-
1
-
-
0027182114
-
Helicases: Amino acid comparisons and structure-function relationships
-
Gorbalenya, A. E. and Koonin, E. V. (1993) Helicases: amino acid comparisons and structure-function relationships. Curr. Opin. Struct. Biol., 3, 419-429.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
2
-
-
0024344173
-
Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes
-
Gorbalenya, A. E., Koonin, E. V., Donchenko, A. P. and Blinov, V. M. (1989) Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res., 17, 4713-4730.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 4713-4730
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
Donchenko, A.P.3
Blinov, V.M.4
-
3
-
-
77955582184
-
SF1 and SF2 helicases: Family matters
-
Fairman-Williams, M. E., Guenther, U. P. and Jankowsky, E. (2010) SF1 and SF2 helicases: family matters. Curr. Opin. Struct. Biol., 20, 313-324.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 313-324
-
-
Fairman-Williams, M.E.1
Guenther, U.P.2
Jankowsky, E.3
-
4
-
-
79956071179
-
DEAD-box proteins as RNA helicases and chaperones
-
Jarmoskaite, I. and Russell, R. (2011) DEAD-box proteins as RNA helicases and chaperones. Wiley Interdiscip. Rev. RNA, 2, 135-152.
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 135-152
-
-
Jarmoskaite, I.1
Russell, R.2
-
5
-
-
0028299868
-
A human DEAD box protein with partial homology to heterogeneous nuclear ribonucleoprotein U
-
Godbout, R., Hale, M. and Bisgrove, D. (1994) A human DEAD box protein with partial homology to heterogeneous nuclear ribonucleoprotein U. Gene, 138, 243-245.
-
(1994)
Gene
, vol.138
, pp. 243-245
-
-
Godbout, R.1
Hale, M.2
Bisgrove, D.3
-
6
-
-
0027198218
-
Amplification of a DEAD box protein gene in retinoblastoma cell lines
-
Godbout, R. and Squire, J. (1993) Amplification of a DEAD box protein gene in retinoblastoma cell lines. Proc. Natl. Acad. Sci. U. S. A., 90, 7578-7582.
-
(1993)
Proc. Natl. Acad. Sci. U. S. A.
, vol.90
, pp. 7578-7582
-
-
Godbout, R.1
Squire, J.2
-
7
-
-
0032516870
-
Overexpression of a DEAD box protein (DDX1) in neuroblastoma and retinoblastoma cell lines
-
Godbout, R., Packer, M. and Bie, W. (1998) Overexpression of a DEAD box protein (DDX1) in neuroblastoma and retinoblastoma cell lines. J. Biol. Chem., 273, 21161-21168.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 21161-21168
-
-
Godbout, R.1
Packer, M.2
Bie, W.3
-
8
-
-
79954715036
-
Dead-box or black-box: Is DDX1 a potential biomarker in breast cancer?
-
Balko, J. M. and Arteaga, C. L. (2011) Dead-box or black-box: is DDX1 a potential biomarker in breast cancer? Breast Cancer Res. Treat., 127, 65-67.
-
(2011)
Breast Cancer Res. Treat.
, vol.127
, pp. 65-67
-
-
Balko, J.M.1
Arteaga, C.L.2
-
9
-
-
84922588965
-
The RNA-binding protein DDX1 promotes primary microRNA maturation and inhibits ovarian tumor progression
-
Han, C., Liu, Y., Wan, G., Choi, H. J., Zhao, L., Ivan, C., He, X., Sood, A. K., Zhang, X. and Lu, X. (2014) The RNA-binding protein DDX1 promotes primary microRNA maturation and inhibits ovarian tumor progression. Cell Rep., 8, 1447-1460.
-
(2014)
Cell Rep.
, vol.8
, pp. 1447-1460
-
-
Han, C.1
Liu, Y.2
Wan, G.3
Choi, H.J.4
Zhao, L.5
Ivan, C.6
He, X.7
Sood, A.K.8
Zhang, X.9
Lu, X.10
-
10
-
-
0035171057
-
Association of human DEAD box protein DDX1 with a cleavage stimulation factor involved in 3'-end processing of pre-MRNA
-
Bleoo, S., Sun, X., Hendzel, M. J., Rowe, J. M., Packer, M. and Godbout, R. (2001) Association of human DEAD box protein DDX1 with a cleavage stimulation factor involved in 3'-end processing of pre-MRNA. Mol. Biol. Cell, 12, 3046-3059.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 3046-3059
-
-
Bleoo, S.1
Sun, X.2
Hendzel, M.J.3
Rowe, J.M.4
Packer, M.5
Godbout, R.6
-
11
-
-
0037174860
-
An RNA helicase, DDX1, interacting with poly (A) RNA and heterogeneous nuclear ribonucleoprotein K
-
Chen, H. C., Lin, W. C., Tsay, Y. G., Lee, S. C. and Chang, C. J. (2002) An RNA helicase, DDX1, interacting with poly (A) RNA and heterogeneous nuclear ribonucleoprotein K. J. Biol. Chem., 277, 40403-40409.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40403-40409
-
-
Chen, H.C.1
Lin, W.C.2
Tsay, Y.G.3
Lee, S.C.4
Chang, C.J.5
-
12
-
-
61449167986
-
The DEAD-box RNA helicase DDX1 interacts with RelA and enhances nuclear factor kappaB-mediated transcription
-
Ishaq, M., Ma, L., Wu, X., Mu, Y., Pan, J., Hu, J., Hu, T., Fu, Q. and Guo, D. (2009) The DEAD-box RNA helicase DDX1 interacts with RelA and enhances nuclear factor kappaB-mediated transcription. J. Cell. Biochem., 106, 296-305.
-
(2009)
J. Cell. Biochem.
, vol.106
, pp. 296-305
-
-
Ishaq, M.1
Ma, L.2
Wu, X.3
Mu, Y.4
Pan, J.5
Hu, J.6
Hu, T.7
Fu, Q.8
Guo, D.9
-
13
-
-
84883414419
-
DEAD box protein DDX1 regulates cytoplasmic localization of KSRP
-
Chou, C. F., Lin, W. J., Lin, C. C., Luber, C. A., Godbout, R., Mann, M. and Chen, C. Y. (2013) DEAD box protein DDX1 regulates cytoplasmic localization of KSRP. PLoS One, 8, e73752.
-
(2013)
PLoS One
, vol.8
, pp. e73752
-
-
Chou, C.F.1
Lin, W.J.2
Lin, C.C.3
Luber, C.A.4
Godbout, R.5
Mann, M.6
Chen, C.Y.7
-
14
-
-
53549091886
-
A role for DEAD box 1 at DNA double-strand breaks
-
Li, L., Monckton, E. A. and Godbout, R. (2008) A role for DEAD box 1 at DNA double-strand breaks. Mol. Cell. Biol., 28, 6413-6425.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 6413-6425
-
-
Li, L.1
Monckton, E.A.2
Godbout, R.3
-
15
-
-
79951476167
-
HSPC117 is the essential subunit of a human tRNA splicing ligase complex
-
Popow, J., Englert, M., Weitzer, S., Schleiffer, A., Mierzwa, B., Mechtler, K., Trowitzsch, S., Will, C. L., Luhrmann, R., Soll, D. et al. (2011) HSPC117 is the essential subunit of a human tRNA splicing ligase complex. Science, 331, 760-764.
-
(2011)
Science
, vol.331
, pp. 760-764
-
-
Popow, J.1
Englert, M.2
Weitzer, S.3
Schleiffer, A.4
Mierzwa, B.5
Mechtler, K.6
Trowitzsch, S.7
Will, C.L.8
Luhrmann, R.9
Soll, D.10
-
16
-
-
84897520123
-
hCLE/C14orf166 associates with DDX1-HSPC117-FAM98B in a novel transcription-dependent shuttling RNA-transporting complex
-
Perez-Gonzalez, A., Pazo, A., Navajas, R., Ciordia, S., Rodriguez-Frandsen, A. and Nieto, A. (2014) hCLE/C14orf166 associates with DDX1-HSPC117-FAM98B in a novel transcription-dependent shuttling RNA-transporting complex. PLoS One, 9, e90957.
-
(2014)
PLoS One
, vol.9
, pp. e90957
-
-
Perez-Gonzalez, A.1
Pazo, A.2
Navajas, R.3
Ciordia, S.4
Rodriguez-Frandsen, A.5
Nieto, A.6
-
17
-
-
4143088149
-
Kinesin transports RNA: Isolation and characterization of an RNA-transporting granule
-
Kanai, Y., Dohmae, N. and Hirokawa, N. (2004) Kinesin transports RNA: isolation and characterization of an RNA-transporting granule. Neuron, 43, 513-525.
-
(2004)
Neuron
, vol.43
, pp. 513-525
-
-
Kanai, Y.1
Dohmae, N.2
Hirokawa, N.3
-
18
-
-
84903779727
-
Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors
-
Popow, J., Jurkin, J., Schleiffer, A. and Martinez, J. (2014) Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors. Nature, 511, 104-107.
-
(2014)
Nature
, vol.511
, pp. 104-107
-
-
Popow, J.1
Jurkin, J.2
Schleiffer, A.3
Martinez, J.4
-
19
-
-
77956646333
-
The cellular RNA helicase DDX1 interacts with coronavirus nonstructural protein 14 and enhances viral replication
-
Xu, L., Khadijah, S., Fang, S., Wang, L., Tay, F. P. and Liu, D. X. (2010) The cellular RNA helicase DDX1 interacts with coronavirus nonstructural protein 14 and enhances viral replication. J. Virol., 84, 8571-8583.
-
(2010)
J. Virol.
, vol.84
, pp. 8571-8583
-
-
Xu, L.1
Khadijah, S.2
Fang, S.3
Wang, L.4
Tay, F.P.5
Liu, D.X.6
-
20
-
-
84908060960
-
Nucleocapsid phosphorylation and RNA helicase DDX1 recruitment enables coronavirus transition from discontinuous to continuous transcription
-
Wu, C. H., Chen, P. J. and Yeh, S. H. (2014) Nucleocapsid phosphorylation and RNA helicase DDX1 recruitment enables coronavirus transition from discontinuous to continuous transcription. Cell Host Microbe., 16, 462-472.
-
(2014)
Cell Host Microbe.
, vol.16
, pp. 462-472
-
-
Wu, C.H.1
Chen, P.J.2
Yeh, S.H.3
-
21
-
-
33746215062
-
Subproteomic analysis of the cellular proteins associated with the 3' untranslated region of the hepatitis C virus genome in human liver cells
-
Tingting, P., Caiyun, F., Zhigang, Y., Pengyuan, Y. and Zhenghong, Y. (2006) Subproteomic analysis of the cellular proteins associated with the 3' untranslated region of the hepatitis C virus genome in human liver cells. Biochem. Biophys. Res. Commun., 347, 683-691.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.347
, pp. 683-691
-
-
Tingting, P.1
Caiyun, F.2
Zhigang, Y.3
Pengyuan, Y.4
Zhenghong, Y.5
-
22
-
-
33947402215
-
Identification of DDX1 as a JC virus transcriptional control region-binding protein
-
Sunden, Y., Semba, S., Suzuki, T., Okada, Y., Orba, Y., Nagashima, K., Umemura, T. and Sawa, H. (2007) Identification of DDX1 as a JC virus transcriptional control region-binding protein. Microbiol. Immunol., 51, 327-337.
-
(2007)
Microbiol. Immunol.
, vol.51
, pp. 327-337
-
-
Sunden, Y.1
Semba, S.2
Suzuki, T.3
Okada, Y.4
Orba, Y.5
Nagashima, K.6
Umemura, T.7
Sawa, H.8
-
23
-
-
7044253474
-
Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function
-
Yedavalli, V. S., Neuveut, C., Chi, Y. H., Kleiman, L. and Jeang, K. T. (2004) Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function. Cell, 119, 381-392.
-
(2004)
Cell
, vol.119
, pp. 381-392
-
-
Yedavalli, V.S.1
Neuveut, C.2
Chi, Y.H.3
Kleiman, L.4
Jeang, K.T.5
-
24
-
-
9644289433
-
A DEAD box protein facilitates HIV-1 replication as a cellular co-factor of Rev
-
Fang, J., Kubota, S., Yang, B., Zhou, N., Zhang, H., Godbout, R. and Pomerantz, R. J. (2004) A DEAD box protein facilitates HIV-1 replication as a cellular co-factor of Rev. Virology, 330, 471-480.
-
(2004)
Virology
, vol.330
, pp. 471-480
-
-
Fang, J.1
Kubota, S.2
Yang, B.3
Zhou, N.4
Zhang, H.5
Godbout, R.6
Pomerantz, R.J.7
-
25
-
-
18844416401
-
The RNA helicase DDX1 is involved in restricted HIV-1 Rev function in human astrocytes
-
Fang, J., Acheampong, E., Dave, R., Wang, F., Mukhtar, M. and Pomerantz, R. J. (2005) The RNA helicase DDX1 is involved in restricted HIV-1 Rev function in human astrocytes. Virology, 336, 299-307.
-
(2005)
Virology
, vol.336
, pp. 299-307
-
-
Fang, J.1
Acheampong, E.2
Dave, R.3
Wang, F.4
Mukhtar, M.5
Pomerantz, R.J.6
-
26
-
-
79960343331
-
Single-molecule studies reveal that DEAD box protein DDX1 promotes oligomerization of HIV-1 Rev on the Rev response element
-
Robertson-Anderson, R. M., Wang, J., Edgcomb, S. P., Carmel, A. B., Williamson, J. R. and Millar, D. P. (2011) Single-molecule studies reveal that DEAD box protein DDX1 promotes oligomerization of HIV-1 Rev on the Rev response element. J. Mol. Biol., 410, 959-971.
-
(2011)
J. Mol. Biol.
, vol.410
, pp. 959-971
-
-
Robertson-Anderson, R.M.1
Wang, J.2
Edgcomb, S.P.3
Carmel, A.B.4
Williamson, J.R.5
Millar, D.P.6
-
27
-
-
84855277384
-
DDX1 is an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication
-
Edgcomb, S. P., Carmel, A. B., Naji, S., Ambrus-Aikelin, G., Reyes, J. R., Saphire, A. C., Gerace, L. and Williamson, J. R. (2011) DDX1 is an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication. J. Mol. Biol., 415, 61-74.
-
(2011)
J. Mol. Biol.
, vol.415
, pp. 61-74
-
-
Edgcomb, S.P.1
Carmel, A.B.2
Naji, S.3
Ambrus-Aikelin, G.4
Reyes, J.R.5
Saphire, A.C.6
Gerace, L.7
Williamson, J.R.8
-
29
-
-
78650854687
-
RNA helicases at work: Binding and rearranging
-
Jankowsky, E. (2011) RNA helicases at work: binding and rearranging. Trends Biochem. Sci., 36, 19-29.
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
30
-
-
33646032358
-
Bent out of shape: RNA unwinding by the DEAD-box helicase Vasa
-
Linder, P. and Lasko, P. (2006) Bent out of shape: RNA unwinding by the DEAD-box helicase Vasa. Cell, 125, 219-221.
-
(2006)
Cell
, vol.125
, pp. 219-221
-
-
Linder, P.1
Lasko, P.2
-
31
-
-
33646017369
-
Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa
-
Sengoku, T., Nureki, O., Nakamura, A., Kobayashi, S. and Yokoyama, S. (2006) Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell, 125, 287-300.
-
(2006)
Cell
, vol.125
, pp. 287-300
-
-
Sengoku, T.1
Nureki, O.2
Nakamura, A.3
Kobayashi, S.4
Yokoyama, S.5
-
32
-
-
84875171510
-
Toward a molecular understanding of RNA remodeling by DEAD-box proteins
-
Russell, R., Jarmoskaite, I. and Lambowitz, A. M. (2013) Toward a molecular understanding of RNA remodeling by DEAD-box proteins. RNA Biol., 10, 44-55.
-
(2013)
RNA Biol.
, vol.10
, pp. 44-55
-
-
Russell, R.1
Jarmoskaite, I.2
Lambowitz, A.M.3
-
33
-
-
84902504613
-
Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28
-
Mohlmann, S., Mathew, R., Neumann, P., Schmitt, A., Luhrmann, R. and Ficner, R. (2014) Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28. Acta Crystallogr. D Biol. Crystallogr., 70, 1622-1630.
-
(2014)
Acta Crystallogr. D Biol. Crystallogr.
, vol.70
, pp. 1622-1630
-
-
Mohlmann, S.1
Mathew, R.2
Neumann, P.3
Schmitt, A.4
Luhrmann, R.5
Ficner, R.6
-
34
-
-
69749126977
-
Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA
-
Del Campo, M. and Lambowitz, A. M. (2009) Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA. Mol. Cell, 35, 598-609.
-
(2009)
Mol. Cell
, vol.35
, pp. 598-609
-
-
Del Campo, M.1
Lambowitz, A.M.2
-
35
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA
-
Andersen, C. B., Ballut, L., Johansen, J. S., Chamieh, H., Nielsen, K. H., Oliveira, C. L., Pedersen, J. S., Seraphin, B., Le Hir, H. and Andersen, G. R. (2006) Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science, 313, 1968-1972.
-
(2006)
Science
, vol.313
, pp. 1968-1972
-
-
Andersen, C.B.1
Ballut, L.2
Johansen, J.S.3
Chamieh, H.4
Nielsen, K.H.5
Oliveira, C.L.6
Pedersen, J.S.7
Seraphin, B.8
Le Hir, H.9
Andersen, G.R.10
-
36
-
-
58149092125
-
Mechanism of ATP turnover inhibition in the EJC
-
Nielsen, K. H., Chamieh, H., Andersen, C. B., Fredslund, F., Hamborg, K., Le Hir, H. and Andersen, G. R. (2009) Mechanism of ATP turnover inhibition in the EJC. RNA, 15, 67-75.
-
(2009)
RNA
, vol.15
, pp. 67-75
-
-
Nielsen, K.H.1
Chamieh, H.2
Andersen, C.B.3
Fredslund, F.4
Hamborg, K.5
Le Hir, H.6
Andersen, G.R.7
-
37
-
-
33747182255
-
The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
-
Bono, F., Ebert, J., Lorentzen, E. and Conti, E. (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell, 126, 713-725.
-
(2006)
Cell
, vol.126
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
38
-
-
84867064003
-
Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p
-
Mallam, A. L., Del Campo, M., Gilman, B., Sidote, D. J. and Lambowitz, A. M. (2012) Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p. Nature, 490, 121-125.
-
(2012)
Nature
, vol.490
, pp. 121-125
-
-
Mallam, A.L.1
Del Campo, M.2
Gilman, B.3
Sidote, D.J.4
Lambowitz, A.M.5
-
39
-
-
70350089113
-
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
-
Hilbert, M., Karow, A. R. and Klostermeier, D. (2009) The mechanism of ATP-dependent RNA unwinding by DEAD box proteins. Biol. Chem., 390, 1237-1250.
-
(2009)
Biol. Chem.
, vol.390
, pp. 1237-1250
-
-
Hilbert, M.1
Karow, A.R.2
Klostermeier, D.3
-
40
-
-
39649096274
-
The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA
-
Henn, A., Cao, W., Hackney, D. D. and De La Cruz, E. M. (2008) The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA. J. Mol. Biol., 377, 193-205.
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 193-205
-
-
Henn, A.1
Cao, W.2
Hackney, D.D.3
De La Cruz, E.M.4
-
41
-
-
77749239820
-
Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA
-
Henn, A., Cao, W., Licciardello, N., Heitkamp, S. E., Hackney, D. D. and De La Cruz, E. M. (2010) Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA. Proc. Natl. Acad. Sci. U. S. A., 107, 4046-4050.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 4046-4050
-
-
Henn, A.1
Cao, W.2
Licciardello, N.3
Heitkamp, S.E.4
Hackney, D.D.5
De La Cruz, E.M.6
-
42
-
-
79956103194
-
Mechanism of Mss116 ATPase reveals functional diversity of DEAD-Box proteins
-
Cao, W., Coman, M. M., Ding, S., Henn, A., Middleton, E. R., Bradley, M. J., Rhoades, E., Hackney, D. D., Pyle, A. M. and De La Cruz, E. M. (2011) Mechanism of Mss116 ATPase reveals functional diversity of DEAD-Box proteins. J. Mol. Biol., 409, 399-414.
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 399-414
-
-
Cao, W.1
Coman, M.M.2
Ding, S.3
Henn, A.4
Middleton, E.R.5
Bradley, M.J.6
Rhoades, E.7
Hackney, D.D.8
Pyle, A.M.9
De La Cruz, E.M.10
-
43
-
-
0032562239
-
The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide
-
Lorsch, J. R. and Herschlag, D. (1998) The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide. Biochemistry, 37, 2180-2193.
-
(1998)
Biochemistry
, vol.37
, pp. 2180-2193
-
-
Lorsch, J.R.1
Herschlag, D.2
-
44
-
-
0033580840
-
Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase
-
Iost, I., Dreyfus, M. and Linder, P. (1999) Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase. J. Biol. Chem., 274, 17677-17683.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17677-17683
-
-
Iost, I.1
Dreyfus, M.2
Linder, P.3
-
45
-
-
67949115632
-
A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN
-
Karow, A. R. and Klostermeier, D. (2009) A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN. Nucleic Acids Res., 37, 4464-4471.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4464-4471
-
-
Karow, A.R.1
Klostermeier, D.2
-
46
-
-
38649106732
-
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
-
Theissen, B., Karow, A. R., Kohler, J., Gubaev, A. and Klostermeier, D. (2008) Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase. Proc. Natl. Acad. Sci. U. S. A., 105, 548-553.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 548-553
-
-
Theissen, B.1
Karow, A.R.2
Kohler, J.3
Gubaev, A.4
Klostermeier, D.5
-
47
-
-
84921334101
-
DEAD-box RNA helicase domains exhibit a continuum between complete functional independence and high thermodynamic coupling in nucleotide and RNA duplex recognition
-
Samatanga, B. and Klostermeier, D. (2014) DEAD-box RNA helicase domains exhibit a continuum between complete functional independence and high thermodynamic coupling in nucleotide and RNA duplex recognition. Nucleic Acids Res., 42, 10644-10654.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 10644-10654
-
-
Samatanga, B.1
Klostermeier, D.2
-
48
-
-
54549123661
-
The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity
-
Linden, M. H., Hartmann, R. K. and Klostermeier, D. (2008) The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity. Nucleic Acids Res., 36, 5800-5811.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5800-5811
-
-
Linden, M.H.1
Hartmann, R.K.2
Klostermeier, D.3
-
49
-
-
84861385163
-
ATP utilization and RNA conformational rearrangement by DEAD-box proteins
-
Henn, A., Bradley, M. J. and De La Cruz, E. M. (2012) ATP utilization and RNA conformational rearrangement by DEAD-box proteins. Annu. Rev. Biophys., 41, 247-267.
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 247-267
-
-
Henn, A.1
Bradley, M.J.2
De La Cruz, E.M.3
-
50
-
-
0037133527
-
Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA
-
Polach, K. J. and Uhlenbeck, O. C. (2002) Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA. Biochemistry, 41, 3693-3702.
-
(2002)
Biochemistry
, vol.41
, pp. 3693-3702
-
-
Polach, K.J.1
Uhlenbeck, O.C.2
-
51
-
-
0024967639
-
Birth of the D-E-A-D box
-
Linder, P., Lasko, P. F., Ashburner, M., Leroy, P., Nielsen, P. J., Nishi, K., Schnier, J. and Slonimski, P. P. (1989) Birth of the D-E-A-D box. Nature, 337, 121-122.
-
(1989)
Nature
, vol.337
, pp. 121-122
-
-
Linder, P.1
Lasko, P.F.2
Ashburner, M.3
Leroy, P.4
Nielsen, P.J.5
Nishi, K.6
Schnier, J.7
Slonimski, P.P.8
-
52
-
-
0016802949
-
The contents of adenine nucleotides, phosphagens and some glycolytic intermediates in resting muscles from vertebrates and invertebrates
-
Beis, I. and Newsholme, E. A. (1975) The contents of adenine nucleotides, phosphagens and some glycolytic intermediates in resting muscles from vertebrates and invertebrates. Biochem. J., 152, 23-32.
-
(1975)
Biochem. J.
, vol.152
, pp. 23-32
-
-
Beis, I.1
Newsholme, E.A.2
-
53
-
-
79956300418
-
The Dbp5 cycle at the nuclear pore complex during mRNA export II: Nucleotide cycling and mRNP remodeling by Dbp5 are controlled by Nup159 and Gle1
-
Noble, K. N., Tran, E. J., Alcazar-Roman, A. R., Hodge, C. A., Cole, C. N. and Wente, S. R. (2011) The Dbp5 cycle at the nuclear pore complex during mRNA export II: nucleotide cycling and mRNP remodeling by Dbp5 are controlled by Nup159 and Gle1. Genes Dev., 25, 1065-1077.
-
(2011)
Genes Dev.
, vol.25
, pp. 1065-1077
-
-
Noble, K.N.1
Tran, E.J.2
Alcazar-Roman, A.R.3
Hodge, C.A.4
Cole, C.N.5
Wente, S.R.6
-
54
-
-
84857125476
-
Structural organization of DNA in chlorella viruses
-
Wulfmeyer, T., Polzer, C., Hiepler, G., Hamacher, K., Shoeman, R., Dunigan, D. D., Van Etten, J. L., Lolicato, M., Moroni, A., Thiel, G. et al. (2012) Structural organization of DNA in chlorella viruses. PLoS One, 7, e30133.
-
(2012)
PLoS One
, vol.7
, pp. e30133
-
-
Wulfmeyer, T.1
Polzer, C.2
Hiepler, G.3
Hamacher, K.4
Shoeman, R.5
Dunigan, D.D.6
Van Etten, J.L.7
Lolicato, M.8
Moroni, A.9
Thiel, G.10
-
55
-
-
77954287478
-
Protein annotation and modelling servers at University College London
-
Buchan, D. W., Ward, S. M., Lobley, A. E., Nugent, T. C., Bryson, K. and Jones, D. T. (2010) Protein annotation and modelling servers at University College London. Nucleic Acids Res., 38, W563-W568.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W563-W568
-
-
Buchan, D.W.1
Ward, S.M.2
Lobley, A.E.3
Nugent, T.C.4
Bryson, K.5
Jones, D.T.6
-
56
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants
-
Santoro, M. M. and Bolen, D. W. (1988) Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants. Biochemistry, 27, 8063-8068.
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
57
-
-
0025128098
-
Fluorescence and NMR investigations on the ligand binding properties of adenylate kinases
-
Reinstein, J., Vetter, I. R., Schlichting, I., Rosch, P., Wittinghofer, A. and Goody, R. S. (1990) Fluorescence and NMR investigations on the ligand binding properties of adenylate kinases. Biochemistry, 29, 7440-7450.
-
(1990)
Biochemistry
, vol.29
, pp. 7440-7450
-
-
Reinstein, J.1
Vetter, I.R.2
Schlichting, I.3
Rosch, P.4
Wittinghofer, A.5
Goody, R.S.6
-
58
-
-
0029880341
-
Evaluation of human immunodeficiency virus type 1 reverse transcriptase primer tRNA binding by fluorescence spectroscopy: Specificity and comparison to primer/template binding
-
Thrall, S. H., Reinstein, J., Wohrl, B. M. and Goody, R. S. (1996) Evaluation of human immunodeficiency virus type 1 reverse transcriptase primer tRNA binding by fluorescence spectroscopy: specificity and comparison to primer/template binding. Biochemistry, 35, 4609-4618.
-
(1996)
Biochemistry
, vol.35
, pp. 4609-4618
-
-
Thrall, S.H.1
Reinstein, J.2
Wohrl, B.M.3
Goody, R.S.4
-
59
-
-
84934444345
-
Duplex unwinding and RNP remodeling with RNA helicases
-
Jankowsky, E. and Fairman, M. E. (2008) Duplex unwinding and RNP remodeling with RNA helicases. Methods Mol. Biol., 488, 343-355.
-
(2008)
Methods Mol. Biol.
, vol.488
, pp. 343-355
-
-
Jankowsky, E.1
Fairman, M.E.2
-
60
-
-
0029902679
-
Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
-
Kuzmic, P. (1996) Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. Anal. Biochem., 237, 260-273.
-
(1996)
Anal. Biochem.
, vol.237
, pp. 260-273
-
-
Kuzmic, P.1
-
61
-
-
71549142265
-
DynaFit - A software package for enzymology
-
Kuzmic, P. (2009) DynaFit-a software package for enzymology. Methods Enzymol., 467, 247-280.
-
(2009)
Methods Enzymol.
, vol.467
, pp. 247-280
-
-
Kuzmic, P.1
-
62
-
-
0016773118
-
A reactive arginine in adenylate kinase
-
Berghauser, J. (1975) A reactive arginine in adenylate kinase. Biochim. Biophys. Acta, 397, 370-376.
-
(1975)
Biochim. Biophys. Acta
, vol.397
, pp. 370-376
-
-
Berghauser, J.1
-
63
-
-
0035793721
-
The chaperone function of ClpB from Thermus thermophilus depends on allosteric interactions of its two ATP-binding sites
-
Schlee, S., Groemping, Y., Herde, P., Seidel, R. and Reinstein, J. (2001) The chaperone function of ClpB from Thermus thermophilus depends on allosteric interactions of its two ATP-binding sites. J. Mol. Biol., 306, 889-899.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 889-899
-
-
Schlee, S.1
Groemping, Y.2
Herde, P.3
Seidel, R.4
Reinstein, J.5
-
64
-
-
84877923560
-
DEAD-box helicases as integrators of RNA, nucleotide and protein binding
-
Putnam, A. A. and Jankowsky, E. (2013) DEAD-box helicases as integrators of RNA, nucleotide and protein binding. Biochim. Biophys. Acta, 1829, 884-893.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 884-893
-
-
Putnam, A.A.1
Jankowsky, E.2
-
65
-
-
0031543338
-
A set of constructed type spectra for the practical estimation of peptide secondary structure from circular dichroism
-
Reed, J. and Reed, T. A. (1997) A set of constructed type spectra for the practical estimation of peptide secondary structure from circular dichroism. Anal. Biochem., 254, 36-40.
-
(1997)
Anal. Biochem.
, vol.254
, pp. 36-40
-
-
Reed, J.1
Reed, T.A.2
-
66
-
-
0020674810
-
New ribose-modified fluorescent analogs of adenine and guanine nucleotides available as substrates for various enzymes
-
Hiratsuka, T. (1983) New ribose-modified fluorescent analogs of adenine and guanine nucleotides available as substrates for various enzymes. Biochim. Biophys. Acta, 742, 496-508.
-
(1983)
Biochim. Biophys. Acta
, vol.742
, pp. 496-508
-
-
Hiratsuka, T.1
-
67
-
-
12344279980
-
Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA
-
Talavera, M. A. and De La Cruz, E. M. (2005) Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA. Biochemistry, 44, 959-970.
-
(2005)
Biochemistry
, vol.44
, pp. 959-970
-
-
Talavera, M.A.1
De La Cruz, E.M.2
-
68
-
-
70350734536
-
Nucleotide binding and allosteric modulation of the second AAA+ domain of ClpB probed by transient kinetic studies
-
Werbeck, N. D., Kellner, J. N., Barends, T. R. and Reinstein, J. (2009) Nucleotide binding and allosteric modulation of the second AAA+ domain of ClpB probed by transient kinetic studies. Biochemistry, 48, 7240-7250.
-
(2009)
Biochemistry
, vol.48
, pp. 7240-7250
-
-
Werbeck, N.D.1
Kellner, J.N.2
Barends, T.R.3
Reinstein, J.4
-
69
-
-
38349186157
-
Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype
-
Elles, L. M. and Uhlenbeck, O. C. (2008) Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype. Nucleic Acids Res., 36, 41-50.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 41-50
-
-
Elles, L.M.1
Uhlenbeck, O.C.2
-
70
-
-
0027494565
-
The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
-
Pause, A., Methot, N. and Sonenberg, N. (1993) The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis. Mol. Cell. Biol., 13, 6789-6798.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 6789-6798
-
-
Pause, A.1
Methot, N.2
Sonenberg, N.3
-
71
-
-
33847652952
-
A DEAD protein that activates intron self-splicing without unwinding RNA
-
Solem, A., Zingler, N. and Pyle, A. M. (2006) A DEAD protein that activates intron self-splicing without unwinding RNA. Mol. Cell, 24, 611-617.
-
(2006)
Mol. Cell
, vol.24
, pp. 611-617
-
-
Solem, A.1
Zingler, N.2
Pyle, A.M.3
-
72
-
-
56749093106
-
Differential RNA-dependent ATPase activities of four rRNA processing yeast DEAD-box proteins
-
Garcia, I. and Uhlenbeck, O. C. (2008) Differential RNA-dependent ATPase activities of four rRNA processing yeast DEAD-box proteins. Biochemistry, 47, 12562-12573.
-
(2008)
Biochemistry
, vol.47
, pp. 12562-12573
-
-
Garcia, I.1
Uhlenbeck, O.C.2
-
73
-
-
79960724199
-
From unwinding to clamping - The DEAD box RNA helicase family
-
Linder, P. and Jankowsky, E. (2011) From unwinding to clamping-the DEAD box RNA helicase family. Nat. Rev. Mol. Cell. Biol., 12, 505-516.
-
(2011)
Nat. Rev. Mol. Cell. Biol.
, vol.12
, pp. 505-516
-
-
Linder, P.1
Jankowsky, E.2
-
74
-
-
79953675393
-
eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism
-
Hilbert, M., Kebbel, F., Gubaev, A. and Klostermeier, D. (2011) eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism. Nucleic Acids Res., 39, 2260-2270.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2260-2270
-
-
Hilbert, M.1
Kebbel, F.2
Gubaev, A.3
Klostermeier, D.4
-
75
-
-
84936796063
-
Crystal structure, mutational analysis and RNA-dependent ATPase activity of the yeast DEAD-box pre-mRNA splicing factor Prp28
-
Jacewicz, A., Schwer, B., Smith, P. and Shuman, S. (2014) Crystal structure, mutational analysis and RNA-dependent ATPase activity of the yeast DEAD-box pre-mRNA splicing factor Prp28. Nucleic Acids Res., 42, 12885-12898.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12885-12898
-
-
Jacewicz, A.1
Schwer, B.2
Smith, P.3
Shuman, S.4
-
76
-
-
33845967782
-
Authentic interdomain communication in an RNA helicase reconstituted by expressed protein ligation of two helicase domains
-
Karow, A. R., Theissen, B. and Klostermeier, D. (2007) Authentic interdomain communication in an RNA helicase reconstituted by expressed protein ligation of two helicase domains. FEBS J., 274, 463-473.
-
(2007)
FEBS J.
, vol.274
, pp. 463-473
-
-
Karow, A.R.1
Theissen, B.2
Klostermeier, D.3
-
77
-
-
0033214805
-
Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins
-
Kossen, K. and Uhlenbeck, O. C. (1999) Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res., 27, 3811-3820.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3811-3820
-
-
Kossen, K.1
Uhlenbeck, O.C.2
-
78
-
-
0032387820
-
Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA
-
Tsu, C. A. and Uhlenbeck, O. C. (1998) Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA. Biochemistry, 37, 16989-16996.
-
(1998)
Biochemistry
, vol.37
, pp. 16989-16996
-
-
Tsu, C.A.1
Uhlenbeck, O.C.2
-
79
-
-
84907826095
-
Asp52 in combination with Asp398 plays a critical role in ATP hydrolysis of chaperonin GroEL
-
Koike-Takeshita, A., Mitsuoka, K. and Taguchi, H. (2014) Asp52 in combination with Asp398 plays a critical role in ATP hydrolysis of chaperonin GroEL. J. Biol. Chem., 289, 30005-30011.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 30005-30011
-
-
Koike-Takeshita, A.1
Mitsuoka, K.2
Taguchi, H.3
-
80
-
-
84874433733
-
Regulation of small GTPases by GEFs, GAPs, and GDIs
-
Cherfils, J. and Zeghouf, M. (2013) Regulation of small GTPases by GEFs, GAPs, and GDIs. Physiol. Rev., 93, 269-309.
-
(2013)
Physiol. Rev.
, vol.93
, pp. 269-309
-
-
Cherfils, J.1
Zeghouf, M.2
-
81
-
-
0036656168
-
Exchange factors, effectors, GAPs and motor proteins: Common thermodynamic and kinetic principles for different functions
-
Goody, R. S. and Hofmann-Goody, W. (2002) Exchange factors, effectors, GAPs and motor proteins: common thermodynamic and kinetic principles for different functions. Eur. Biophys. J., 31, 268-274.
-
(2002)
Eur. Biophys. J.
, vol.31
, pp. 268-274
-
-
Goody, R.S.1
Hofmann-Goody, W.2
-
82
-
-
47749123500
-
Crystal structure of the yeast eIF4A-eIF4G complex: An RNA-helicase controlled by protein-protein interactions
-
Schutz, P., Bumann, M., Oberholzer, A. E., Bieniossek, C., Trachsel, H., Altmann, M. and Baumann, U. (2008) Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions. Proc. Natl. Acad. Sci. U. S. A., 105, 9564-9569.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 9564-9569
-
-
Schutz, P.1
Bumann, M.2
Oberholzer, A.E.3
Bieniossek, C.4
Trachsel, H.5
Altmann, M.6
Baumann, U.7
-
83
-
-
84903974069
-
eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle
-
Harms, U., Andreou, A. Z., Gubaev, A. and Klostermeier, D. (2014) eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle. Nucleic Acids Res., 42, 7911-7922.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 7911-7922
-
-
Harms, U.1
Andreou, A.Z.2
Gubaev, A.3
Klostermeier, D.4
-
84
-
-
79954598438
-
A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export
-
Montpetit, B., Thomsen, N. D., Helmke, K. J., Seeliger, M. A., Berger, J. M. and Weis, K. (2011) A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export. Nature, 472, 238-242.
-
(2011)
Nature
, vol.472
, pp. 238-242
-
-
Montpetit, B.1
Thomsen, N.D.2
Helmke, K.J.3
Seeliger, M.A.4
Berger, J.M.5
Weis, K.6
-
85
-
-
79958071606
-
Regulation of the Dbp5 ATPase cycle in mRNP remodeling at the nuclear pore: A lively new paradigm for DEAD-box proteins
-
Ledoux, S. and Guthrie, C. (2011) Regulation of the Dbp5 ATPase cycle in mRNP remodeling at the nuclear pore: a lively new paradigm for DEAD-box proteins. Genes Dev., 25, 1109-1114.
-
(2011)
Genes Dev.
, vol.25
, pp. 1109-1114
-
-
Ledoux, S.1
Guthrie, C.2
-
86
-
-
84892717305
-
DEAD-box helicases form nucleotide-dependent, long-lived complexes with RNA
-
Liu, F., Putnam, A. A. and Jankowsky, E. (2014) DEAD-box helicases form nucleotide-dependent, long-lived complexes with RNA. Biochemistry, 53, 423-433.
-
(2014)
Biochemistry
, vol.53
, pp. 423-433
-
-
Liu, F.1
Putnam, A.A.2
Jankowsky, E.3
|