ko, W.H.5
Shoeman, R.L.6
Gomelsky, M.7
Gardner, K.H.8
Schlichting, L.9
-
26
-
-
76449099287
-
XDS. Acta Crystallographica. Section D
-
Kabsch W. 2010. XDS. Acta Crystallographica. Section D, Biological Crystallography 66:125–132. doi: 10.1107/S0907444909047337.
-
(2010)
Biological Crystallography
, vol.66
, pp. 125-132
-
-
Kabsch, W.1
-
27
-
-
32044447209
-
RNA structure and RNA-protein interactions in purified yeast U6 snRNPs
-
Karaduman R, Fabrizio P, Hartmuth K, Urlaub H, Lu¨ hrmann R. 2006. RNA structure and RNA-protein interactions in purified yeast U6 snRNPs. Journal of Molecular Biology 356:1248–1262. doi: 10.1016/j.jmb.2005.12.013.
-
(2006)
Journal of Molecular Biology
, vol.356
, pp. 1248-1262
-
-
Karaduman, R.1
Fabrizio, P.2
Hartmuth, K.3
Urlaub, H.4
Hrmann, L.5
-
28
-
-
0023659462
-
Interactions between small nuclear ribonucleoprotein particles in formation of spliceosomes
-
Konarska MM, Sharp PA. 1987. Interactions between small nuclear ribonucleoprotein particles in formation of spliceosomes. Cell 49:763–774. doi: 10.1016/0092-8674(87)90614-3.
-
(1987)
Cell
, vol.49
, pp. 763-774
-
-
Konarska, M.M.1
Sharp, P.A.2
-
29
-
-
32444443532
-
Repositioning of the reaction intermediate within the catalytic center of the spliceosome
-
Konarska MM, Vilardell J, Query CC. 2006. Repositioning of the reaction intermediate within the catalytic center of the spliceosome. Molecular Cell 21:543–553. doi: 10.1016/j.molcel.2006.01.017.
-
(2006)
Molecular Cell
, vol.21
, pp. 543-553
-
-
Konarska, M.M.1
Vilardell, J.2
Query, C.C.3
-
30
-
-
0027761185
-
Disruption of base pairing between the 5′ splice site and the 5′ end of U1 snRNA is required for spliceosome assembly
-
Konforti BB, Koziolkiewicz MJ, Konarska MM. 1993. Disruption of base pairing between the 5′ splice site and the 5′ end of U1 snRNA is required for spliceosome assembly. Cell 75:863–873. doi: 10.1016/0092-8674(93)90531-T.
-
(1993)
Cell
, vol.75
, pp. 863-873
-
-
Konforti, B.B.1
Koziolkiewicz, M.J.2
Konarska, M.M.3
-
31
-
-
84867308898
-
Structural bioinformatics of the human spliceosomal proteome
-
Korneta I, Magnus M, Bujnicki JM. 2012. Structural bioinformatics of the human spliceosomal proteome. Nucleic Acids Research 40:7046–7065. doi: 10.1093/nar/gks347.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 7046-7065
-
-
Korneta, I.1
Magnus, M.2
Bujnicki, J.M.3
-
32
-
-
0021691190
-
The 5′ terminus of the RNA moiety of U1 small nuclear ribonucleoprotein particles is required for the splicing of messenger RNA precursors
-
Kramer A, Keller W, Appel B, Lu¨ hrmann R. 1984. The 5′ terminus of the RNA moiety of U1 small nuclear ribonucleoprotein particles is required for the splicing of messenger RNA precursors. Cell 38:299–307. doi: 10.1016/0092-8674(84)90551-8.
-
(1984)
Cell
, vol.38
, pp. 299-307
-
-
Kramer, A.1
Keller, W.2
Appel, B.3
Hrmann, L.4
-
33
-
-
0030659457
-
PDBsum: A Web-based database of summaries and analyses of all PDB structures
-
Laskowski RA, Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM. 1997. PDBsum: a Web-based database of summaries and analyses of all PDB structures. Trends in Biochemical Sciences 22:488–490. doi: 10.1016/S0968-0004(97)01140-7.
-
(1997)
Trends in Biochemical Sciences
, vol.22
, pp. 488-490
-
-
Laskowski, R.A.1
Hutchinson, E.G.2
Michie, A.D.3
Wallace, A.C.4
Jones, M.L.5
Thornton, J.M.6
-
34
-
-
84860406655
-
Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31
-
Liu S, Ghalei H, Lü hrmann R, Wahl MC. 2011. Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. RNA 17:1655–1663. doi: 10.1261/rna.2690611.
-
(2011)
RNA
, vol.17
, pp. 1655-1663
-
-
Liu, S.1
Ghalei, H.2
Lü Hrmann, R.3
Wahl, M.C.4
-
35
-
-
34147095881
-
-
Liu S, Li P, Dybkov O, Nottrott S, Hartmuth K, Lü hrmann R, Carlomagno T, Wahl MC. 2007. Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP. Science 316:115–120. doi: 10.1126/science.1137924.
-
(2007)
Binding of the Human Prp31 Nop Domain to a Composite Rna-Protein Platform in U4 Snrnp. Science
, vol.316
, pp. 115-120
-
-
Liu, S.1
Li, P.2
Dybkov, O.3
Nottrott, S.4
Hartmuth, K.5
Lü Hrmann, R.6
Carlomagno, T.7
Wahl, M.C.8
-
36
-
-
33745613530
-
The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP
-
Liu S, Rauhut R, Vornlocher HP, Lu¨ hrmann R. 2006. The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP. RNA 12:1418–1430. doi: 10.1261/rna.55406.
-
(2006)
RNA
, vol.12
, pp. 1418-1430
-
-
Liu, S.1
Rauhut, R.2
Vornlocher, H.P.3
Hrmann, L.4
-
37
-
-
0025681699
-
Multiple roles for U6 snRNA in the splicing pathway
-
Madhani HD, Bordonne R, Guthrie C. 1990. Multiple roles for U6 snRNA in the splicing pathway. Genes & Development 4:2264–2277. doi: 10.1101/gad.4.12b.2264.
-
(1990)
Genes & Development
, vol.4
, pp. 2264-2277
-
-
Madhani, H.D.1
Bordonne, R.2
Guthrie, C.3
-
38
-
-
33846426122
-
Solving structures of protein complexes by molecular replacement with phaser. Acta Crystallographica. Section D
-
McCoy AJ. 2007. Solving structures of protein complexes by molecular replacement with phaser. Acta Crystallographica. Section D, Biological Crystallography 63:32–41. doi: 10.1107/S0907444906045975.
-
(2007)
Biological Crystallography
, vol.63
, pp. 32-41
-
-
McCoy, A.J.1
-
39
-
-
33745933955
-
HKL-3000: The integration of data reduction and structure solution–from diffraction images to an initial model in minutes. Acta Crystallographica. Section D
-
Minor W, Cymborowski M, Otwinowski Z, Chruszcz M. 2006. HKL-3000: the integration of data reduction and structure solution–from diffraction images to an initial model in minutes. Acta Crystallographica. Section D, Biological Crystallography 62:859–866. doi: 10.1107/S0907444906019949.
-
(2006)
Biological Crystallography
, vol.62
, pp. 859-866
-
-
Minor, W.1
Cymborowski, M.2
Otwinowski, Z.3
Chruszcz, M.4
-
40
-
-
84901943586
-
Core structure of the U6 small nuclear ribonucleoprotein at 1.7-angstrom resolution
-
Montemayor EJ, Curran EC, Liao HH, Andrews KL, Treba CN, Butcher SE, Brow DA. 2014. Core structure of the U6 small nuclear ribonucleoprotein at 1.7-angstrom resolution. Nature Structural & Molecular Biology 21:544–551. doi: 10.1038/Nsmb.2832.
-
(2014)
Nature Structural & Molecular Biology
, vol.21
, pp. 544-551
-
-
Montemayor, E.J.1
Curran, E.C.2
Liao, H.H.3
Rews, K.L.4
Treba, C.N.5
Butcher, S.E.6
Brow, D.A.7
-
41
-
-
0020773732
-
The U1 small nuclear RNA-protein complex selectively binds a 5′ splice site in vitro
-
Mount SM, Pettersson I, Hinterberger M, Karmas A, Steitz JA. 1983. The U1 small nuclear RNA-protein complex selectively binds a 5′ splice site in vitro. Cell 33:509–518. doi: 10.1016/0092-8674(83)90432-4.
-
(1983)
Cell
, vol.33
, pp. 509-518
-
-
Mount, S.M.1
Pettersson, I.2
Hinterberger, M.3
Karmas, A.4
Steitz, J.A.5
-
42
-
-
84879797997
-
Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8
-
Mozaffari-Jovin S, Wandersleben T, Santos KF, Will CL, Lü hrmann R, Wahl MC. 2013. Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8. Science 341:80–84. doi: 10.1126/science.1237515.
-
(2013)
Science
, vol.341
, pp. 80-84
-
-
Mozaffari-Jovin, S.1
Wandersleben, T.2
Santos, K.F.3
Will, C.L.4
Lü Hrmann, R.5
Wahl, M.C.6
-
43
-
-
79953763877
-
Refmac5 for the refinement of macromolecular crystal structures. Acta Crystallographica. Section D
-
Murshudov GN, Skubak P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA. 2011. Refmac5 for the refinement of macromolecular crystal structures. Acta Crystallographica. Section D, Biological Crystallography 67:355–367. doi: 10.1107/S0907444911001314.
-
(2011)
Biological Crystallography
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
44
-
-
0028961335
-
SCOP—a structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C. 1995. SCOP—a structural classification of proteins database for the investigation of sequences and structures. Journal of Molecular Biology 247:536–540. doi: 10.1016/S0022-2836(05)80134-2.
-
(1995)
Journal of Molecular Biology
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
45
-
-
0033229873
-
Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA
-
Nottrott S, Hartmuth K, Fabrizio P, Urlaub H, Vidovic I, Ficner R, Lu¨ hrmann R. 1999. Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA. The EMBO Journal 18: 6119–6133. doi: 10.1093/emboj/18.21.6119.
-
(1999)
The EMBO Journal
, vol.18
, pp. 6119-6133
-
-
Nottrott, S.1
Hartmuth, K.2
Fabrizio, P.3
Urlaub, H.4
Vidovic, I.5
Ficner, R.6
Hrmann, L.7
-
46
-
-
0037107418
-
Hierarchical, clustered protein interactions with U4/U6 snRNA: A biochemical role for U4/U6 proteins
-
Nottrott S, Urlaub H, Lü hrmann R. 2002. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. The EMBO Journal 21:5527–5538. doi: 10.1093/emboj/cdf544.
-
(2002)
The EMBO Journal
, vol.21
, pp. 5527-5538
-
-
Nottrott, S.1
Urlaub, H.2
Lü Hrmann, R.3
-
47
-
-
0028004607
-
Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
-
Oubridge C, Ito N, Evans PR, Teo CH, Nagai K. 1994. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372:432–438. doi: 10.1038/372432a0.
-
(1994)
Nature
, vol.372
, pp. 432-438
-
-
Oubridge, C.1
Ito, N.2
Evans, P.R.3
Teo, C.H.4
Nagai, K.5
-
48
-
-
0023663370
-
Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA
-
Parker R, Siliciano PG, Guthrie C. 1987. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA. Cell 49:229–239. doi: 10.1016/0092-8674(87)90564-2.
-
(1987)
Cell
, vol.49
, pp. 229-239
-
-
Parker, R.1
Siliciano, P.G.2
Guthrie, C.3
-
49
-
-
84864869079
-
Structure determination by multiplewavelength anomalous dispersion (MAD) at the Pr LIII edge. Acta Crystallographica. Section F
-
Puehringer S, Hellmig M, Liu S, Weiss MS, Wahl MC, Mueller U. 2012. Structure determination by multiplewavelength anomalous dispersion (MAD) at the Pr LIII edge. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications 68:981–984. doi: 10.1107/S1744309112025456.
-
(2012)
Structural Biology and Crystallization Communications
, vol.68
, pp. 981-984
-
-
Puehringer, S.1
Hellmig, M.2
Liu, S.3
Weiss, M.S.4
Wahl, M.C.5
Mueller, U.6
-
50
-
-
0036849242
-
A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRN Pformation
-
Rader SD, Guthrie C. 2002. A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRN Pformation. RNA 8:1378–1392. doi: 10.1017/S1355838202020010.
-
(2002)
RNA
, vol.8
, pp. 1378-1392
-
-
Rader, S.D.1
Guthrie, C.2
-
51
-
-
0032488860
-
A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles
-
Raghunathan PL, Guthrie C. 1998. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. Science 279:857–860. doi: 10.1126/science.279.5352.857.
-
(1998)
Science
, vol.279
, pp. 857-860
-
-
Raghunathan, P.L.1
Guthrie, C.2
-
52
-
-
0036676886
-
The conserved central domain of yeast U6 snRNA: Importance of U2-U6 helix I-a in spliceosome assembly
-
Ryan DE, Abelson J. 2002. The conserved central domain of yeast U6 snRNA: Importance of U2-U6 helix I-a in spliceosome assembly. RNA 8:997–1010. doi: 10.1017/S1355838202025013.
-
(2002)
RNA
, vol.8
, pp. 997-1010
-
-
Ryan, D.E.1
Abelson, J.2
-
53
-
-
0036667321
-
The 5′ and 3′ domains of yeast U6 snRNA: Lsm proteins facilitate binding of Prp24 protein to the U6 telestem region
-
Ryan DE, Stevens SW, Abelson J. 2002. The 5′ and 3′ domains of yeast U6 snRNA: Lsm proteins facilitate binding of Prp24 protein to the U6 telestem region. RNA 8:1011–1033. doi: 10.1017/S1355838202026092.
-
(2002)
RNA
, vol.8
, pp. 1011-1033
-
-
Ryan, D.E.1
Stevens, S.W.2
Abelson, J.3
-
54
-
-
84934441299
-
Quantitative analysis of protein-RNA interactions by gel mobility shift
-
Ryder SP, Recht MI, Williamson JR. 2008. Quantitative analysis of protein-RNA interactions by gel mobility shift. Methods in Molecular Biology 488:99–115. doi:10.1007/978-1-60327-475-3_7.
-
(2008)
Methods in Molecular Biology
, vol.488
, pp. 99-115
-
-
Ryder, S.P.1
Recht, M.I.2
Williamson, J.R.3
-
55
-
-
84867913431
-
Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome
-
Santos KF, Mozaffari-Jovin S, Weber G, Pena V, Lü hrmann R, Wahl MC. 2012. Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome. Proceedings of the National Academy of Sciences of USA 109:17418–17423. doi: 10.1073/pnas.1208098109.
-
(2012)
Proceedings of the National Academy of Sciences of USA
, vol.109
, pp. 17418-17423
-
-
Santos, K.F.1
Mozaffari-Jovin, S.2
Weber, G.3
Pena, V.4
Lü Hrmann, R.5
Wahl, M.C.6
-
56
-
-
33748778456
-
RNA structural requirements for the association of the spliceosomal hPrp31 protein with the U4 and U4atac snRNP
-
Schultz A, Nottrott S, Hartmuth K, Lü hrmann R. 2006. RNA structural requirements for the association of the spliceosomal hPrp31 protein with the U4 and U4atac snRNP. The Journal of Biological Chemistry 281: 28278–28286. doi: 10.1074/jbc.M603350200.
-
(2006)
The Journal of Biological Chemistry
, vol.281
, pp. 28278-28286
-
-
Schultz, A.1
Nottrott, S.2
Hartmuth, K.3
Lü Hrmann, R.4
-
57
-
-
33644894371
-
The Cajal body: A meeting place for spliceosomal snRNPs in the nuclear maze
-
Stanek D, Neugebauer KM. 2006. The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze. Chromosoma 115:343–354. doi: 10.1007/s00412-006-0056-6.
-
(2006)
Chromosoma
, vol.115
, pp. 343-354
-
-
Stanek, D.1
Neugebauer, K.M.2
-
58
-
-
14844294424
-
Protein production by auto-induction in high-density shaking cultures
-
Studier FW. 2005. Protein production by auto-induction in high-density shaking cultures. Protein Expres Purif 41: 207–234. doi: 10.1016/j.pep.2005.01.016.
-
(2005)
Protein Expres Purif
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
59
-
-
0031568309
-
Crystal structure of common type acylphosphatase from bovine testis
-
Thunnissen MMGM, Taddei N, Liguri G, Ramponi G, Nordlund P. 1997. Crystal structure of common type acylphosphatase from bovine testis. Structure 5:69–79. doi: 10.1016/S0969-2126(97)00167-6.
-
(1997)
Structure
, vol.5
, pp. 69-79
-
-
Thunnissen, M.1
Taddei, N.2
Liguri, G.3
Ramponi, G.4
Nordlund, P.5
-
60
-
-
79952994820
-
Web servers and services for electrostatics calculations with APBS and PDB2PQR
-
Unni S, Huang Y, Hanson RM, Tobias M, Krishnan S, Li WW, Nielsen JE, Baker NA. 2011. Web servers and services for electrostatics calculations with APBS and PDB2PQR. Journal of Computational Chemistry 32:1488–1491. doi: 10.1002/jcc.21720.
-
(2011)
Journal of Computational Chemistry
, vol.32
, pp. 1488-1491
-
-
Unni, S.1
Huang, Y.2
Hanson, R.M.3
Tobias, M.4
Krishnan, S.5
Li, W.W.6
Nielsen, J.E.7
Baker, N.A.8
-
61
-
-
74549194551
-
Molecular replacement with MOLREP. Acta Crystallographica. Section D
-
Vagin A, Teplyakov A. 2010. Molecular replacement with MOLREP. Acta Crystallographica. Section D, Biological Crystallography 66:22–25. doi: 10.1107/S0907444909042589.
-
(2010)
Biological Crystallography
, vol.66
, pp. 22-25
-
-
Vagin, A.1
Teplyakov, A.2
-
62
-
-
0034675921
-
Crystal structure of the cell division protein FtsA from Thermotoga maritima
-
van den Ent F, Lowe J. 2000. Crystal structure of the cell division protein FtsA from Thermotoga maritima. The EMBO Journal 19:5300–5307. doi: 10.1093/emboj/19.20.5300.
-
(2000)
The EMBO Journal
, vol.19
, pp. 5300-5307
-
-
Van Den Ent, F.1
Lowe, J.2
-
63
-
-
4344673615
-
Lsm proteins promote regeneration of pre-mRNA splicing activity
-
Verdone L, Galardi S, Page D, Beggs JD. 2004. Lsm proteins promote regeneration of pre-mRNA splicing activity. Current Biology 14:1487–1491. doi: 10.1016/j.cub.2004.08.032.
-
(2004)
Current Biology
, vol.14
, pp. 1487-1491
-
-
Verdone, L.1
Galardi, S.2
Page, D.3
Beggs, J.D.4
-
64
-
-
0032755703
-
Characterization of U6 snRNA-protein interactions
-
Vidal VPI, Verdone L, Mayes AE, Beggs JD. 1999. Characterization of U6 snRNA-protein interactions. RNA 5: 1470–1481. doi: 10.1017/S1355838299991355.
-
(1999)
RNA
, vol.5
, pp. 1470-1481
-
-
Vidal, V.1
Verdone, L.2
Mayes, A.E.3
Beggs, J.D.4
-
65
-
-
0034509631
-
Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
-
Vidovic I, Nottrott S, Hartmuth K, Lü hrmann R, Ficner R. 2000. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. Molecular Cell 6:1331–1342. doi: 10.1016/S1097-2765(00)00131-3.
-
(2000)
Molecular Cell
, vol.6
, pp. 1331-1342
-
-
Vidovic, I.1
Nottrott, S.2
Hartmuth, K.3
Lü Hrmann, R.4
Ficner, R.5
-
66
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Lu¨ hrmann R. 2009. The spliceosome: design principles of a dynamic RNP machine. Cell 136: 701–718. doi: 10.1016/j.cell.2009.02.009.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Hrmann, L.3
-
67
-
-
71449119694
-
Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components
-
Warkocki Z, Odenwä lder P, Schmitzova J, Platzmann F, Stark H, Urlaub H, Ficner R, Fabrizio P, Lü hrmann R. 2009. Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components. Nature Structural & Molecular Biology 16:1237–1243. doi: 10.1038/nsmb.1729.
-
(2009)
Nature Structural & Molecular Biology
, vol.16
, pp. 1237-1243
-
-
Warkocki, Z.1
Odenwä Lder, P.2
Schmitzova, J.3
Platzmann, F.4
Stark, H.5
Urlaub, H.6
Ficner, R.7
Fabrizio, P.8
Lü Hrmann, R.9
-
69
-
-
0026500367
-
Reconstituted mammalian U4/U6 snRNP complements splicing - A mutational analysis
-
Wolff T, Bindereif A. 1992. Reconstituted mammalian U4/U6 snRNP complements splicing - a mutational analysis. The EMBO Journal 11:345–359.
-
(1992)
The EMBO Journal
, vol.11
, pp. 345-359
-
-
Wolff, T.1
Bindereif, A.2
-
70
-
-
0027220788
-
Conformational changes of U6 RNA during the spliceosome cycle: An intramolecular helix is essential both for initiating the U4-U6 interaction and for the first step of slicing
-
Wolff T, Bindereif A. 1993. Conformational changes of U6 RNA during the spliceosome cycle: an intramolecular helix is essential both for initiating the U4-U6 interaction and for the first step of slicing. Genes & Development 7: 1377–1389. doi: 10.1101/gad.7.7b.1377.
-
(1993)
Genes & Development
, vol.7
, pp. 1377-1389
-
-
Wolff, T.1
Bindereif, A.2
-
71
-
-
0029128105
-
Mutational analysis of human U6 RNA: Stabilizing the intramolecular helix blocks the spliceosomal assembly pathway
-
Wolff T, Bindereif A. 1995. Mutational analysis of human U6 RNA: stabilizing the intramolecular helix blocks the spliceosomal assembly pathway. Biochimica et Biophysica Acta 1263:39–44. doi: 10.1016/0167-4781(95)00085-U.
-
(1995)
Biochimica Et Biophysica Acta
, vol.1263
, pp. 39-44
-
-
Wolff, T.1
Bindereif, A.2
-
72
-
-
0024743838
-
Mammalian pre-mRNA branch site selection by U2 snRNP involves base pairing
-
Wu J, Manley JL. 1989. Mammalian pre-mRNA branch site selection by U2 snRNP involves base pairing. Genes & Development 3:1553–1561. doi: 10.1101/gad.3.10.1553.
-
(1989)
Genes & Development
, vol.3
, pp. 1553-1561
-
-
Wu, J.1
Manley, J.L.2
-
73
-
-
0025941556
-
U4 small nuclear RNA dissociates from a yeast spliceosome and does not participate in the subsequent splicing reaction
-
Yean SL, Lin RJ. 1991. U4 small nuclear RNA dissociates from a yeast spliceosome and does not participate in the subsequent splicing reaction. Molecular and Cellular Biology 11:5571–5577. doi: 10.1128/MCB.11.11.5571.
-
(1991)
Molecular and Cellular Biology
, vol.11
, pp. 5571-5577
-
-
Yean, S.L.1
Lin, R.J.2
-
74
-
-
84864462812
-
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
-
Zhang HK, Gao SH, Lercher MJ, Hu SN, Chen WH. 2012. EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Research 40:W569–W72. doi: 10.1093/Nar/Gks576.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 569-572
-
-
Zhang, H.K.1
Gao, S.H.2
Lercher, M.J.3
Hu, S.N.4
Chen, W.H.5
-
75
-
-
84893774907
-
Crystal structures of the Lsm complex bound to the 3′ end sequence of U6 small nuclear RNA
-
Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C, Shi Y. 2014. Crystal structures of the Lsm complex bound to the 3′ end sequence of U6 small nuclear RNA. Nature 506:116–120. doi: 10.1038/nature12803.
-
(2014)
Nature
, vol.506
, pp. 116-120
-
-
Zhou, L.1
Hang, J.2
Zhou, Y.3
Wan, R.4
Lu, G.5
Yin, P.6
Yan, C.7
Shi, Y.8
-
76
-
-
0024744567
-
A compensatory base change in human U2 snRNA can suppress a branch site mutation
-
Zhuang Y, Weiner AM. 1989. A compensatory base change in human U2 snRNA can suppress a branch site mutation. Genes & Development 3:1545–1552. doi: 10.1101/gad.3.10.1545.Liu
-
(1989)
Genes & Development
, vol.3
, pp. 1545-1552
-
-
Zhuang, Y.1
Weiner, A.M.2
|