-
1
-
-
79952232216
-
Global cancer statistics
-
Jemal A, Bray F, Center MM, Ferlay J, Ward E and Forman D. Global cancer statistics. CA: a cancer journal for clinicians. 2011; 61:69-90.
-
(2011)
CA: a cancer journal for clinicians
, vol.61
, pp. 69-90
-
-
Jemal, A.1
Bray, F.2
Center, M.M.3
Ferlay, J.4
Ward, E.5
Forman, D.6
-
2
-
-
12844277985
-
Estimates of cancer incidence in China for 2000 and projections for 2005
-
Yang L, Parkin DM, Ferlay J, Li L and Chen Y. Estimates of cancer incidence in China for 2000 and projections for 2005. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2005; 14:243-250.
-
(2005)
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology
, vol.14
, pp. 243-250
-
-
Yang, L.1
Parkin, D.M.2
Ferlay, J.3
Li, L.4
Chen, Y.5
-
3
-
-
80053455840
-
Identification of a DNA methylome signature of esophageal squamous cell carcinoma and potential epigenetic biomarkers
-
Lima SC, Hernandez-Vargas H, Simao T, Durand G, Kruel CD, Le Calvez-Kelm F, Ribeiro Pinto LF and Herceg Z. Identification of a DNA methylome signature of esophageal squamous cell carcinoma and potential epigenetic biomarkers. Epigenetics : official journal of the DNA Methylation Society. 2011; 6:1217-1227.
-
(2011)
Epigenetics : official journal of the DNA Methylation Society
, vol.6
, pp. 1217-1227
-
-
Lima, S.C.1
Hernandez-Vargas, H.2
Simao, T.3
Durand, G.4
Kruel, C.D.5
Le Calvez-Kelm, F.6
Ribeiro Pinto, L.F.7
Herceg, Z.8
-
4
-
-
84872172807
-
Promoter methylation of tumor suppressor genes in esophageal squamous cell carcinoma
-
Li JS, Ying JM, Wang XW, Wang ZH, Tao Q and Li LL. Promoter methylation of tumor suppressor genes in esophageal squamous cell carcinoma. Chin J Cancer. 2013; 32:3-11.
-
(2013)
Chin J Cancer
, vol.32
, pp. 3-11
-
-
Li, J.S.1
Ying, J.M.2
Wang, X.W.3
Wang, Z.H.4
Tao, Q.5
Li, L.L.6
-
5
-
-
84865468504
-
Identification of PTK6, via RNA Sequencing Analysis, as a Suppressor of Esophageal Squamous Cell Carcinoma
-
Ma S, Bao JYJ, Kwan PS, Chan YP, Tong CM, Fu L, Zhang N, Tong AHY, Qin YR, Tsao SW, Chan KW, Lok S and Guan XY. Identification of PTK6, via RNA Sequencing Analysis, as a Suppressor of Esophageal Squamous Cell Carcinoma. Gastroenterology. 2012; 143:675-686.e612.
-
(2012)
Gastroenterology
, vol.143
, pp. 675-686.e612
-
-
Ma, S.1
Bao, J.Y.J.2
Kwan, P.S.3
Chan, Y.P.4
Tong, C.M.5
Fu, L.6
Zhang, N.7
Tong, A.H.Y.8
Qin, Y.R.9
Tsao, S.W.10
Chan, K.W.11
Lok, S.12
Guan, X.Y.13
-
6
-
-
84869228632
-
Rab25 is a tumor suppressor gene with antiangiogenic and anti-invasive activities in esophageal squamous cell carcinoma
-
Tong M, Chan KW, Bao JY, Wong KY, Chen JN, Kwan PS, Tang KH, Fu L, Qin YR, Lok S, Guan XY and Ma S. Rab25 is a tumor suppressor gene with antiangiogenic and anti-invasive activities in esophageal squamous cell carcinoma. Cancer Res. 2012; 72:6024-6035.
-
(2012)
Cancer Res
, vol.72
, pp. 6024-6035
-
-
Tong, M.1
Chan, K.W.2
Bao, J.Y.3
Wong, K.Y.4
Chen, J.N.5
Kwan, P.S.6
Tang, K.H.7
Fu, L.8
Qin, Y.R.9
Lok, S.10
Guan, X.Y.11
Ma, S.12
-
7
-
-
79960037044
-
miR-29c induces cell cycle arrest in esophageal squamous cell carcinoma by modulating cyclin E expression
-
Ding DP, Chen ZL, Zhao XH, Wang JW, Sun J, Wang Z, Tan FW, Tan XG, Li BZ, Zhou F, Shao K, Li N, Qiu B and He J. miR-29c induces cell cycle arrest in esophageal squamous cell carcinoma by modulating cyclin E expression. Carcinogenesis. 2011; 32:1025-1032.
-
(2011)
Carcinogenesis
, vol.32
, pp. 1025-1032
-
-
Ding, D.P.1
Chen, Z.L.2
Zhao, X.H.3
Wang, J.W.4
Sun, J.5
Wang, Z.6
Tan, F.W.7
Tan, X.G.8
Li, B.Z.9
Zhou, F.10
Shao, K.11
Li, N.12
Qiu, B.13
He, J.14
-
8
-
-
84861222679
-
MicroRNA-25 promotes cell migration and invasion in esophageal squamous cell carcinoma
-
Xu X, Chen Z, Zhao X, Wang J, Ding D, Wang Z, Tan F, Tan X, Zhou F, Sun J, Sun N, Gao Y, Shao K, Li N, Qiu B and He J. MicroRNA-25 promotes cell migration and invasion in esophageal squamous cell carcinoma. Biochem Biophys Res Commun. 2012; 421:640-645.
-
(2012)
Biochem Biophys Res Commun
, vol.421
, pp. 640-645
-
-
Xu, X.1
Chen, Z.2
Zhao, X.3
Wang, J.4
Ding, D.5
Wang, Z.6
Tan, F.7
Tan, X.8
Zhou, F.9
Sun, J.10
Sun, N.11
Gao, Y.12
Shao, K.13
Li, N.14
Qiu, B.15
He, J.16
-
9
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009; 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
-
10
-
-
84873300214
-
Braveheart, a long noncoding RNA required for cardiovascular lineage commitment
-
Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, Ding H, Butty VL, Torrey L, Haas S, Abo R, Tabebordbar M, Lee RT, Burge CB and Boyer LA. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell. 2013; 152:570-583.
-
(2013)
Cell
, vol.152
, pp. 570-583
-
-
Klattenhoff, C.A.1
Scheuermann, J.C.2
Surface, L.E.3
Bradley, R.K.4
Fields, P.A.5
Steinhauser, M.L.6
Ding, H.7
Butty, V.L.8
Torrey, L.9
Haas, S.10
Abo, R.11
Tabebordbar, M.12
Lee, R.T.13
Burge, C.B.14
Boyer, L.A.15
-
11
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky I, Shkumatava A, Jan CH, Sive H and Bartel DP. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell. 2011; 147:1537-1550.
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
12
-
-
80052869283
-
lincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G, Young G, Lucas AB, Ach R, Bruhn L, Yang X, Amit I, Meissner A, Regev A, Rinn JL, Root DE, et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature. 2011; 477:295-300.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
Yang, X.11
Amit, I.12
Meissner, A.13
Regev, A.14
Rinn, J.L.15
Root, D.E.16
-
13
-
-
84891757415
-
Multiple knockout mouse models reveal lincRNAs are required for life and brain development
-
Sauvageau M, Goff LA, Lodato S, Bonev B, Groff AF, Gerhardinger C, Sanchez-Gomez DB, Hacisuleyman E, Li E, Spence M, Liapis SC, Mallard W, Morse M, Swerdel MR, D'Ecclessis MF, Moore JC, et al. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. eLife. 2013; 2:e01749.
-
(2013)
eLife
, vol.2
, pp. e01749
-
-
Sauvageau, M.1
Goff, L.A.2
Lodato, S.3
Bonev, B.4
Groff, A.F.5
Gerhardinger, C.6
Sanchez-Gomez, D.B.7
Hacisuleyman, E.8
Li, E.9
Spence, M.10
Liapis, S.C.11
Mallard, W.12
Morse, M.13
Swerdel, M.R.14
D'Ecclessis, M.F.15
Moore, J.C.16
-
14
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E and Chang HY. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell. 2007; 129:1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
15
-
-
79955468280
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
-
Kotake Y, Nakagawa T, Kitagawa K, Suzuki S, Liu N, Kitagawa M and Xiong Y. Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene. 2011; 30:1956-1962.
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
Kitagawa, M.6
Xiong, Y.7
-
16
-
-
84873829893
-
The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse
-
Grote P, Wittler L, Hendrix D, Koch F, Wahrisch S, Beisaw A, Macura K, Blass G, Kellis M, Werber M and Herrmann BG. The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse. Developmental cell. 2013; 24:206-214.
-
(2013)
Developmental cell
, vol.24
, pp. 206-214
-
-
Grote, P.1
Wittler, L.2
Hendrix, D.3
Koch, F.4
Wahrisch, S.5
Beisaw, A.6
Macura, K.7
Blass, G.8
Kellis, M.9
Werber, M.10
Herrmann, B.G.11
-
17
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner JR, Iyer MK, Balbin OA, Dhanasekaran SM, Cao Q, Brenner JC, Laxman B, Asangani IA, Grasso CS, Kominsky HD, Cao X, Jing X, Wang X, Siddiqui J, Wei JT, Robinson D, et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol. 2011; 29:742-749.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
Laxman, B.7
Asangani, I.A.8
Grasso, C.S.9
Kominsky, H.D.10
Cao, X.11
Jing, X.12
Wang, X.13
Siddiqui, J.14
Wei, J.T.15
Robinson, D.16
-
18
-
-
84887122461
-
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
-
Prensner JR, Iyer MK, Sahu A, Asangani IA, Cao Q, Patel L, Vergara IA, Davicioni E, Erho N, Ghadessi M, Jenkins RB, Triche TJ, Malik R, Bedenis R, McGregor N, Ma T, et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. Nat Genet. 2013; 45:1392-1398.
-
(2013)
Nat Genet
, vol.45
, pp. 1392-1398
-
-
Prensner, J.R.1
Iyer, M.K.2
Sahu, A.3
Asangani, I.A.4
Cao, Q.5
Patel, L.6
Vergara, I.A.7
Davicioni, E.8
Erho, N.9
Ghadessi, M.10
Jenkins, R.B.11
Triche, T.J.12
Malik, R.13
Bedenis, R.14
McGregor, N.15
Ma, T.16
-
19
-
-
84865319844
-
Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers
-
Brunner AL, Beck AH, Edris B, Sweeney RT, Zhu SX, Li R, Montgomery K, Varma S, Gilks T, Guo X, Foley JW, Witten DM, Giacomini CP, Flynn RA, Pollack JR, Tibshirani R, et al. Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers. Genome Biol. 2012; 13:R75.
-
(2012)
Genome Biol
, vol.13
, pp. R75
-
-
Brunner, A.L.1
Beck, A.H.2
Edris, B.3
Sweeney, R.T.4
Zhu, S.X.5
Li, R.6
Montgomery, K.7
Varma, S.8
Gilks, T.9
Guo, X.10
Foley, J.W.11
Witten, D.M.12
Giacomini, C.P.13
Flynn, R.A.14
Pollack, J.R.15
Tibshirani, R.16
-
20
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, Tsai MC, Hung T, Argani P, Rinn JL, Wang Y, Brzoska P, Kong B, Li R, West RB, van de Vijver MJ, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature. 2010; 464:1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
Wang, Y.11
Brzoska, P.12
Kong, B.13
Li, R.14
West, R.B.15
van de Vijver, M.J.16
-
21
-
-
80054029971
-
Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers
-
Kogo R, Shimamura T, Mimori K, Kawahara K, Imoto S, Sudo T, Tanaka F, Shibata K, Suzuki A, Komune S, Miyano S and Mori M. Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. Cancer Res. 2011; 71:6320-6326.
-
(2011)
Cancer Res
, vol.71
, pp. 6320-6326
-
-
Kogo, R.1
Shimamura, T.2
Mimori, K.3
Kawahara, K.4
Imoto, S.5
Sudo, T.6
Tanaka, F.7
Shibata, K.8
Suzuki, A.9
Komune, S.10
Miyano, S.11
Mori, M.12
-
22
-
-
84893701149
-
LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma
-
Li J, Chen Z, Tian L, Zhou C, He MY, Gao Y, Wang S, Zhou F, Shi S, Feng X, Sun N, Liu Z, Skogerboe G, Dong J, Yao R, Zhao Y, et al. LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma. Gut. 2014; 63:1700-1710.
-
(2014)
Gut
, vol.63
, pp. 1700-1710
-
-
Li, J.1
Chen, Z.2
Tian, L.3
Zhou, C.4
He, M.Y.5
Gao, Y.6
Wang, S.7
Zhou, F.8
Shi, S.9
Feng, X.10
Sun, N.11
Liu, Z.12
Skogerboe, G.13
Dong, J.14
Yao, R.15
Zhao, Y.16
-
23
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A and Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011; 25:1915-1927.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
24
-
-
78249258719
-
MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes
-
Tano K, Mizuno R, Okada T, Rakwal R, Shibato J, Masuo Y, Ijiri K and Akimitsu N. MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes. Febs Lett. 2010; 584:4575-4580.
-
(2010)
Febs Lett
, vol.584
, pp. 4575-4580
-
-
Tano, K.1
Mizuno, R.2
Okada, T.3
Rakwal, R.4
Shibato, J.5
Masuo, Y.6
Ijiri, K.7
Akimitsu, N.8
-
25
-
-
84876125829
-
LncRNADisease: a database for long-non-coding RNA-associated diseases
-
Chen G, Wang Z, Wang D, Qiu C, Liu M, Chen X, Zhang Q, Yan G and Cui Q. LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res. 2013; 41:D983-986.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D983-D986
-
-
Chen, G.1
Wang, Z.2
Wang, D.3
Qiu, C.4
Liu, M.5
Chen, X.6
Zhang, Q.7
Yan, G.8
Cui, Q.9
-
26
-
-
84885919211
-
Long non-coding RNA HOTAIR, a driver of malignancy, predicts negative prognosis and exhibits oncogenic activity in oesophageal squamous cell carcinoma
-
Li X, Wu Z, Mei Q, Guo M, Fu X and Han W. Long non-coding RNA HOTAIR, a driver of malignancy, predicts negative prognosis and exhibits oncogenic activity in oesophageal squamous cell carcinoma. Br J Cancer. 2013; 109:2266-2278.
-
(2013)
Br J Cancer
, vol.109
, pp. 2266-2278
-
-
Li, X.1
Wu, Z.2
Mei, Q.3
Guo, M.4
Fu, X.5
Han, W.6
-
27
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, et al. Integrative analysis of 111 reference human epigenomes. Nature. 2015; 518:317-330.
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
Meuleman, W.2
Ernst, J.3
Bilenky, M.4
Yen, A.5
Heravi-Moussavi, A.6
Kheradpour, P.7
Zhang, Z.8
Wang, J.9
Ziller, M.J.10
Amin, V.11
Whitaker, J.W.12
Schultz, M.D.13
Ward, L.D.14
Sarkar, A.15
Quon, G.16
-
28
-
-
33744947841
-
Transcriptional profiling suggests that Barrett's metaplasia is an early intermediate stage in esophageal adenocarcinogenesis
-
Wang S, Zhan M, Yin J, Abraham JM, Mori Y, Sato F, Xu Y, Olaru A, Berki AT, Li H, Schulmann K, Kan T, Hamilton JP, Paun B, Yu MM, Jin Z, et al. Transcriptional profiling suggests that Barrett's metaplasia is an early intermediate stage in esophageal adenocarcinogenesis. Oncogene. 2006; 25:3346-3356.
-
(2006)
Oncogene
, vol.25
, pp. 3346-3356
-
-
Wang, S.1
Zhan, M.2
Yin, J.3
Abraham, J.M.4
Mori, Y.5
Sato, F.6
Xu, Y.7
Olaru, A.8
Berki, A.T.9
Li, H.10
Schulmann, K.11
Kan, T.12
Hamilton, J.P.13
Paun, B.14
Yu, M.M.15
Jin, Z.16
-
29
-
-
58149236744
-
Roles of TGFβ in metastasis
-
Padua D and Massague J. Roles of TGFβ in metastasis. Cell Res. 2009; 19:89-102.
-
(2009)
Cell Res
, vol.19
, pp. 89-102
-
-
Padua, D.1
Massague, J.2
-
30
-
-
84900316922
-
A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma
-
Yuan JH, Yang F, Wang F, Ma JZ, Guo YJ, Tao QF, Liu F, Pan W, Wang TT, Zhou CC, Wang SB, Wang YZ, Yang Y, Yang N, Zhou WP, Yang GS, et al. A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma. Cancer cell. 2014; 25:666-681.
-
(2014)
Cancer cell
, vol.25
, pp. 666-681
-
-
Yuan, J.H.1
Yang, F.2
Wang, F.3
Ma, J.Z.4
Guo, Y.J.5
Tao, Q.F.6
Liu, F.7
Pan, W.8
Wang, T.T.9
Zhou, C.C.10
Wang, S.B.11
Wang, Y.Z.12
Yang, Y.13
Yang, N.14
Zhou, W.P.15
Yang, G.S.16
-
31
-
-
20444426889
-
A genetic screen identifies PITX1 as a suppressor of RAS activity and tumorigenicity
-
Kolfschoten IG, van Leeuwen B, Berns K, Mullenders J, Beijersbergen RL, Bernards R, Voorhoeve PM and Agami R. A genetic screen identifies PITX1 as a suppressor of RAS activity and tumorigenicity. Cell. 2005; 121:849-858.
-
(2005)
Cell
, vol.121
, pp. 849-858
-
-
Kolfschoten, I.G.1
van Leeuwen, B.2
Berns, K.3
Mullenders, J.4
Beijersbergen, R.L.5
Bernards, R.6
Voorhoeve, P.M.7
Agami, R.8
-
32
-
-
79953153022
-
Identification of PITX1 as a TERT suppressor gene located on human chromosome 5
-
Qi DL, Ohhira T, Fujisaki C, Inoue T, Ohta T, Osaki M, Ohshiro E, Seko T, Aoki S, Oshimura M and Kugoh H. Identification of PITX1 as a TERT suppressor gene located on human chromosome 5. Mol Cell Biol. 2011; 31:1624-1636.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 1624-1636
-
-
Qi, D.L.1
Ohhira, T.2
Fujisaki, C.3
Inoue, T.4
Ohta, T.5
Osaki, M.6
Ohshiro, E.7
Seko, T.8
Aoki, S.9
Oshimura, M.10
Kugoh, H.11
-
33
-
-
62049085786
-
Transcriptome sequencing to detect gene fusions in cancer
-
Maher CA, Kumar-Sinha C, Cao X, Kalyana-Sundaram S, Han B, Jing X, Sam L, Barrette T, Palanisamy N and Chinnaiyan AM. Transcriptome sequencing to detect gene fusions in cancer. Nature. 2009; 458:97-101.
-
(2009)
Nature
, vol.458
, pp. 97-101
-
-
Maher, C.A.1
Kumar-Sinha, C.2
Cao, X.3
Kalyana-Sundaram, S.4
Han, B.5
Jing, X.6
Sam, L.7
Barrette, T.8
Palanisamy, N.9
Chinnaiyan, A.M.10
-
34
-
-
79952816655
-
MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers
-
Steidl C, Shah SP, Woolcock BW, Rui L, Kawahara M, Farinha P, Johnson NA, Zhao Y, Telenius A, Neriah SB, McPherson A, Meissner B, Okoye UC, Diepstra A, van den Berg A, Sun M, et al. MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers. Nature. 2011; 471:377-381.
-
(2011)
Nature
, vol.471
, pp. 377-381
-
-
Steidl, C.1
Shah, S.P.2
Woolcock, B.W.3
Rui, L.4
Kawahara, M.5
Farinha, P.6
Johnson, N.A.7
Zhao, Y.8
Telenius, A.9
Neriah, S.B.10
McPherson, A.11
Meissner, B.12
Okoye, U.C.13
Diepstra, A.14
van den Berg, A.15
Sun, M.16
-
35
-
-
84868149174
-
Transcriptome sequencing in Sezary syndrome identifies Sezary cell and mycosis fungoides-associated lncRNAs and novel transcripts
-
Lee CS, Ungewickell A, Bhaduri A, Qu K, Webster DE, Armstrong R, Weng WK, Aros CJ, Mah A, Chen RO, Lin M, Sundram U, Chang HY, Kretz M, Kim YH and Khavari PA. Transcriptome sequencing in Sezary syndrome identifies Sezary cell and mycosis fungoides-associated lncRNAs and novel transcripts. Blood. 2012; 120:3288-3297.
-
(2012)
Blood
, vol.120
, pp. 3288-3297
-
-
Lee, C.S.1
Ungewickell, A.2
Bhaduri, A.3
Qu, K.4
Webster, D.E.5
Armstrong, R.6
Weng, W.K.7
Aros, C.J.8
Mah, A.9
Chen, R.O.10
Lin, M.11
Sundram, U.12
Chang, H.Y.13
Kretz, M.14
Kim, Y.H.15
Khavari, P.A.16
-
36
-
-
84879987789
-
lincRNAs: Genomics, Evolution, and Mechanisms
-
Ulitsky I and Bartel DP. lincRNAs: Genomics, Evolution, and Mechanisms. Cell. 2013; 154:26-46.
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
37
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES and Rinn JL. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences. 2009; 106:11667-11672.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
van Oudenaarden, A.10
Regev, A.11
Lander, E.S.12
Rinn, J.L.13
-
38
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA and Chang HY. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature. 2011; 472:120-124.
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
Chen, Y.6
Lajoie, B.R.7
Protacio, A.8
Flynn, R.A.9
Gupta, R.A.10
Wysocka, J.11
Lei, M.12
Dekker, J.13
Helms, J.A.14
Chang, H.Y.15
-
39
-
-
84897896279
-
The long non-coding RNA Paupar regulates the expression of both local and distal genes
-
Vance KW, Sansom SN, Lee S, Chalei V, Kong L, Cooper SE, Oliver PL and Ponting CP. The long non-coding RNA Paupar regulates the expression of both local and distal genes. The EMBO journal. 2014; 33:296-311.
-
(2014)
The EMBO journal
, vol.33
, pp. 296-311
-
-
Vance, K.W.1
Sansom, S.N.2
Lee, S.3
Chalei, V.4
Kong, L.5
Cooper, S.E.6
Oliver, P.L.7
Ponting, C.P.8
-
40
-
-
84892923750
-
The long noncoding RNA THRIL regulates TNFalpha expression through its interaction with hnRNPL
-
Li Z, Chao TC, Chang KY, Lin N, Patil VS, Shimizu C, Head SR, Burns JC and Rana TM. The long noncoding RNA THRIL regulates TNFalpha expression through its interaction with hnRNPL. Proceedings of the National Academy of Sciences of the United States of America. 2014; 111:1002-1007.
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. 1002-1007
-
-
Li, Z.1
Chao, T.C.2
Chang, K.Y.3
Lin, N.4
Patil, V.S.5
Shimizu, C.6
Head, S.R.7
Burns, J.C.8
Rana, T.M.9
-
41
-
-
84925641949
-
Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma
-
Hao Y, Wu W, Shi F, Dalmolin RJ, Yan M, Tian F, Chen X, Chen G and Cao W. Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma. BMC Cancer. 2015; 15:168.
-
(2015)
BMC Cancer
, vol.15
, pp. 168
-
-
Hao, Y.1
Wu, W.2
Shi, F.3
Dalmolin, R.J.4
Yan, M.5
Tian, F.6
Chen, X.7
Chen, G.8
Cao, W.9
-
42
-
-
84899486799
-
The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation
-
Wang P, Xue Y, Han Y, Lin L, Wu C, Xu S, Jiang Z, Xu J, Liu Q and Cao X. The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation. Science. 2014; 344:310-313.
-
(2014)
Science
, vol.344
, pp. 310-313
-
-
Wang, P.1
Xue, Y.2
Han, Y.3
Lin, L.4
Wu, C.5
Xu, S.6
Jiang, Z.7
Xu, J.8
Liu, Q.9
Cao, X.10
-
43
-
-
84899747138
-
Identification of genomic alterations in oesophageal squamous cell cancer
-
Song Y, Li L, Ou Y, Gao Z, Li E, Li X, Zhang W, Wang J, Xu L, Zhou Y, Ma X, Liu L, Zhao Z, Huang X, Fan J, Dong L, et al. Identification of genomic alterations in oesophageal squamous cell cancer. Nature. 2014; 509:91-95.
-
(2014)
Nature
, vol.509
, pp. 91-95
-
-
Song, Y.1
Li, L.2
Ou, Y.3
Gao, Z.4
Li, E.5
Li, X.6
Zhang, W.7
Wang, J.8
Xu, L.9
Zhou, Y.10
Ma, X.11
Liu, L.12
Zhao, Z.13
Huang, X.14
Fan, J.15
Dong, L.16
-
44
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL and Lander ES. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell. 2006; 125:315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
45
-
-
84872376764
-
Pitx1 broadly associates with limb enhancers and is enriched on hindlimb cis-regulatory elements
-
Infante CR, Park S, Mihala AG, Kingsley DM and Menke DB. Pitx1 broadly associates with limb enhancers and is enriched on hindlimb cis-regulatory elements. Dev Biol. 2013; 374:234-244.
-
(2013)
Dev Biol
, vol.374
, pp. 234-244
-
-
Infante, C.R.1
Park, S.2
Mihala, A.G.3
Kingsley, D.M.4
Menke, D.B.5
-
46
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
Chu C, Qu K, Zhong FL, Artandi SE and Chang HY. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell. 2011; 44:667-678.
-
(2011)
Mol Cell
, vol.44
, pp. 667-678
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
47
-
-
84879642373
-
The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome
-
Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K and Guttman M. The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. Science. 2013; 341:1237973.
-
(2013)
Science
, vol.341
, pp. 1237973
-
-
Engreitz, J.M.1
Pandya-Jones, A.2
McDonel, P.3
Shishkin, A.4
Sirokman, K.5
Surka, C.6
Kadri, S.7
Xing, J.8
Goren, A.9
Lander, E.S.10
Plath, K.11
Guttman, M.12
-
48
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W, Sherman BT and Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009; 4:44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
49
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR and Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26:841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
50
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Dunham I, Kundaje A, Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, Harrow J, Kaul R, Khatun J, Lajoie BR, Landt SG, Lee BK, Pauli F, Rosenbloom KR, et al. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012; 489:57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
Khatun, J.11
Lajoie, B.R.12
Landt, S.G.13
Lee, B.K.14
Pauli, F.15
Rosenbloom, K.R.16
-
51
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
-
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, Macmanes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 2013; 8:1494-1512.
-
(2013)
Nat Protoc
, vol.8
, pp. 1494-1512
-
-
Haas, B.J.1
Papanicolaou, A.2
Yassour, M.3
Grabherr, M.4
Blood, P.D.5
Bowden, J.6
Couger, M.B.7
Eccles, D.8
Li, B.9
Lieber, M.10
Macmanes, M.D.11
Ott, M.12
Orvis, J.13
Pochet, N.14
Strozzi, F.15
Weeks, N.16
-
52
-
-
84929224156
-
The Functional Characterization of Long Non-coding RNA Lnc bc060912 in Human Lung Carcinoma Cells
-
Luo H, Sun Y, Wei G, Luo J, Yang X, Liu W and Chen R. The Functional Characterization of Long Non-coding RNA Lnc bc060912 in Human Lung Carcinoma Cells. Biochemistry-us. 2015; 54;2895-2902.
-
(2015)
Biochemistry-us
, vol.54
, pp. 2895-2902
-
-
Luo, H.1
Sun, Y.2
Wei, G.3
Luo, J.4
Yang, X.5
Liu, W.6
Chen, R.7
-
53
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES and Mesirov JP. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America. 2005; 102:15545-15550.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
54
-
-
33847397814
-
Gene expression signatures for tumor progression, tumor subtype, and tumor thickness in laser-microdissected melanoma tissues
-
Jaeger J, Koczan D, Thiesen HJ, Ibrahim SM, Gross G, Spang R and Kunz M. Gene expression signatures for tumor progression, tumor subtype, and tumor thickness in laser-microdissected melanoma tissues. Clin Cancer Res. 2007; 13:806-815.
-
(2007)
Clin Cancer Res
, vol.13
, pp. 806-815
-
-
Jaeger, J.1
Koczan, D.2
Thiesen, H.J.3
Ibrahim, S.M.4
Gross, G.5
Spang, R.6
Kunz, M.7
-
55
-
-
55249115818
-
Prediction of future metastasis and molecular characterization of head and neck squamous-cell carcinoma based on transcriptome and genome analysis by microarrays
-
Rickman DS, Millon R, De Reynies A, Thomas E, Wasylyk C, Muller D, Abecassis J and Wasylyk B. Prediction of future metastasis and molecular characterization of head and neck squamous-cell carcinoma based on transcriptome and genome analysis by microarrays. Oncogene. 2008; 27:6607-6622.
-
(2008)
Oncogene
, vol.27
, pp. 6607-6622
-
-
Rickman, D.S.1
Millon, R.2
De Reynies, A.3
Thomas, E.4
Wasylyk, C.5
Muller, D.6
Abecassis, J.7
Wasylyk, B.8
-
56
-
-
11144354901
-
Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis
-
Cromer A, Carles A, Millon R, Ganguli G, Chalmel F, Lemaire F, Young J, Dembele D, Thibault C, Muller D, Poch O, Abecassis J and Wasylyk B. Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene. 2004; 23:2484-2498.
-
(2004)
Oncogene
, vol.23
, pp. 2484-2498
-
-
Cromer, A.1
Carles, A.2
Millon, R.3
Ganguli, G.4
Chalmel, F.5
Lemaire, F.6
Young, J.7
Dembele, D.8
Thibault, C.9
Muller, D.10
Poch, O.11
Abecassis, J.12
Wasylyk, B.13
|