메뉴 건너뛰기




Volumn 6, Issue JUN, 2015, Pages

Relationships between predicted moonlighting proteins, human diseases, and comorbidities from a network perspective

Author keywords

Disease comorbidity; Human disease; Moonlighting proteins; Multifunctional proteins; Protein protein interactions

Indexed keywords

EXTREME MULTIFUNCTIONAL PROTEIN; MEMBRANE PROTEIN; MOONLIGHTING PROTEIN; UNCLASSIFIED DRUG;

EID: 84938255292     PISSN: None     EISSN: 1664042X     Source Type: Journal    
DOI: 10.3389/fphys.2015.00171     Document Type: Article
Times cited : (12)

References (34)
  • 1
    • 37549021103 scopus 로고    scopus 로고
    • Glutamine tract length of human androgen receptors affects hormone-dependent and-independent prostate cancer in mice
    • Albertelli, M. A., O'Mahony, O. A., Brogley, M., Tosoian, J., Steinkamp, M., Daignault, S., et al. (2008). Glutamine tract length of human androgen receptors affects hormone-dependent and-independent prostate cancer in mice. Hum. Mol. Genet. 17, 98-110. doi: 10.1093/hmg/ddm287.
    • (2008) Hum. Mol. Genet , vol.17 , pp. 98-110
    • Albertelli, M.A.1    O'Mahony, O.A.2    Brogley, M.3    Tosoian, J.4    Steinkamp, M.5    Daignault, S.6
  • 2
    • 58149189856 scopus 로고    scopus 로고
    • McKusick's online mendelian inheritance in man (OMIM)
    • Amberger, J., Bocchini, C. A., Scott, A. F., and Hamosh, A. (2009). McKusick's online mendelian inheritance in man (OMIM). Nucleic Acids Res. 37, D793-D796. doi: 10.1093/nar/gkn665.
    • (2009) Nucleic Acids Res , vol.37 , pp. D793-D796
    • Amberger, J.1    Bocchini, C.A.2    Scott, A.F.3    Hamosh, A.4
  • 3
  • 4
    • 34547146985 scopus 로고    scopus 로고
    • Network medicine-from obesity to the "diseasome"
    • Barabási, A.-L. (2007). Network medicine-from obesity to the "diseasome." N. Engl. J. Med. 357, 404-407. doi: 10.1056/NEJMe078114.
    • (2007) N. Engl. J. Med , vol.357 , pp. 404-407
    • Barabási, A.-L.1
  • 5
    • 84855178662 scopus 로고    scopus 로고
    • Multifunctional proteins revealed by overlapping clustering in protein interaction network
    • Becker, E., Robisson, B., Chapple, C. E., Guénoche, A., and Brun, C. (2012). Multifunctional proteins revealed by overlapping clustering in protein interaction network. Bioinforma. Oxf. Engl. 28, 84-90. doi: 10.1093/bioinformatics/btr621.
    • (2012) Bioinforma. Oxf. Engl , vol.28 , pp. 84-90
    • Becker, E.1    Robisson, B.2    Chapple, C.E.3    Guénoche, A.4    Brun, C.5
  • 6
    • 84940022143 scopus 로고    scopus 로고
    • 'The use of protein-protein interaction networks for genome wide protein function comparisons and predictions,'
    • eds R. M. Kamp, J. J. Calvete, and T. Choli-Papadopoulou (Heidelberg: Springer-Verlag)
    • Brun, C., Baudot, A., Guénoche, A., and Jacq, B. (2004). "The use of protein-protein interaction networks for genome wide protein function comparisons and predictions," in Methods in Proteome and Protein Analysis Principles and Practice, eds R. M. Kamp, J. J. Calvete, and T. Choli-Papadopoulou (Heidelberg: Springer-Verlag), 103-124.
    • (2004) Methods in Proteome and Protein Analysis Principles and Practice , pp. 103-124
    • Brun, C.1    Baudot, A.2    Guénoche, A.3    Jacq, B.4
  • 7
    • 84930966067 scopus 로고    scopus 로고
    • Extreme multifunctional proteins identified from a human protein interaction network
    • Chapple, C. E., Robisson, B., Spinelli, L., Guien, C., Becker, E., and Brun, C. (2015). Extreme multifunctional proteins identified from a human protein interaction network. Nat. Commun. 6:7412. doi: 10.1038/ncomms8412.
    • (2015) Nat. Commun , vol.6 , pp. 7412
    • Chapple, C.E.1    Robisson, B.2    Spinelli, L.3    Guien, C.4    Becker, E.5    Brun, C.6
  • 8
    • 84862324402 scopus 로고    scopus 로고
    • Moonlighting is mainstream: paradigm adjustment required
    • Copley, S. D. (2012). Moonlighting is mainstream: paradigm adjustment required. Bioessays News Rev. Mol. Cell. Dev. Biol. 34, 578-588. doi: 10.1002/bies.201100191.
    • (2012) Bioessays News Rev. Mol. Cell. Dev. Biol , vol.34 , pp. 578-588
    • Copley, S.D.1
  • 9
    • 84875501155 scopus 로고    scopus 로고
    • From ontology to semantic similarity: calculation of ontology-based semantic similarity
    • Gan, M., Dou, X., and Jiang, R. (2013). From ontology to semantic similarity: calculation of ontology-based semantic similarity. Sci. World J. 2013:793091. doi: 10.1155/2013/793091.
    • (2013) Sci. World J , vol.2013
    • Gan, M.1    Dou, X.2    Jiang, R.3
  • 11
    • 0034647970 scopus 로고    scopus 로고
    • Phosphohexose isomerase/autocrine motility factor/neuroleukin/maturation factor is a multifunctional phosphoprotein
    • Haga, A., Niinaka, Y., and Raz, A. (2000). Phosphohexose isomerase/autocrine motility factor/neuroleukin/maturation factor is a multifunctional phosphoprotein. Biochim. Biophys. Acta 1480, 235-244. doi: 10.1016/S0167-4838(00)00075-3.
    • (2000) Biochim. Biophys. Acta , vol.1480 , pp. 235-244
    • Haga, A.1    Niinaka, Y.2    Raz, A.3
  • 12
    • 75949093650 scopus 로고    scopus 로고
    • SimCT: a generic tool to visualize ontology-based relationships for biological objects
    • Herrmann, C., Berard, S., and Tichit, L. (2009). SimCT: a generic tool to visualize ontology-based relationships for biological objects. Bioinformatics 25, 3197-3198. doi: 10.1093/bioinformatics/btp553.
    • (2009) Bioinformatics , vol.25 , pp. 3197-3198
    • Herrmann, C.1    Berard, S.2    Tichit, L.3
  • 13
    • 77954957537 scopus 로고    scopus 로고
    • The moonlighting function of pyruvate carboxylase resides in the non-catalytic end of the TIM barrel
    • Huberts, D. H. E. W., Venselaar, H., Vriend, G., Veenhuis, M., and van der Klei, I. J. (2010). The moonlighting function of pyruvate carboxylase resides in the non-catalytic end of the TIM barrel. Biochim. Biophys. Acta 1803, 1038-1042. doi: 10.1016/j.bbamcr.2010.03.018.
    • (2010) Biochim. Biophys. Acta , vol.1803 , pp. 1038-1042
    • Huberts, D.H.E.W.1    Venselaar, H.2    Vriend, G.3    Veenhuis, M.4    van der Klei, I.J.5
  • 14
    • 0033048066 scopus 로고    scopus 로고
    • Moonlighting proteins
    • Jeffery, C. J. (1999). Moonlighting proteins. Trends Biochem. Sci. 24, 8-11. doi: 10.1016/S0968-0004(98)01335-8.
    • (1999) Trends Biochem. Sci , vol.24 , pp. 8-11
    • Jeffery, C.J.1
  • 15
    • 79959619604 scopus 로고    scopus 로고
    • Proteins with neomorphic moonlighting functions in disease
    • Jeffery, C. J. (2011). Proteins with neomorphic moonlighting functions in disease. Iubmb Life 63, 489-494. doi: 10.1002/iub.504.
    • (2011) Iubmb Life , vol.63 , pp. 489-494
    • Jeffery, C.J.1
  • 16
    • 84911874292 scopus 로고    scopus 로고
    • An introduction to protein moonlighting
    • Jeffery, C. J. (2014). An introduction to protein moonlighting. Biochem. Soc. Trans. 42, 1679-1683. doi: 10.1042/BST20140226.
    • (2014) Biochem. Soc. Trans , vol.42 , pp. 1679-1683
    • Jeffery, C.J.1
  • 17
    • 77955894787 scopus 로고    scopus 로고
    • Multifunctional proteins bridge mitosis with motility and cancer with inflammation and arthritis
    • Jiang, J., Casalegno-Garduno, R., Chen, H., Schmitt, A., Schmitt, M., and Maxwell, C. A. (2010). Multifunctional proteins bridge mitosis with motility and cancer with inflammation and arthritis. Sci. World J. 10, 1244-1257. doi: 10.1100/tsw.2010.141.
    • (2010) Sci. World J , vol.10 , pp. 1244-1257
    • Jiang, J.1    Casalegno-Garduno, R.2    Chen, H.3    Schmitt, A.4    Schmitt, M.5    Maxwell, C.A.6
  • 18
    • 84891749517 scopus 로고    scopus 로고
    • The human phenotype ontology project: linking molecular biology and disease through phenotype data
    • Köhler, S., Doelken, S. C., Mungall, C. J., Bauer, S., Firth, H. V., Bailleul-Forestier, I., et al. (2014). The human phenotype ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42, D966-D974. doi: 10.1093/nar/gkt1026.
    • (2014) Nucleic Acids Res , vol.42 , pp. D966-D974
    • Köhler, S.1    Doelken, S.C.2    Mungall, C.J.3    Bauer, S.4    Firth, H.V.5    Bailleul-Forestier, I.6
  • 19
    • 84866412204 scopus 로고    scopus 로고
    • A case of spinal and bulbar muscular atrophy with high-stage and high-Gleason Score prostate cancer responded to maximal androgen blockade therapy
    • Kosaka, T., Miyajima, A., Kikuchi, E., Takahashi, S., Suzuki, N., and Oya, M. (2012). A case of spinal and bulbar muscular atrophy with high-stage and high-Gleason Score prostate cancer responded to maximal androgen blockade therapy. J. Androl. 33, 563-565. doi: 10.2164/jandrol.111.013698.
    • (2012) J. Androl , vol.33 , pp. 563-565
    • Kosaka, T.1    Miyajima, A.2    Kikuchi, E.3    Takahashi, S.4    Suzuki, N.5    Oya, M.6
  • 20
    • 0031722646 scopus 로고    scopus 로고
    • Molecular basis of neurological dysfunction coupled with haemolytic anaemia in human glucose-6-phosphate isomerase (GPI) deficiency
    • Kugler, W., Breme, K., Laspe, P., Muirhead, H., Davies, C., Winkler, H., et al. (1998). Molecular basis of neurological dysfunction coupled with haemolytic anaemia in human glucose-6-phosphate isomerase (GPI) deficiency. Hum. Genet. 103, 450-454. doi: 10.1007/s004390050849.
    • (1998) Hum. Genet , vol.103 , pp. 450-454
    • Kugler, W.1    Breme, K.2    Laspe, P.3    Muirhead, H.4    Davies, C.5    Winkler, H.6
  • 21
    • 79952697937 scopus 로고    scopus 로고
    • Role of the androgen receptor CAG repeat polymorphism in prostate cancer, and spinal and bulbar muscular atrophy
    • Kumar, R., Atamna, H., Zakharov, M. N., Bhasin, S., Khan, S. H., and Jasuja, R. (2011). Role of the androgen receptor CAG repeat polymorphism in prostate cancer, and spinal and bulbar muscular atrophy. Life Sci. 88, 565-571. doi: 10.1016/j.lfs.2011.01.021.
    • (2011) Life Sci , vol.88 , pp. 565-571
    • Kumar, R.1    Atamna, H.2    Zakharov, M.N.3    Bhasin, S.4    Khan, S.H.5    Jasuja, R.6
  • 23
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: a hub of integrated protein data
    • Magrane, M., and Consortium, U. (2011). UniProt Knowledgebase: a hub of integrated protein data. Database 2011:bar009. doi: 10.1093/database/bar009.
    • (2011) Database , vol.2011
    • Magrane, M.1    Consortium, U.2
  • 24
    • 43149106462 scopus 로고    scopus 로고
    • Cell-surface and mitotic-spindle RHAMM: moonlighting or dual oncogenic functions?
    • Maxwell, C. A., McCarthy, J., and Turley, E. (2008). Cell-surface and mitotic-spindle RHAMM: moonlighting or dual oncogenic functions? J. Cell Sci. 121, 925-932. doi: 10.1242/jcs.022038.
    • (2008) J. Cell Sci , vol.121 , pp. 925-932
    • Maxwell, C.A.1    McCarthy, J.2    Turley, E.3
  • 25
    • 66349110163 scopus 로고    scopus 로고
    • Annotating the human genome with disease ontology
    • Osborne, J. D., Flatow, J., Holko, M., Lin, S. M., Kibbe, W. A., Zhu, L. J., et al. (2009). Annotating the human genome with disease ontology. BMC Genomics 10(Suppl. 1):S6. doi: 10.1186/1471-2164-10-S1-S6.
    • (2009) BMC Genomics , vol.10 , pp. S6
    • Osborne, J.D.1    Flatow, J.2    Holko, M.3    Lin, S.M.4    Kibbe, W.A.5    Zhu, L.J.6
  • 26
    • 64349109427 scopus 로고    scopus 로고
    • The impact of cellular networks on disease comorbidity
    • Park, J., Lee, D.-S., Christakis, N. A., and Barabsi, A.-L. (2009). The impact of cellular networks on disease comorbidity. Mol. Syst. Biol. 5, 262. doi: 10.1038/msb.2009.16.
    • (2009) Mol. Syst. Biol , vol.5 , pp. 262
    • Park, J.1    Lee, D.-S.2    Christakis, N.A.3    Barabsi, A.-L.4
  • 29
    • 79960846244 scopus 로고    scopus 로고
    • Length of the human androgen receptor glutamine tract determines androgen sensitivity in vivo
    • Simanainen, U., Brogley, M., Gao, Y. R., Jimenez, M., Harwood, D. T., Handelsman, D. J., et al. (2011). Length of the human androgen receptor glutamine tract determines androgen sensitivity in vivo. Mol. Cell. Endocrinol. 342, 81-86. doi: 10.1016/j.mce.2011.05.011.
    • (2011) Mol. Cell. Endocrinol , vol.342 , pp. 81-86
    • Simanainen, U.1    Brogley, M.2    Gao, Y.R.3    Jimenez, M.4    Harwood, D.T.5    Handelsman, D.J.6
  • 30
    • 84907033567 scopus 로고    scopus 로고
    • Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
    • Uyar, B., Weatheritt, R. J., Dinkel, H., Davey, N. E., and Gibson, T. J. (2014). Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? Mol. Biosyst. 10, 2626-2642. doi: 10.1039/C4MB00290C.
    • (2014) Mol. Biosyst , vol.10 , pp. 2626-2642
    • Uyar, B.1    Weatheritt, R.J.2    Dinkel, H.3    Davey, N.E.4    Gibson, T.J.5
  • 31
    • 84876158670 scopus 로고    scopus 로고
    • The switches.ELM resource: a compendium of conditional regulatory interaction interfaces
    • van Roey, K., Dinkel, H., Weatheritt, R. J., Gibson, T. J., and Davey, N. E. (2013). The switches.ELM resource: a compendium of conditional regulatory interaction interfaces. Sci. Signal. 6, rs7. doi: 10.1126/scisignal.2003345.
    • (2013) Sci. Signal , vol.6
    • van Roey, K.1    Dinkel, H.2    Weatheritt, R.J.3    Gibson, T.J.4    Davey, N.E.5
  • 32
    • 39149112760 scopus 로고    scopus 로고
    • The functional duality of iron regulatory protein 1
    • Volz, K. (2008). The functional duality of iron regulatory protein 1. Curr. Opin. Struct. Biol. 18, 106-111. doi: 10.1016/j.sbi.2007.12.010.
    • (2008) Curr. Opin. Struct. Biol , vol.18 , pp. 106-111
    • Volz, K.1
  • 33
    • 84928658738 scopus 로고    scopus 로고
    • DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis
    • Yu, G., Wang, L. G., Yan, G. R., and He, Q. Y. (2015). DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis. Bioinformatics 31, 608-609. doi: 10.1093/bioinformatics/btu684.
    • (2015) Bioinformatics , vol.31 , pp. 608-609
    • Yu, G.1    Wang, L.G.2    Yan, G.R.3    He, Q.Y.4
  • 34


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.