-
1
-
-
67849128457
-
Halogen bonds as orthogonal molecular interactions to hydrogen bonds
-
COI: 1:CAS:528:DC%2BD1MXktlSlsb4%3D
-
Voth AR, Khuu P, Oishi K, Ho PS (2009) Halogen bonds as orthogonal molecular interactions to hydrogen bonds. Nat Chem 1:74–79
-
(2009)
Nat Chem
, vol.1
, pp. 74-79
-
-
Voth, A.R.1
Khuu, P.2
Oishi, K.3
Ho, P.S.4
-
2
-
-
34547508202
-
Directing macromolecular conformation through halogen bonds
-
COI: 1:CAS:528:DC%2BD2sXks1artbk%3D
-
Voth AR, Hays FA, Ho PS (2007) Directing macromolecular conformation through halogen bonds. Proc Natl Acad Sci U S A 104:6188–6193
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 6188-6193
-
-
Voth, A.R.1
Hays, F.A.2
Ho, P.S.3
-
4
-
-
72149112462
-
Halogen bonding in metal-organic-supramolecular networks
-
COI: 1:CAS:528:DC%2BD1MXhs1SlsLnJ
-
Bertani R, Sgarbossa P, Venzo A, Lelj F, Amati M, Resnati G, Pilati T, Metrangolo P, Terraneo G (2010) Halogen bonding in metal-organic-supramolecular networks. Coord Chem Rev 254:677–695
-
(2010)
Coord Chem Rev
, vol.254
, pp. 677-695
-
-
Bertani, R.1
Sgarbossa, P.2
Venzo, A.3
Lelj, F.4
Amati, M.5
Resnati, G.6
Pilati, T.7
Metrangolo, P.8
Terraneo, G.9
-
5
-
-
77955809684
-
Halogen bonding: a general route in anion recognition and coordination
-
COI: 1:CAS:528:DC%2BC3cXhtFKksb%2FP
-
Cavallo G, Metrangolo P, Pilati T, Resnati G, Sansotera M, Terraneo G (2010) Halogen bonding: a general route in anion recognition and coordination. Chem Soc Rev 39:3772–3783
-
(2010)
Chem Soc Rev
, vol.39
, pp. 3772-3783
-
-
Cavallo, G.1
Metrangolo, P.2
Pilati, T.3
Resnati, G.4
Sansotera, M.5
Terraneo, G.6
-
6
-
-
84863714274
-
Interplay between halogen bonds and pi-pi stacking interactions: CSD search and theoretical study
-
COI: 1:CAS:528:DC%2BC38XptlWgur4%3D
-
Li HY, Lu YX, Liu YT, Zhu X, Liu HL, Zhu WL (2012) Interplay between halogen bonds and pi-pi stacking interactions: CSD search and theoretical study. Phys Chem Chem Phys 14:9948–9955
-
(2012)
Phys Chem Chem Phys
, vol.14
, pp. 9948-9955
-
-
Li, H.Y.1
Lu, Y.X.2
Liu, Y.T.3
Zhu, X.4
Liu, H.L.5
Zhu, W.L.6
-
7
-
-
84874421730
-
Noncovalent interactions in halogenated ionic liquids: theoretical study and crystallographic implications
-
COI: 1:CAS:528:DC%2BC3sXjtF2gt7o%3D
-
Li HY, Lu YX, Wu WH, Liu YT, Peng CJ, Liu HL, Zhu WL (2013) Noncovalent interactions in halogenated ionic liquids: theoretical study and crystallographic implications. Phys Chem Chem Phys 15:4405–4414
-
(2013)
Phys Chem Chem Phys
, vol.15
, pp. 4405-4414
-
-
Li, H.Y.1
Lu, Y.X.2
Wu, W.H.3
Liu, Y.T.4
Peng, C.J.5
Liu, H.L.6
Zhu, W.L.7
-
8
-
-
84860380236
-
Halogen bonding for rational drug design and new drug discovery
-
COI: 1:CAS:528:DC%2BC38XmtlCqsrc%3D
-
Lu Y, Liu Y, Xu Z, Li H, Liu H, Zhu W (2012) Halogen bonding for rational drug design and new drug discovery. Expert Opin Drug Discov 7:375–383
-
(2012)
Expert Opin Drug Discov
, vol.7
, pp. 375-383
-
-
Lu, Y.1
Liu, Y.2
Xu, Z.3
Li, H.4
Liu, H.5
Zhu, W.6
-
9
-
-
84863358395
-
Energetic effects between halogen bonds and anion-pi or lone pair-pi interactions: a theoretical study
-
COI: 1:CAS:528:DC%2BC38XislSrur4%3D
-
Lu YX, Liu YT, Li HY, Zhu X, Liu HL, Zhu WL (2012) Energetic effects between halogen bonds and anion-pi or lone pair-pi interactions: a theoretical study. J Phys Chem A 116:2591–2597
-
(2012)
J Phys Chem A
, vol.116
, pp. 2591-2597
-
-
Lu, Y.X.1
Liu, Y.T.2
Li, H.Y.3
Zhu, X.4
Liu, H.L.5
Zhu, W.L.6
-
10
-
-
84861634050
-
Mutual influence between halogen bonds and cation-p interactions: a theoretical study
-
COI: 1:CAS:528:DC%2BC38Xjslelsbw%3D
-
Lu YX, Liu YT, Li HY, Zhu X, Liu HL, Zhu WL (2012) Mutual influence between halogen bonds and cation-p interactions: a theoretical study. ChemPhysChem 13:2154–2161
-
(2012)
ChemPhysChem
, vol.13
, pp. 2154-2161
-
-
Lu, Y.X.1
Liu, Y.T.2
Li, H.Y.3
Zhu, X.4
Liu, H.L.5
Zhu, W.L.6
-
11
-
-
65649095907
-
Halogen bonding-a novel interaction for rational drug design?
-
COI: 1:CAS:528:DC%2BD1MXkt1Omu7Y%3D
-
Lu YX, Shi T, Wang Y, Yang HY, Yan XH, Luo XM, Jiang HL, Zhu WL (2009) Halogen bonding-a novel interaction for rational drug design? J Med Chem 52:2854–2862
-
(2009)
J Med Chem
, vol.52
, pp. 2854-2862
-
-
Lu, Y.X.1
Shi, T.2
Wang, Y.3
Yang, H.Y.4
Yan, X.H.5
Luo, X.M.6
Jiang, H.L.7
Zhu, W.L.8
-
12
-
-
77951793408
-
Nonbonding interactions of organic halogens in biological systems: implications for drug discovery and biomolecular design
-
COI: 1:CAS:528:DC%2BC3cXltlWhsLc%3D
-
Lu YX, Wang Y, Zhu WL (2010) Nonbonding interactions of organic halogens in biological systems: implications for drug discovery and biomolecular design. Phys Chem Chem Phys 12:4543–4551
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 4543-4551
-
-
Lu, Y.X.1
Wang, Y.2
Zhu, W.L.3
-
13
-
-
20444479110
-
Halogen bonding based recognition processes: a world parallel to hydrogen bonding
-
COI: 1:CAS:528:DC%2BD2MXitlSitbY%3D
-
Metrangolo P, Neukirch H, Pilati T, Resnati G (2005) Halogen bonding based recognition processes: a world parallel to hydrogen bonding. Acc Chem Res 38:386–395
-
(2005)
Acc Chem Res
, vol.38
, pp. 386-395
-
-
Metrangolo, P.1
Neukirch, H.2
Pilati, T.3
Resnati, G.4
-
14
-
-
49649098999
-
Chemistry halogen versus hydrogen
-
COI: 1:CAS:528:DC%2BD1cXhtVamsL7J
-
Metrangolo P, Resnati G (2008) Chemistry halogen versus hydrogen. Science 321:918–919
-
(2008)
Science
, vol.321
, pp. 918-919
-
-
Metrangolo, P.1
Resnati, G.2
-
15
-
-
79954586104
-
Halogen bonding in halocarbon-protein complexes: a structural survey
-
COI: 1:CAS:528:DC%2BC3MXkvVWju7g%3D
-
Parisini E, Metrangolo P, Pilati T, Resnati G, Terraneo G (2011) Halogen bonding in halocarbon-protein complexes: a structural survey. Chem Soc Rev 40:2267–2278
-
(2011)
Chem Soc Rev
, vol.40
, pp. 2267-2278
-
-
Parisini, E.1
Metrangolo, P.2
Pilati, T.3
Resnati, G.4
Terraneo, G.5
-
16
-
-
77954598483
-
The halogen bond: an interim perspective
-
COI: 1:CAS:528:DC%2BC3cXosFaqsbs%3D
-
Legon AC (2010) The halogen bond: an interim perspective. Phys Chem Chem Phys 12:7736–7747
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 7736-7747
-
-
Legon, A.C.1
-
17
-
-
79961216539
-
Utilization of halogen bond in lead optimization: a case study of rational design of potent phosphodiesterase type 5 (PDE5) inhibitors
-
COI: 1:CAS:528:DC%2BC3MXovVegtLg%3D
-
Xu Z, Liu Z, Chen T, Wang Z, Tian G, Shi J, Wang X, Lu Y, Yan X, Wang G, Jiang H, Chen K, Wang S, Xu Y, Shen J, Zhu W (2011) Utilization of halogen bond in lead optimization: a case study of rational design of potent phosphodiesterase type 5 (PDE5) inhibitors. J Med Chem 54:5607–5611
-
(2011)
J Med Chem
, vol.54
, pp. 5607-5611
-
-
Xu, Z.1
Liu, Z.2
Chen, T.3
Wang, Z.4
Tian, G.5
Shi, J.6
Wang, X.7
Lu, Y.8
Yan, X.9
Wang, G.10
Jiang, H.11
Chen, K.12
Wang, S.13
Xu, Y.14
Shen, J.15
Zhu, W.16
-
18
-
-
78650168509
-
Directional weak intermolecular interactions: sigma-hole bonding
-
COI: 1:CAS:528:DC%2BC3cXhsFaqsbnN
-
Murray JS, Riley KE, Politzer P, Clark T (2010) Directional weak intermolecular interactions: sigma-hole bonding. Aust J Chem 63:1598–1607
-
(2010)
Aust J Chem
, vol.63
, pp. 1598-1607
-
-
Murray, J.S.1
Riley, K.E.2
Politzer, P.3
Clark, T.4
-
19
-
-
67349235534
-
Expansion of the sigma-hole concept
-
COI: 1:CAS:528:DC%2BC3cXlslGis7o%3D
-
Murray JS, Lane P, Politzer P (2009) Expansion of the sigma-hole concept. J Mol Model 15:723–729
-
(2009)
J Mol Model
, vol.15
, pp. 723-729
-
-
Murray, J.S.1
Lane, P.2
Politzer, P.3
-
20
-
-
34347385022
-
Halogen bonding and the design of new materials: organic bromides, chlorides and perhaps even fluorides as donors
-
COI: 1:CAS:528:DC%2BD2sXhtlequr%2FJ
-
Politzer P, Murray JS, Concha MC (2007) Halogen bonding and the design of new materials: organic bromides, chlorides and perhaps even fluorides as donors. J Mol Model 13:643–650
-
(2007)
J Mol Model
, vol.13
, pp. 643-650
-
-
Politzer, P.1
Murray, J.S.2
Concha, M.C.3
-
21
-
-
77954593406
-
Halogen bonding: an electrostatically-driven highly directional noncovalent interaction
-
COI: 1:CAS:528:DC%2BC3cXosFaqtrg%3D
-
Politzer P, Murray JS, Clark T (2010) Halogen bonding: an electrostatically-driven highly directional noncovalent interaction. Phys Chem Chem Phys 12:7748–7757
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 7748-7757
-
-
Politzer, P.1
Murray, J.S.2
Clark, T.3
-
22
-
-
33846687108
-
An overview of halogen bonding
-
COI: 1:CAS:528:DC%2BD2sXisFantL0%3D
-
Politzer P, Lane P, Concha MC, Ma Y, Murray JS (2007) An overview of halogen bonding. J Mol Model 13:305–311
-
(2007)
J Mol Model
, vol.13
, pp. 305-311
-
-
Politzer, P.1
Lane, P.2
Concha, M.C.3
Ma, Y.4
Murray, J.S.5
-
23
-
-
77953631827
-
A medicinal chemist’s guide to molecular interactions
-
COI: 1:CAS:528:DC%2BC3cXjvFKjtbs%3D
-
Bissantz C, Kuhn B, Stahl M (2010) A medicinal chemist’s guide to molecular interactions. J Med Chem 53:5061–5084
-
(2010)
J Med Chem
, vol.53
, pp. 5061-5084
-
-
Bissantz, C.1
Kuhn, B.2
Stahl, M.3
-
24
-
-
0035907730
-
Halogen bonding: a paradigm in supramolecular chemistry
-
COI: 1:CAS:528:DC%2BD3MXkslWnt70%3D
-
Metrangolo P, Resnati G (2001) Halogen bonding: a paradigm in supramolecular chemistry. Chem-Eur J 7:2511–2519
-
(2001)
Chem-Eur J
, vol.7
, pp. 2511-2519
-
-
Metrangolo, P.1
Resnati, G.2
-
25
-
-
72749095000
-
Recent advances in crystal engineering
-
COI: 1:CAS:528:DC%2BC3cXjs1OhtQ%3D%3D
-
Aakeroy CB, Champness NR, Janiak C (2010) Recent advances in crystal engineering. Crysteng comm 12:22–43
-
(2010)
Crysteng comm
, vol.12
, pp. 22-43
-
-
Aakeroy, C.B.1
Champness, N.R.2
Janiak, C.3
-
26
-
-
61649110742
-
Supramolecular synthesis based on a combination of hydrogen and halogen bonds
-
COI: 1:CAS:528:DC%2BD1cXhsVequ7nJ
-
Aakeroy CB, Schultheiss NC, Rajbanshi A, Desper J, Moore C (2009) Supramolecular synthesis based on a combination of hydrogen and halogen bonds. Cryst Growth Des 9:432–441
-
(2009)
Cryst Growth Des
, vol.9
, pp. 432-441
-
-
Aakeroy, C.B.1
Schultheiss, N.C.2
Rajbanshi, A.3
Desper, J.4
Moore, C.5
-
28
-
-
9344246885
-
Growth factors essential for self-renewal and expansion of mouse spermatogonial stem cells
-
COI: 1:CAS:528:DC%2BD2cXhtVOisbvP
-
Kubota H, Avarbock MR, Brinster RL (2004) Growth factors essential for self-renewal and expansion of mouse spermatogonial stem cells. Proc Natl Acad Sci U S A 101:16489–16494
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 16489-16494
-
-
Kubota, H.1
Avarbock, M.R.2
Brinster, R.L.3
-
29
-
-
77950789591
-
Halogen atoms in the modern medicinal chemistry: hints for the drug design
-
COI: 1:CAS:528:DC%2BC3cXkt1emsro%3D
-
Hernandes MZ, Cavalcanti SM, Moreira DR, de Azevedo Junior WF, Leite AC (2010) Halogen atoms in the modern medicinal chemistry: hints for the drug design. Curr Drug Targets 11:303–314
-
(2010)
Curr Drug Targets
, vol.11
, pp. 303-314
-
-
Hernandes, M.Z.1
Cavalcanti, S.M.2
Moreira, D.R.3
de Azevedo Junior, W.F.4
Leite, A.C.5
-
30
-
-
0034903745
-
Structure of rat transthyretin (rTTR) complex with thyroxine at 2.5 angstrom resolution: first non-biased insight into thyroxine binding reveals different hormone orientation in two binding sites
-
COI: 1:STN:280:DC%2BD3MvitVWksQ%3D%3D
-
Wojtczak A, Cody V, Luft JR, Pangborn W (2001) Structure of rat transthyretin (rTTR) complex with thyroxine at 2.5 angstrom resolution: first non-biased insight into thyroxine binding reveals different hormone orientation in two binding sites. Acta Crystallogr D 57:1061–1070
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1061-1070
-
-
Wojtczak, A.1
Cody, V.2
Luft, J.R.3
Pangborn, W.4
-
31
-
-
79960031261
-
Anion receptors composed of hydrogen- and halogen-bond donor groups: modulating selectivity with combinations of distinct noncovalent interactions
-
COI: 1:CAS:528:DC%2BC3MXntl2qu7c%3D
-
Chudzinski MG, McClary CA, Taylor MS (2011) Anion receptors composed of hydrogen- and halogen-bond donor groups: modulating selectivity with combinations of distinct noncovalent interactions. J Am Chem Soc 133:10559–10567
-
(2011)
J Am Chem Soc
, vol.133
, pp. 10559-10567
-
-
Chudzinski, M.G.1
McClary, C.A.2
Taylor, M.S.3
-
32
-
-
72949118944
-
Role of halogen bonds in thyroid hormone receptor selectivity: pharmacophore-based 3D-QSSR studies
-
COI: 1:CAS:528:DC%2BD1MXhtlalurnF
-
Valadares NF, Salum LB, Polikarpov I, Andricopulo AD, Garratt RC (2009) Role of halogen bonds in thyroid hormone receptor selectivity: pharmacophore-based 3D-QSSR studies. J Chem Inf Model 49:2606–2616
-
(2009)
J Chem Inf Model
, vol.49
, pp. 2606-2616
-
-
Valadares, N.F.1
Salum, L.B.2
Polikarpov, I.3
Andricopulo, A.D.4
Garratt, R.C.5
-
33
-
-
77956968392
-
Halogen bonds form the basis for selective P-TEFb inhibition by DRB
-
COI: 1:CAS:528:DC%2BC3cXhtFyit7fN
-
Baumli S, Endicott JA, Johnson LN (2010) Halogen bonds form the basis for selective P-TEFb inhibition by DRB. Chem Biol 17:931–936
-
(2010)
Chem Biol
, vol.17
, pp. 931-936
-
-
Baumli, S.1
Endicott, J.A.2
Johnson, L.N.3
-
34
-
-
27744504303
-
Inspecting the structure-activity relationship of protein kinase CK2 inhibitors derived from tetrabromo-benzimidazole
-
COI: 1:CAS:528:DC%2BD2MXht1aqu73P
-
Battistutta R, Mazzorana M, Sarno S, Kazimierczuk Z, Zanotti G, Pinna LA (2005) Inspecting the structure-activity relationship of protein kinase CK2 inhibitors derived from tetrabromo-benzimidazole. Chem Biol 12:1211–1219
-
(2005)
Chem Biol
, vol.12
, pp. 1211-1219
-
-
Battistutta, R.1
Mazzorana, M.2
Sarno, S.3
Kazimierczuk, Z.4
Zanotti, G.5
Pinna, L.A.6
-
35
-
-
79251579303
-
Specific CLK Inhibitors from a novel chemotype for regulation of alternative splicing
-
COI: 1:CAS:528:DC%2BC3MXhtlarsLw%3D
-
Fedorov O, Huber K, Eisenreich A, Filippakopoulos P, King O, Bullock AN, Szklarczyk D, Jensen LJ, Fabbro D, Trappe J, Rauch U, Bracher F, Knapp S (2011) Specific CLK Inhibitors from a novel chemotype for regulation of alternative splicing. Chem Biol 18:67–76
-
(2011)
Chem Biol
, vol.18
, pp. 67-76
-
-
Fedorov, O.1
Huber, K.2
Eisenreich, A.3
Filippakopoulos, P.4
King, O.5
Bullock, A.N.6
Szklarczyk, D.7
Jensen, L.J.8
Fabbro, D.9
Trappe, J.10
Rauch, U.11
Bracher, F.12
Knapp, S.13
-
36
-
-
70349786321
-
Evidence for C-Cl/C-Br center dot center dot center dot pi interactions as an important contribution to protein-ligand binding affinity
-
COI: 1:CAS:528:DC%2BD1MXkvVens7o%3D
-
Matter H, Nazare M, Gussregen S, Will DW, Schreuder H, Bauer A, Urmann M, Ritter K, Wagner M, Wehner V (2009) Evidence for C-Cl/C-Br center dot center dot center dot pi interactions as an important contribution to protein-ligand binding affinity. Angew Chem Int Ed 48:2911–2916
-
(2009)
Angew Chem Int Ed
, vol.48
, pp. 2911-2916
-
-
Matter, H.1
Nazare, M.2
Gussregen, S.3
Will, D.W.4
Schreuder, H.5
Bauer, A.6
Urmann, M.7
Ritter, K.8
Wagner, M.9
Wehner, V.10
-
37
-
-
78650706711
-
Systematic investigation of halogen bonding in protein-ligand interactions
-
COI: 1:CAS:528:DC%2BC3cXhs1alu73N
-
Hardegger LA, Kuhn B, Spinnler B, Anselm L, Ecabert R, Stihle M, Gsell B, Thoma R, Diez J, Benz J, Plancher JM, Hartmann G, Banner DW, Haap W, Diederich F (2011) Systematic investigation of halogen bonding in protein-ligand interactions. Angew Chem Int Ed 50:314–318
-
(2011)
Angew Chem Int Ed
, vol.50
, pp. 314-318
-
-
Hardegger, L.A.1
Kuhn, B.2
Spinnler, B.3
Anselm, L.4
Ecabert, R.5
Stihle, M.6
Gsell, B.7
Thoma, R.8
Diez, J.9
Benz, J.10
Plancher, J.M.11
Hartmann, G.12
Banner, D.W.13
Haap, W.14
Diederich, F.15
-
38
-
-
80055006729
-
Halogen bonding at the active sites of human cathepsin L and MEK1 kinase: efficient interactions in different environments
-
COI: 1:CAS:528:DC%2BC3MXhtFajtr7E
-
Hardegger LA, Kuhn B, Spinnler B, Anselm L, Ecabert R, Stihle M, Gsell B, Thoma R, Diez J, Benz J, Plancher JM, Hartmann G, Isshiki Y, Morikami K, Shimma N, Haap W, Banner DW, Diederich F (2011) Halogen bonding at the active sites of human cathepsin L and MEK1 kinase: efficient interactions in different environments. Chemmedchem 6:2048–2054
-
(2011)
Chemmedchem
, vol.6
, pp. 2048-2054
-
-
Hardegger, L.A.1
Kuhn, B.2
Spinnler, B.3
Anselm, L.4
Ecabert, R.5
Stihle, M.6
Gsell, B.7
Thoma, R.8
Diez, J.9
Benz, J.10
Plancher, J.M.11
Hartmann, G.12
Isshiki, Y.13
Morikami, K.14
Shimma, N.15
Haap, W.16
Banner, D.W.17
Diederich, F.18
-
39
-
-
0344927100
-
3-Iodo-4-phenoxypyridinones (IOPY’s), a new family of highly potent non-nucleoside inhibitors of HIV-1 reverse transcriptase
-
COI: 1:CAS:528:DC%2BD3sXpt1yrtL4%3D
-
Benjahad A, Guillemont J, Andries K, Nguyen CH, Grierson DS (2003) 3-Iodo-4-phenoxypyridinones (IOPY’s), a new family of highly potent non-nucleoside inhibitors of HIV-1 reverse transcriptase. Bioorg Med Chem Lett 13:4309–4312
-
(2003)
Bioorg Med Chem Lett
, vol.13
, pp. 4309-4312
-
-
Benjahad, A.1
Guillemont, J.2
Andries, K.3
Nguyen, C.H.4
Grierson, D.S.5
-
40
-
-
28144445329
-
Crystal structures for HIV-1 reverse transcriptase in complexes with three pyridinone derivatives: a new class of non-nucleoside inhibitors effective against a broad range of drug-resistant strains
-
COI: 1:CAS:528:DC%2BD2MXhtFKlur3J
-
Himmel DM, Das K, Clark AD, Hughes SH, Benjahad A, Oumouch S, Guillemont J, Coupa S, Poncelet A, Csoka I, Meyer C, Andries K, Nguyen CH, Grierson DS, Arnold E (2005) Crystal structures for HIV-1 reverse transcriptase in complexes with three pyridinone derivatives: a new class of non-nucleoside inhibitors effective against a broad range of drug-resistant strains. J Med Chem 48:7582–7591
-
(2005)
J Med Chem
, vol.48
, pp. 7582-7591
-
-
Himmel, D.M.1
Das, K.2
Clark, A.D.3
Hughes, S.H.4
Benjahad, A.5
Oumouch, S.6
Guillemont, J.7
Coupa, S.8
Poncelet, A.9
Csoka, I.10
Meyer, C.11
Andries, K.12
Nguyen, C.H.13
Grierson, D.S.14
Arnold, E.15
-
41
-
-
79251562528
-
Kinase inhibition that hinges on halogen bonds
-
COI: 1:CAS:528:DC%2BC3MXhtlarsrc%3D
-
Grant SK, Lunney EA (2011) Kinase inhibition that hinges on halogen bonds. Chem Biol 18:3–4
-
(2011)
Chem Biol
, vol.18
, pp. 3-4
-
-
Grant, S.K.1
Lunney, E.A.2
-
42
-
-
79959921557
-
Semiempirical quantum mechanical method PM6-DH2X describes the geometry and energetics of CK2-inhibitor complexes involving halogen bonds well, while the empirical potential fails
-
COI: 1:CAS:528:DC%2BC3MXnsFSqsb8%3D
-
Dobes P, Rezac J, Fanfrlik J, Otyepka M, Hobza P (2011) Semiempirical quantum mechanical method PM6-DH2X describes the geometry and energetics of CK2-inhibitor complexes involving halogen bonds well, while the empirical potential fails. J Phys Chem B 115:8581–8589
-
(2011)
J Phys Chem B
, vol.115
, pp. 8581-8589
-
-
Dobes, P.1
Rezac, J.2
Fanfrlik, J.3
Otyepka, M.4
Hobza, P.5
-
43
-
-
84858957245
-
AMBER empirical potential describes the geometry and energy of noncovalent halogen interactions better than advanced semiempirical quantum mechanical method PM6-DH2X
-
COI: 1:CAS:528:DC%2BC38Xjt12lurw%3D
-
Ibrahim MA (2012) AMBER empirical potential describes the geometry and energy of noncovalent halogen interactions better than advanced semiempirical quantum mechanical method PM6-DH2X. J Phys Chem B 116:3659–3669
-
(2012)
J Phys Chem B
, vol.116
, pp. 3659-3669
-
-
Ibrahim, M.A.1
-
44
-
-
84870547591
-
Molecular mechanical perspective on halogen bonding
-
COI: 1:CAS:528:DC%2BC38XhsV2kurrN
-
Ibrahim MAA (2012) Molecular mechanical perspective on halogen bonding. J Mol Model 18:4625–4638
-
(2012)
J Mol Model
, vol.18
, pp. 4625-4638
-
-
Ibrahim, M.A.A.1
-
45
-
-
79959739959
-
Molecular mechanical study of halogen bonding in drug discovery
-
COI: 1:CAS:528:DC%2BC3MXnvFalsbg%3D
-
Ibrahim MAA (2011) Molecular mechanical study of halogen bonding in drug discovery. J Comput Chem 32:2564–2574
-
(2011)
J Comput Chem
, vol.32
, pp. 2564-2574
-
-
Ibrahim, M.A.A.1
-
46
-
-
84859583695
-
On extension of the current biomolecular empirical force field for the description of halogen bonds
-
COI: 1:CAS:528:DC%2BC38XjsFegsbs%3D
-
Kolar M, Hobza P (2012) On extension of the current biomolecular empirical force field for the description of halogen bonds. J Chem Theory Comput 8:1325–1333
-
(2012)
J Chem Theory Comput
, vol.8
, pp. 1325-1333
-
-
Kolar, M.1
Hobza, P.2
-
47
-
-
80054898012
-
Performance assessment of semiempirical molecular orbital methods in describing halogen bonding: quantum mechanical and quantum mechanical/molecular mechanical-molecular dynamics study
-
COI: 1:CAS:528:DC%2BC3MXht1ait7vJ
-
Ibrahim MAA (2011) Performance assessment of semiempirical molecular orbital methods in describing halogen bonding: quantum mechanical and quantum mechanical/molecular mechanical-molecular dynamics study. J Chem Inf Model 51:2549–2559
-
(2011)
J Chem Inf Model
, vol.51
, pp. 2549-2559
-
-
Ibrahim, M.A.A.1
-
48
-
-
84866682261
-
Treatment of halogen bonding in the OPLS-AA force field: application to potent anti-HIV agents
-
COI: 1:CAS:528:DC%2BC38XkvFOntbs%3D
-
Jorgensen WL, Schyman P (2012) Treatment of halogen bonding in the OPLS-AA force field: application to potent anti-HIV agents. J Chem Theory Comput 8:3895–3901
-
(2012)
J Chem Theory Comput
, vol.8
, pp. 3895-3901
-
-
Jorgensen, W.L.1
Schyman, P.2
-
49
-
-
84872057647
-
Plugging the explicit sigma-holes in molecular docking
-
COI: 1:CAS:528:DC%2BC3sXjtlCksA%3D%3D
-
Kolar M, Hobza P, Bronowska AK (2013) Plugging the explicit sigma-holes in molecular docking. Chem Commun 49:981–983
-
(2013)
Chem Commun
, vol.49
, pp. 981-983
-
-
Kolar, M.1
Hobza, P.2
Bronowska, A.K.3
-
50
-
-
84863710158
-
Scalable anisotroplic shape and electrostatic models for biological bromine halogen bonds
-
COI: 1:CAS:528:DC%2BC38Xns1eksrk%3D
-
Carter M, Rappe AK, Ho PS (2012) Scalable anisotroplic shape and electrostatic models for biological bromine halogen bonds. J Chem Theory Comput 8:2461–2473
-
(2012)
J Chem Theory Comput
, vol.8
, pp. 2461-2473
-
-
Carter, M.1
Rappe, A.K.2
Ho, P.S.3
-
51
-
-
2442480826
-
Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model
-
COI: 1:CAS:528:DC%2BD2cXjvFemtL8%3D
-
Lee MC, Duan Y (2004) Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model. Proteins 55:620–634
-
(2004)
Proteins
, vol.55
, pp. 620-634
-
-
Lee, M.C.1
Duan, Y.2
-
52
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
COI: 1:CAS:528:DyaL38XmtFajsbw%3D
-
Kuntz ID, Blaney JM, Oatley SJ, Langridge R, Ferrin TE (1982) A geometric approach to macromolecule-ligand interactions. J Mol Biol 161:269–288
-
(1982)
J Mol Biol
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
53
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
COI: 1:CAS:528:DyaK2sXis1KntLo%3D
-
Jones G, Willett P, Glen RC, Leach AR, Taylor R (1997) Development and validation of a genetic algorithm for flexible docking. J Mol Biol 267:727–748
-
(1997)
J Mol Biol
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
54
-
-
11644261806
-
Automated docking using a lamarckian genetic algorithm and an empirical binding free energy function
-
COI: 1:CAS:528:DyaK1cXntFemur4%3D
-
Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ (1998) Automated docking using a lamarckian genetic algorithm and an empirical binding free energy function. J Comput Chem 19:1639–1662
-
(1998)
J Comput Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
55
-
-
0030255303
-
Scoring noncovalent protein-ligand interactions: a continuous differentiable function tuned to compute binding affinities
-
COI: 1:CAS:528:DyaK28XntV2ms7o%3D
-
Jain AN (1996) Scoring noncovalent protein-ligand interactions: a continuous differentiable function tuned to compute binding affinities. J Comput-Aided Mol Des 10:427–440
-
(1996)
J Comput-Aided Mol Des
, vol.10
, pp. 427-440
-
-
Jain, A.N.1
-
56
-
-
1642310340
-
Glide: a new approach for rapid, accurate docking and scoring. 2. enrichment factors in database screening
-
COI: 1:CAS:528:DC%2BD2cXhsFyit78%3D
-
Halgren TA, Murphy RB, Friesner RA, Beard HS, Frye LL, Pollard WT, Banks JL (2004) Glide: a new approach for rapid, accurate docking and scoring. 2. enrichment factors in database screening. J Med Chem 47:1750–1759
-
(2004)
J Med Chem
, vol.47
, pp. 1750-1759
-
-
Halgren, T.A.1
Murphy, R.B.2
Friesner, R.A.3
Beard, H.S.4
Frye, L.L.5
Pollard, W.T.6
Banks, J.L.7
-
57
-
-
12144289984
-
Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
-
COI: 1:CAS:528:DC%2BD2cXhsFyit74%3D
-
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, Mainz DT, Repasky MP, Knoll EH, Shelley M, Perry JK, Shaw DE, Francis P, Shenkin PS (2004) Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J Med Chem 47:1739–1749
-
(2004)
J Med Chem
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
58
-
-
0036022960
-
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
-
COI: 1:CAS:528:DC%2BD38XltlSqs7k%3D
-
Wang RX, Lai LH, Wang SM (2002) Further development and validation of empirical scoring functions for structure-based binding affinity prediction. J Comput Aided Mol Des 16:11–26
-
(2002)
J Comput Aided Mol Des
, vol.16
, pp. 11-26
-
-
Wang, R.X.1
Lai, L.H.2
Wang, S.M.3
-
59
-
-
33750124980
-
Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes
-
COI: 1:CAS:528:DC%2BD28XpvVGmurg%3D
-
Friesner RA, Murphy RB, Repasky MP, Frye LL, Greenwood JR, Halgren TA, Sanschagrin PC, Mainz DT (2006) Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes. J Med Chem 49:6177–6196
-
(2006)
J Med Chem
, vol.49
, pp. 6177-6196
-
-
Friesner, R.A.1
Murphy, R.B.2
Repasky, M.P.3
Frye, L.L.4
Greenwood, J.R.5
Halgren, T.A.6
Sanschagrin, P.C.7
Mainz, D.T.8
-
60
-
-
0031226772
-
Empirical scoring functions: I the development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
-
COI: 1:CAS:528:DyaK2sXnsV2it7o%3D
-
Eldridge MD, Murray CW, Auton TR, Paolini GV, Mee RP (1997) Empirical scoring functions: I the development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. J Comput Aided Mol Des 11:425–445
-
(1997)
J Comput Aided Mol Des
, vol.11
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
61
-
-
0028454828
-
The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure
-
COI: 1:STN:280:DyaK2M%2FlsVahtQ%3D%3D
-
Bohm HJ (1994) The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure. J Comput Aided Mol Des 8:243–256
-
(1994)
J Comput Aided Mol Des
, vol.8
, pp. 243-256
-
-
Bohm, H.J.1
-
62
-
-
0033670301
-
Deciphering common failures in molecular docking of ligand-protein complexes
-
COI: 1:CAS:528:DC%2BD3MXjtlSn
-
Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Arthurs S, Colson AB, Freer ST, Larson V, Luty BA, Marrone T, Rose PW (2000) Deciphering common failures in molecular docking of ligand-protein complexes. J Comput Aided Mol Des 14:731–751
-
(2000)
J Comput Aided Mol Des
, vol.14
, pp. 731-751
-
-
Verkhivker, G.M.1
Bouzida, D.2
Gehlhaar, D.K.3
Rejto, P.A.4
Arthurs, S.5
Colson, A.B.6
Freer, S.T.7
Larson, V.8
Luty, B.A.9
Marrone, T.10
Rose, P.W.11
-
63
-
-
26444588137
-
DrugScore(CSD)-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction
-
COI: 1:CAS:528:DC%2BD2MXpslWrsbo%3D
-
Velec HF, Gohlke H, Klebe G (2005) DrugScore(CSD)-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction. J Med Chem 48:6296–6303
-
(2005)
J Med Chem
, vol.48
, pp. 6296-6303
-
-
Velec, H.F.1
Gohlke, H.2
Klebe, G.3
-
64
-
-
0033545622
-
A general and fast scoring function for protein-ligand interactions: a simplified potential approach
-
COI: 1:CAS:528:DyaK1MXht1aksrk%3D
-
Muegge I, Martin YC (1999) A general and fast scoring function for protein-ligand interactions: a simplified potential approach. J Med Chem 42:791–804
-
(1999)
J Med Chem
, vol.42
, pp. 791-804
-
-
Muegge, I.1
Martin, Y.C.2
-
65
-
-
33750555073
-
An iterative knowledge-based scoring function to predict protein-ligand interactions: I derivation of interaction potentials
-
COI: 1:CAS:528:DC%2BD28XhtFenu7fI
-
Huang SY, Zou X (2006) An iterative knowledge-based scoring function to predict protein-ligand interactions: I derivation of interaction potentials. J Comput Chem 27:1866–1875
-
(2006)
J Comput Chem
, vol.27
, pp. 1866-1875
-
-
Huang, S.Y.1
Zou, X.2
-
66
-
-
33750574927
-
An iterative knowledge-based scoring function to predict protein-ligand interactions: II validation of the scoring function
-
COI: 1:CAS:528:DC%2BD28XhtFenu7fJ
-
Huang SY, Zou X (2006) An iterative knowledge-based scoring function to predict protein-ligand interactions: II validation of the scoring function. J Comput Chem 27:1876–1882
-
(2006)
J Comput Chem
, vol.27
, pp. 1876-1882
-
-
Huang, S.Y.1
Zou, X.2
-
67
-
-
0034645763
-
Knowledge-based scoring function to predict protein-ligand interactions
-
COI: 1:CAS:528:DC%2BD3cXht1Crtw%3D%3D
-
Gohlke H, Hendlich M, Klebe G (2000) Knowledge-based scoring function to predict protein-ligand interactions. J Mol Biol 295:337–356
-
(2000)
J Mol Biol
, vol.295
, pp. 337-356
-
-
Gohlke, H.1
Hendlich, M.2
Klebe, G.3
-
68
-
-
0033668689
-
Predicting binding modes, binding affinities and ‘hot spots’ for protein-ligand complexes using a knowledge-based scoring function
-
COI: 1:CAS:528:DC%2BD3MXptV2q
-
Gohlke H, Hendlich M, Klebe G (2000) Predicting binding modes, binding affinities and ‘hot spots’ for protein-ligand complexes using a knowledge-based scoring function. Perspect Drug Discov Des 20:115–144
-
(2000)
Perspect Drug Discov Des
, vol.20
, pp. 115-144
-
-
Gohlke, H.1
Hendlich, M.2
Klebe, G.3
-
69
-
-
70349932423
-
AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility
-
COI: 1:CAS:528:DC%2BD1MXht1GitrnK
-
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ (2009) AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem 30:2785–2791
-
(2009)
J Comput Chem
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.J.7
-
70
-
-
33947716119
-
A semiempirical free energy force field with charge-based desolvation
-
COI: 1:CAS:528:DC%2BD2sXjsVSms78%3D
-
Huey R, Morris GM, Olson AJ, Goodsell DS (2007) A semiempirical free energy force field with charge-based desolvation. J Comput Chem 28:1145–1152
-
(2007)
J Comput Chem
, vol.28
, pp. 1145-1152
-
-
Huey, R.1
Morris, G.M.2
Olson, A.J.3
Goodsell, D.S.4
-
71
-
-
43049141516
-
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals
-
COI: 1:CAS:528:DC%2BD1cXltFyltbY%3D
-
Zhao Y, Truhlar DG (2008) The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals. Theor Chem Acc 120:215–241
-
(2008)
Theor Chem Acc
, vol.120
, pp. 215-241
-
-
Zhao, Y.1
Truhlar, D.G.2
-
72
-
-
84867436995
-
Solvent effect on halogen bonding: the case of the I…O interaction
-
COI: 1:CAS:528:DC%2BC38XhslaqtbjE
-
Forni A, Rendine S, Pieraccini S, Sironi M (2012) Solvent effect on halogen bonding: the case of the I…O interaction. J Mol Graph Model 38:31–39
-
(2012)
J Mol Graph Model
, vol.38
, pp. 31-39
-
-
Forni, A.1
Rendine, S.2
Pieraccini, S.3
Sironi, M.4
-
73
-
-
84877104365
-
A theoretical investigation of the characteristics of hydrogen/halogen bonding interactions in dibromo-nitroaniline
-
COI: 1:CAS:528:DC%2BC3sXjtlWns7c%3D
-
Esrafili MD (2013) A theoretical investigation of the characteristics of hydrogen/halogen bonding interactions in dibromo-nitroaniline. J Mol Model 19:1417–1427
-
(2013)
J Mol Model
, vol.19
, pp. 1417-1427
-
-
Esrafili, M.D.1
-
74
-
-
84875979464
-
Halogen bonds: benchmarks and theoretical analysis
-
COI: 1:CAS:528:DC%2BC3sXjtlyjs7g%3D
-
Kozuch S, Martin JML (2013) Halogen bonds: benchmarks and theoretical analysis. J Chem Theory Comput 9:1918–1931
-
(2013)
J Chem Theory Comput
, vol.9
, pp. 1918-1931
-
-
Kozuch, S.1
Martin, J.M.L.2
-
75
-
-
40549127108
-
Density functionals with broad applicability in chemistry
-
COI: 1:CAS:528:DC%2BD1cXksV2iug%3D%3D
-
Zhao Y, Truhlar DG (2008) Density functionals with broad applicability in chemistry. Accounts of Chem Res 41:157–167
-
(2008)
Accounts of Chem Res
, vol.41
, pp. 157-167
-
-
Zhao, Y.1
Truhlar, D.G.2
-
76
-
-
80051629482
-
Noncovalent interactions in biochemistry
-
COI: 1:CAS:528:DC%2BC3MXksVKjsL0%3D
-
Riley KE, Hobza P (2011) Noncovalent interactions in biochemistry. Comput Mol Sci 1:3–17
-
(2011)
Comput Mol Sci
, vol.1
, pp. 3-17
-
-
Riley, K.E.1
Hobza, P.2
-
77
-
-
84887847433
-
On the reliability of pure and hybrid dft methods for the evaluation of halogen, chalcogen, and pnicogen bonds involving anionic and neutral electron donors
-
Bauzá A, Alkorta I, Frontera A, Elguero J (2013) On the reliability of pure and hybrid dft methods for the evaluation of halogen, chalcogen, and pnicogen bonds involving anionic and neutral electron donors. J Chem Theory Comput 9:5201–5210
-
(2013)
J Chem Theory Comput
, vol.9
, pp. 5201-5210
-
-
Bauzá, A.1
Alkorta, I.2
Frontera, A.3
Elguero, J.4
-
78
-
-
84919789358
-
Gaussian 09
-
Wallingford: CT
-
Frisch MJ et al.(2009) Gaussian 09. Gaussian Inc, Wallingford, CT
-
(2009)
Gaussian Inc
-
-
Frisch, M.J.1
-
79
-
-
60749089621
-
Computational study of the ground state properties of iodine and polyiodide ions
-
COI: 1:CAS:528:DC%2BD1MXhvF2ms7c%3D
-
Asaduzzaman AM, Schreckenbach G (2009) Computational study of the ground state properties of iodine and polyiodide ions. Theor Chem Acc 122:119–125
-
(2009)
Theor Chem Acc
, vol.122
, pp. 119-125
-
-
Asaduzzaman, A.M.1
Schreckenbach, G.2
-
80
-
-
84862959636
-
Theoretical characterization of single-electron iodine-bond weak interactions in CH3 center dot center dot center dot I-Y(Y = BH2, H, CH3, C2H3, C2H, CN, NC) systems
-
COI: 1:CAS:528:DC%2BC38Xht12itLs%3D
-
Yuan K, Liu YZ, Zhu YC, Zuo GF, Lu LL, Li ZF (2012) Theoretical characterization of single-electron iodine-bond weak interactions in CH3 center dot center dot center dot I-Y(Y = BH2, H, CH3, C2H3, C2H, CN, NC) systems. Chin Sci Bull 57:328–335
-
(2012)
Chin Sci Bull
, vol.57
, pp. 328-335
-
-
Yuan, K.1
Liu, Y.Z.2
Zhu, Y.C.3
Zuo, G.F.4
Lu, L.L.5
Li, Z.F.6
-
81
-
-
64549147949
-
Ab initio calculations on halogen-bonded complexes and comparison with density functional methods
-
COI: 1:CAS:528:DC%2BD1MXjsFWnsbw%3D
-
Lu YX, Zou JW, Fan JC, Zhao WN, Jiang YJ, Yu QS (2009) Ab initio calculations on halogen-bonded complexes and comparison with density functional methods. J Comput Chem 30:725–732
-
(2009)
J Comput Chem
, vol.30
, pp. 725-732
-
-
Lu, Y.X.1
Zou, J.W.2
Fan, J.C.3
Zhao, W.N.4
Jiang, Y.J.5
Yu, Q.S.6
-
82
-
-
35748963867
-
Ab initio investigation of the complexes between bromobenzene and several electron donors: Some insights into the magnitude and nature of halogen bonding interactions
-
COI: 1:CAS:528:DC%2BD2sXhtFCnu7zE
-
Lu YX, Zou JW, Wang YH, Jiang YJ, Yu QS (2007) Ab initio investigation of the complexes between bromobenzene and several electron donors: Some insights into the magnitude and nature of halogen bonding interactions. J Phys Chem A 111:10781–10788
-
(2007)
J Phys Chem A
, vol.111
, pp. 10781-10788
-
-
Lu, Y.X.1
Zou, J.W.2
Wang, Y.H.3
Jiang, Y.J.4
Yu, Q.S.5
-
83
-
-
61449098598
-
Br center dot center dot center dot o complexes as probes of factors affecting halogen bonding: interactions of bromobenzenes and bromopyrimidines with acetone
-
COI: 1:CAS:528:DC%2BD1cXhsFaisrrN
-
Riley KE, Murray JS, Politzer P, Concha MC, Hobza P (2009) Br center dot center dot center dot o complexes as probes of factors affecting halogen bonding: interactions of bromobenzenes and bromopyrimidines with acetone. J Chem Theory Comput 5:155–163
-
(2009)
J Chem Theory Comput
, vol.5
, pp. 155-163
-
-
Riley, K.E.1
Murray, J.S.2
Politzer, P.3
Concha, M.C.4
Hobza, P.5
-
84
-
-
84961985847
-
Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model
-
COI: 1:CAS:528:DyaK1cXht1Cgt7o%3D
-
Barone V, Cossi M (1998) Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model. J Phys Chem A 102:1995–2001
-
(1998)
J Phys Chem A
, vol.102
, pp. 1995-2001
-
-
Barone, V.1
Cossi, M.2
-
85
-
-
77951962870
-
The calculation of small molecular interactions by the differences of separate total energies. some procedures with reduced errors (Reprinted from Molecular Physics, vol 19, pg 553–566, 1970)
-
Boys SF, Bernardi F (2002) The calculation of small molecular interactions by the differences of separate total energies. some procedures with reduced errors (Reprinted from Molecular Physics, vol 19, pg 553–566, 1970). Mol Phys 100:65–73
-
(2002)
Mol Phys
, vol.100
, pp. 65-73
-
-
Boys, S.F.1
Bernardi, F.2
-
86
-
-
0035025191
-
DOCK 4.0: search strategies for automated molecular docking of flexible molecule databases
-
COI: 1:CAS:528:DC%2BD3MXktVSlsbc%3D
-
Ewing TJ, Makino S, Skillman AG, Kuntz ID (2001) DOCK 4.0: search strategies for automated molecular docking of flexible molecule databases. J Comput Aided Mol Des 15:411–428
-
(2001)
J Comput Aided Mol Des
, vol.15
, pp. 411-428
-
-
Ewing, T.J.1
Makino, S.2
Skillman, A.G.3
Kuntz, I.D.4
-
87
-
-
66449110287
-
DOCK 6: combining techniques to model RNA-small molecule complexes
-
COI: 1:CAS:528:DC%2BD1MXmvFCntrY%3D
-
Lang PT, Brozell SR, Mukherjee S, Pettersen EF, Meng EC, Thomas V, Rizzo RC, Case DA, James TL, Kuntz ID (2009) DOCK 6: combining techniques to model RNA-small molecule complexes. RNA 15:1219–1230
-
(2009)
RNA
, vol.15
, pp. 1219-1230
-
-
Lang, P.T.1
Brozell, S.R.2
Mukherjee, S.3
Pettersen, E.F.4
Meng, E.C.5
Thomas, V.6
Rizzo, R.C.7
Case, D.A.8
James, T.L.9
Kuntz, I.D.10
-
88
-
-
84882661279
-
Genetic predisposition to dyslipidemia
-
COI: 1:CAS:528:DC%2BC3sXks1Sqsrg%3D
-
Hirayama S, Miida T (2013) Genetic predisposition to dyslipidemia. Rinsho Byori 61:159–166
-
(2013)
Rinsho Byori
, vol.61
, pp. 159-166
-
-
Hirayama, S.1
Miida, T.2
-
89
-
-
15244346501
-
LigScore: a novel scoring function for predicting binding affinities
-
COI: 1:CAS:528:DC%2BD2MXitlChtrY%3D
-
Krammer A, Kirchhoff PD, Jiang X, Venkatachalam CM, Waldman M (2005) LigScore: a novel scoring function for predicting binding affinities. J Mol Graph Model 23:395–407
-
(2005)
J Mol Graph Model
, vol.23
, pp. 395-407
-
-
Krammer, A.1
Kirchhoff, P.D.2
Jiang, X.3
Venkatachalam, C.M.4
Waldman, M.5
-
90
-
-
33749242403
-
PMF scoring revisited
-
COI: 1:CAS:528:DC%2BD2MXmtlGmtb0%3D
-
Muegge IA (2006) PMF scoring revisited. J Med Chem 49:5895–5902
-
(2006)
J Med Chem
, vol.49
, pp. 5895-5902
-
-
Muegge, I.A.1
-
91
-
-
84878388937
-
The next generation of novel low-density lipoprotein cholesterol-lowering agents: proprotein convertase subtilisin/kexin 9 inhibitors
-
COI: 1:CAS:528:DC%2BC3sXosFOjs7s%3D
-
Shen L, Peng H, Xu D, Zhao S (2013) The next generation of novel low-density lipoprotein cholesterol-lowering agents: proprotein convertase subtilisin/kexin 9 inhibitors. Pharmacol Res 73:27–34
-
(2013)
Pharmacol Res
, vol.73
, pp. 27-34
-
-
Shen, L.1
Peng, H.2
Xu, D.3
Zhao, S.4
-
92
-
-
84888224178
-
A knowledge-based halogen bonding scoring function for predicting protein-ligand interactions
-
COI: 1:CAS:528:DC%2BC3sXhsFaktr3F
-
Liu YT, Xu ZJ, Yang Z, Chen KX, Zhu WL (2013) A knowledge-based halogen bonding scoring function for predicting protein-ligand interactions. J Mol Model 19:5015–5030
-
(2013)
J Mol Model
, vol.19
, pp. 5015-5030
-
-
Liu, Y.T.1
Xu, Z.J.2
Yang, Z.3
Chen, K.X.4
Zhu, W.L.5
-
93
-
-
2542530042
-
The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures
-
COI: 1:CAS:528:DC%2BD2cXjs1Sjs74%3D
-
Wang RX, Fang XL, Lu YP, Wang SM (2004) The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures. J Med Chem 47:2977–2980
-
(2004)
J Med Chem
, vol.47
, pp. 2977-2980
-
-
Wang, R.X.1
Fang, X.L.2
Lu, Y.P.3
Wang, S.M.4
-
94
-
-
20444422149
-
The PDBbind database: methodologies and updates
-
COI: 1:CAS:528:DC%2BD2MXktlKisbg%3D
-
Wang RX, Fang XL, Lu YP, Yang CY, Wang SM (2005) The PDBbind database: methodologies and updates. J Med Chem 48:4111–4119
-
(2005)
J Med Chem
, vol.48
, pp. 4111-4119
-
-
Wang, R.X.1
Fang, X.L.2
Lu, Y.P.3
Yang, C.Y.4
Wang, S.M.5
-
96
-
-
66149103553
-
Comparative assessment of scoring functions on a diverse test set
-
COI: 1:CAS:528:DC%2BD1MXkt1aqtLg%3D
-
Cheng TJ, Li X, Li Y, Liu ZH, Wang RX (2009) Comparative assessment of scoring functions on a diverse test set. J Chem Inf Model 49:1079–1093
-
(2009)
J Chem Inf Model
, vol.49
, pp. 1079-1093
-
-
Cheng, T.J.1
Li, X.2
Li, Y.3
Liu, Z.H.4
Wang, R.X.5
-
97
-
-
84856215640
-
Multiwfn: a multifunctional wavefunction analyzer
-
Lu T, Chen FW (2012) Multiwfn: a multifunctional wavefunction analyzer. J Comput Chem 33:580–592
-
(2012)
J Comput Chem
, vol.33
, pp. 580-592
-
-
Lu, T.1
Chen, F.W.2
-
99
-
-
0001010885
-
Representation of vanderwaals (Vdw) interactions in molecular mechanics force-fields — potential form, combination rules, and Vdw parameters
-
COI: 1:CAS:528:DyaK38XlsFSgsb0%3D
-
Halgren TA (1992) Representation of vanderwaals (Vdw) interactions in molecular mechanics force-fields — potential form, combination rules, and Vdw parameters. J Am Chem Soc 114:7827–7843
-
(1992)
J Am Chem Soc
, vol.114
, pp. 7827-7843
-
-
Halgren, T.A.1
|