-
1
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25, 3389–3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
84860733853
-
Lactobacillus nasuensis sp. Nov, a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus
-
Cai, Y., Pang, H., Kitahara, M. & Ohkuma, M. (2012). Lactobacillus nasuensis sp. Nov, a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus. Int J Syst Evol Microbi 62, 1140–1144
-
(2012)
Int J Syst Evol Microbi
, vol.62
, pp. 1140-1144
-
-
Cai, Y.1
Pang, H.2
Kitahara, M.3
Ohkuma, M.4
-
3
-
-
33646198222
-
Major advances in applied dairy cattle nutrition
-
Eastridge, M. L. (2006). Major advances in applied dairy cattle nutrition. J Dairy Sci 89, 1311–1323
-
(2006)
J Dairy Sci
, vol.89
, pp. 1311-1323
-
-
Eastridge, M.L.1
-
4
-
-
0024358339
-
Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
-
Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224–229
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 224-229
-
-
Ezaki, T.1
Hashimoto, Y.2
Yabuuchi, E.3
-
5
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
6
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
7
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
8
-
-
84863230041
-
Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H., Yi, H., Won, S. & Chun, J. (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716–721
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
Yi, H.10
Won, S.11
Chun, J.12
-
9
-
-
76849097432
-
Lactobacillus similis sp. Nov, isolated from fermented cane molasses
-
Kitahara, M., Sakamoto, M. & Benno, Y. (2010). Lactobacillus similis sp. Nov, isolated from fermented cane molasses. Int J Syst Evol Microbiol 60, 187–190
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 187-190
-
-
Kitahara, M.1
Sakamoto, M.2
Benno, Y.3
-
10
-
-
77956800518
-
Lipid and cell-wall analysis in bacterial systematics
-
Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161–207
-
(1987)
Methods Microbiol
, vol.19
, pp. 161-207
-
-
Komagata, K.1
Suzuki, K.2
-
11
-
-
36448991500
-
CLUSTAL W and CLUSTAL_X version 2.0
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL_X version 2.0 Bioinformatics 23, 2947–2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Authors, O.10
-
12
-
-
0003945563
-
-
2nd edn., Marlow: Chalcombe Publications
-
McDonald, P., Henderson, N. & Heron, S. (1991). The Biochemistry of Silage, 2nd edn., Marlow: Chalcombe Publications.
-
(1991)
The Biochemistry of Silage
-
-
McDonald, P.1
Henderson, N.2
Heron, S.3
-
13
-
-
84878658841
-
Milk production, nutrient digestibility and nitrogen balance in lactating cows fed total mixed ration silages containing steam-flaked brown rice as substitute for steam-flaked corn, and wet food by-products
-
Miyaji, M., Matsuyama, H., Hosoda, K. & Nonaka, K. (2013). Milk production, nutrient digestibility and nitrogen balance in lactating cows fed total mixed ration silages containing steam-flaked brown rice as substitute for steam-flaked corn, and wet food by-products. Anim Sci J 84, 483–488
-
(2013)
Anim Sci J
, vol.84
, pp. 483-488
-
-
Miyaji, M.1
Matsuyama, H.2
Hosoda, K.3
Nonaka, K.4
-
14
-
-
84892678915
-
Effect of substituting brown rice for corn on lactation and digestion in dairy cows fed diets with a high proportion of grain
-
Miyaji, M., Matsuyama, H. & Hosoda, K. (2014). Effect of substituting brown rice for corn on lactation and digestion in dairy cows fed diets with a high proportion of grain. J Dairy Sci 97, 952–960
-
(2014)
J Dairy Sci
, vol.97
, pp. 952-960
-
-
Miyaji, M.1
Matsuyama, H.2
Hosoda, K.3
-
15
-
-
37549058842
-
Identification of lactobacilli by pheS and rpoA gene sequence analyses
-
Naser, S. M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M. & Swings, J. (2007). Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57, 2777–2789
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2777-2789
-
-
Naser, S.M.1
Dawyndt, P.2
Hoste, B.3
Gevers, D.4
Vandemeulebroecke, K.5
Cleenwerck, I.6
Vancanneyt, M.7
Swings, J.8
-
16
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
17
-
-
0035989525
-
Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig, gen. Nov, comb. Nov
-
Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I. & Benno, Y. (2002). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. Nov, comb. nov. Int J Syst Evol Microbiol 52, 841–849
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 841-849
-
-
Sakamoto, M.1
Suzuki, M.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
-
18
-
-
0030071653
-
Agromyces mediolanus sp. Nov, nom. Rev, comb. Nov, a species for ‘‘Corynebacterium mediolanum’’ Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4- diaminobutyric acid in the cell wall peptidoglycan
-
Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T. & Komagata, K. (1996). Agromyces mediolanus sp. Nov, nom. rev., comb. Nov, a species for ‘‘Corynebacterium mediolanum’’ Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4- diaminobutyric acid in the cell wall peptidoglycan. Int J Syst Bacteriol 46, 88–93
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 88-93
-
-
Suzuki, K.1
Sasaki, J.2
Uramoto, M.3
Nakase, T.4
Komagata, K.5
-
19
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731–2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
20
-
-
76849088617
-
Notes on the characterization of prokaryote strains for taxonomic purposes
-
Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwig, W. & Kä mpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249–266
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 249-266
-
-
Tindall, B.J.1
Rosselló-Móra, R.2
Busse, H.J.3
Ludwig, W.4
Kä Mpfer, P.5
-
21
-
-
84857192024
-
Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage
-
Tohno, M., Kobayashi, H., Nomura, M., Kitahara, M., Ohkuma, M., Uegaki, R. & Cai, Y. (2012a). Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. Anim Sci J 83, 111–120
-
(2012)
Anim Sci J
, vol.83
, pp. 111-120
-
-
Tohno, M.1
Kobayashi, H.2
Nomura, M.3
Kitahara, M.4
Ohkuma, M.5
Uegaki, R.6
Cai, Y.7
-
22
-
-
84860008733
-
Identification and characterization of lactic acid bacteria isolated from mixed pasture of timothy and orchardgrass, and its badly preserved silage
-
Tohno, M., Kobayashi, H., Nomura, M., Uegaki, R. & Cai, Y. (2012b). Identification and characterization of lactic acid bacteria isolated from mixed pasture of timothy and orchardgrass, and its badly preserved silage. Anim Sci J 83, 318–330
-
(2012)
Anim Sci J
, vol.83
, pp. 318-330
-
-
Tohno, M.1
Kobayashi, H.2
Nomura, M.3
Uegaki, R.4
Cai, Y.5
-
23
-
-
84876095809
-
Weissella oryzae sp. Nov, isolated from fermented rice grains
-
Tohno, M., Kitahara, M., Inoue, H., Uegaki, R., Irisawa, T., Ohkuma, M. & Tajima, K. (2013a). Weissella oryzae sp. Nov, isolated from fermented rice grains. Int J Syst Evol Microbiol 63, 1417–1420
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 1417-1420
-
-
Tohno, M.1
Kitahara, M.2
Inoue, H.3
Uegaki, R.4
Irisawa, T.5
Ohkuma, M.6
Tajima, K.7
-
24
-
-
84885221651
-
Description of Lactobacillus iwatensis sp. Nov, isolated from orchardgrass (Dactylis glomerata L.) silage, and Lactobacillus backii sp. Nov
-
Tohno, M., Kitahara, M., Irisawa, T., Masuda, T., Uegaki, R., Ohkuma, M. & Tajima, K. (2013b). Description of Lactobacillus iwatensis sp. Nov, isolated from orchardgrass (Dactylis glomerata L.) silage, and Lactobacillus backii sp. nov. Int J Syst Evol Microbiol 63, 3854–3860
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 3854-3860
-
-
Tohno, M.1
Kitahara, M.2
Irisawa, T.3
Masuda, T.4
Uegaki, R.5
Ohkuma, M.6
Tajima, K.7
-
25
-
-
84879811286
-
Lactobacillus hokkaidonensis sp. Nov, isolated from subarctic timothy grass (Phleum pratense L.) silage
-
Tohno, M., Kitahara, M., Uegaki, R., Irisawa, T., Ohkuma, M. & Tajima, K. (2013c). Lactobacillus hokkaidonensis sp. Nov, isolated from subarctic timothy grass (Phleum pratense L.) silage. Int J Syst Evol Microbiol 63, 2526–2531
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 2526-2531
-
-
Tohno, M.1
Kitahara, M.2
Uegaki, R.3
Irisawa, T.4
Ohkuma, M.5
Tajima, K.6
-
26
-
-
84897938795
-
Aerococcus vaginalis sp. Nov, isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola
-
Tohno, M., Kitahara, M., Matsuyama, S., Kimura, K., Ohkuma, M. & Tajima, K. (2014). Aerococcus vaginalis sp. Nov, isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola. Int J Syst Evol Microbiol 64, 1229–1236
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 1229-1236
-
-
Tohno, M.1
Kitahara, M.2
Matsuyama, S.3
Kimura, K.4
Ohkuma, M.5
Tajima, K.6
-
27
-
-
0000770675
-
International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463–464.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.8
Murray, R.9
Authors, O.10
|