메뉴 건너뛰기




Volumn 21, Issue 8, 2015, Pages 1511-1518

Genome-wide detection of high abundance N6-methyladenosine sites by microarray

Author keywords

METTL14; METTL3; Mouse embryonic stem cells; N6 methyladenosine; RNA methylation; Two color microarray

Indexed keywords

6 N METHYLADENOSINE; MESSENGER RNA; MICRORNA; ADENOSINE; N(6)-METHYLADENOSINE;

EID: 84937884118     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.051474.115     Document Type: Article
Times cited : (12)

References (32)
  • 3
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
    • (1994) Proc Int Conf Intell Syst Mol Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 6
  • 8
    • 84872032385 scopus 로고    scopus 로고
    • Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing
    • Dominissini D, Moshitch-Moshkovitz S, Salmon-DivonM, Amariglio N, Rechavi G. 2013. Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing. Nat Protoc 8: 176-189.
    • (2013) Nat Protoc , vol.8 , pp. 176-189
    • Dominissini, D.1    Moshitch-Moshkovitz, S.2    Salmon-Divonm Amariglio, N.3    Rechavi, G.4
  • 9
    • 84898814417 scopus 로고    scopus 로고
    • Gene expression regulation mediated through reversible m(6)A RNA methylation
    • Fu Y, Dominissini D, Rechavi G, He C. 2014. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat Rev Genet 15: 293-306.
    • (2014) Nat Rev Genet , vol.15 , pp. 293-306
    • Fu, Y.1    Dominissini, D.2    Rechavi, G.3    He, C.4
  • 13
    • 84905653451 scopus 로고    scopus 로고
    • Methylated nucleosides in tRNA and tRNA methyltransferases
    • Hori H. 2014. Methylated nucleosides in tRNA and tRNA methyltransferases. Front Genet 5: 144.
    • (2014) Front Genet , vol.5 , pp. 144
    • Hori, H.1
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang daW, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 16
    • 67649837030 scopus 로고    scopus 로고
    • Rtracklayer: An R package for interfacing with genome browsers
    • Lawrence M, Gentleman R, Carey V. 2009. rtracklayer: an R package for interfacing with genome browsers. Bioinformatics 25: 1841-1842.
    • (2009) Bioinformatics , vol.25 , pp. 1841-1842
    • Lawrence, M.1    Gentleman, R.2    Carey, V.3
  • 17
  • 18
    • 84888423912 scopus 로고    scopus 로고
    • Probing N6- methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
    • Liu N, Parisien M, Dai Q, Zheng G, He C, Pan T. 2013. Probing N6- methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA 19: 1848-1856.
    • (2013) RNA , vol.19 , pp. 1848-1856
    • Liu, N.1    Parisien, M.2    Dai, Q.3    Zheng, G.4    He, C.5    Pan, T.6
  • 20
    • 84899586607 scopus 로고    scopus 로고
    • The dynamic epitranscriptome: N6-methyladenosine and gene expression control
    • Meyer KD, Jaffrey SR. 2014. The dynamic epitranscriptome: N6-methyladenosine and gene expression control. Nat Rev Mol Cell Biol 15: 313-326.
    • (2014) Nat Rev Mol Cell Biol , vol.15 , pp. 313-326
    • Meyer, K.D.1    Jaffrey, S.R.2
  • 21
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
    • Meyer KD, Saletore Y, Zumbo P, Elemento O, Mason CE, Jaffrey SR. 2012. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149: 1635-1646.
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1    Saletore, Y.2    Zumbo, P.3    Elemento, O.4    Mason, C.E.5    Jaffrey, S.R.6
  • 22
    • 0035476599 scopus 로고    scopus 로고
    • Methylation of the nucleobases in RNA oligonucleotides mediates duplex-hairpin conversion
    • Micura R, Pils W, Hobartner C, Grubmayr K, Ebert MO, Jaun B. 2001. Methylation of the nucleobases in RNA oligonucleotides mediates duplex-hairpin conversion. Nucleic Acids Res 29: 3997-4005.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3997-4005
    • Micura, R.1    Pils, W.2    Hobartner, C.3    Grubmayr, K.4    Ebert, M.O.5    Jaun, B.6
  • 24
    • 84922780316 scopus 로고    scopus 로고
    • Structure and thermodynamics of N-methyladenosine in RNA: A spring-loaded base modification
    • Roost C, Lynch SR, Batista PJ, Qu K, Chang HY, Kool ET. 2015. Structure and thermodynamics of N-methyladenosine in RNA: a spring-loaded base modification. J Am Chem Soc 137: 2107-2115.
    • (2015) J Am Chem Soc , vol.137 , pp. 2107-2115
    • Roost, C.1    Lynch, S.R.2    Batista, P.J.3    Qu, K.4    Chang, H.Y.5    Kool, E.T.6
  • 26
    • 84904035764 scopus 로고    scopus 로고
    • Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites
    • SchwartzS, MumbachMR, JovanovicM, WangT, MaciagK, BushkinGG, Mertins P, Ter-Ovanesyan D, Habib N, Cacchiarelli D, et al. 2014. Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. Cell Rep 8: 284-296.
    • (2014) Cell Rep , vol.8 , pp. 284-296
    • Mumbachmr, S.1    Wangt, J.2    Bushkingg, M.3    Mertins, P.4    Ter-Ovanesyan, D.5    Habib, N.6    Cacchiarelli, D.7
  • 27
    • 18744369640 scopus 로고    scopus 로고
    • Use of within-array replicate spots for assessing differential expression in microarray experiments
    • Smyth GK, Michaud J, Scott HS. 2005. Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21: 2067-2075.
    • (2005) Bioinformatics , vol.21 , pp. 2067-2075
    • Smyth, G.K.1    Michaud, J.2    Scott, H.S.3
  • 29
    • 84893310526 scopus 로고    scopus 로고
    • N(6)- methyladenosine modification destabilizes developmental regulators in embryonic stem cells
    • Wang Y, Li Y, Toth JI, Petroski MD, Zhang Z, Zhao JC. 2014b. N(6)- methyladenosine modification destabilizes developmental regulators in embryonic stem cells. Nat Cell Biol 16: 191-198.
    • (2014) Nat Cell Biol , vol.16 , pp. 191-198
    • Wang, Y.1    Li, Y.2    Toth, J.I.3    Petroski, M.D.4    Zhang, Z.5    Zhao, J.C.6
  • 30
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. 2002. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30: e15.
    • (2002) Nucleic Acids Res , vol.30 , pp. e15
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.