-
1
-
-
3943080710
-
The molecular mechanics of eukaryotic translation
-
Kapp,L.D. and Lorsch,J.R. (2004) The molecular mechanics of eukaryotic translation. Annu. Rev. Biochem., 73, 657-704.
-
(2004)
Annu. Rev. Biochem.
, vol.73
, pp. 657-704
-
-
Kapp, L.D.1
Lorsch, J.R.2
-
2
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson,R.J., Hellen,C.U. and Pestova,T.V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol., 11, 113-127.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
3
-
-
70350089113
-
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
-
Hilbert,M., Karow,A.R. and Klostermeier,D. (2009) The mechanism of ATP-dependent RNA unwinding by DEAD box proteins. Biol. Chem., 390, 1237-1250.
-
(2009)
Biol. Chem.
, vol.390
, pp. 1237-1250
-
-
Hilbert, M.1
Karow, A.R.2
Klostermeier, D.3
-
4
-
-
0040142238
-
Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A
-
Rogers,G.W. Jr, Richter,N.J. and Merrick,W.C. (1999) Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A. J. Biol. Chem., 274, 12236-12244.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 12236-12244
-
-
Rogers Jr., G.W.1
Richter, N.J.2
Merrick, W.C.3
-
5
-
-
0036048086
-
eIF4A: The godfather of the DEAD box helicases
-
Rogers,G.W. Jr, Komar,A.A. and Merrick,W.C. (2002) eIF4A: the godfather of the DEAD box helicases. Prog. Nucleic Acid Res. Mol. Biol., 72, 307-331.
-
(2002)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.72
, pp. 307-331
-
-
Rogers Jr., G.W.1
Komar, A.A.2
Merrick, W.C.3
-
6
-
-
0035903136
-
Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F
-
Rogers,G.W. Jr, Richter,N.J., Lima,W.F. and Merrick,W.C. (2001) Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F. J. Biol. Chem., 276, 30914-30922.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 30914-30922
-
-
Rogers Jr., G.W.1
Richter, N.J.2
Lima, W.F.3
Merrick, W.C.4
-
7
-
-
12544253991
-
Interaction between the NH2-terminal domain of eIF4A and the central domain of eIF4G modulates RNA-stimulated ATPase activity
-
Korneeva,N.L., First,E.A., Benoit,C.A. and Rhoads,R.E. (2005) Interaction between the NH2-terminal domain of eIF4A and the central domain of eIF4G modulates RNA-stimulated ATPase activity. J. Biol. Chem., 280, 1872-1881.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 1872-1881
-
-
Korneeva, N.L.1
First, E.A.2
Benoit, C.A.3
Rhoads, R.E.4
-
8
-
-
52949097997
-
Interactions between eIF4AI and its accessory factors eIF4B and eIF4H
-
Rozovsky,N., Butterworth,A.C. and Moore,M.J. (2008) Interactions between eIF4AI and its accessory factors eIF4B and eIF4H. RNA, 14, 2136-2148.
-
(2008)
RNA
, vol.14
, pp. 2136-2148
-
-
Rozovsky, N.1
Butterworth, A.C.2
Moore, M.J.3
-
9
-
-
0035032444
-
The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5′ secondary structure
-
DOI 10.1017/S135583820100108X
-
Svitkin,Y.V., Pause,A., Haghighat,A., Pyronnet,S., Witherell,G., Belsham,G.J. and Sonenberg,N. (2001) The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5′ secondary structure. RNA, 7, 382-394. (Pubitemid 32381914)
-
(2001)
RNA
, vol.7
, Issue.3
, pp. 382-394
-
-
Svitkin, Y.V.1
Pause, A.2
Haghighat, A.3
Pyronnet, S.4
Witherell, G.5
Belsham, G.J.6
Sonenberg, N.7
-
10
-
-
0032562239
-
The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide
-
Lorsch,J.R. and Herschlag,D. (1998) The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide. Biochemistry, 37, 2180-2193.
-
(1998)
Biochemistry
, vol.37
, pp. 2180-2193
-
-
Lorsch, J.R.1
Herschlag, D.2
-
11
-
-
0032562221
-
The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes
-
Lorsch,J.R. and Herschlag,D. (1998) The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes. Biochemistry, 37, 2194-2206.
-
(1998)
Biochemistry
, vol.37
, pp. 2194-2206
-
-
Lorsch, J.R.1
Herschlag, D.2
-
12
-
-
0026680746
-
Mutational analysis of a DEAD box RNA helicase: The mammalian translation initiation factor eIF-4A
-
Pause,A. and Sonenberg,N. (1992) Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A. EMBO J., 11, 2643-2654.
-
(1992)
EMBO J.
, vol.11
, pp. 2643-2654
-
-
Pause, A.1
Sonenberg, N.2
-
13
-
-
0027494565
-
The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
-
Pause,A., Methot,N. and Sonenberg,N. (1993) The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis. Mol. Cell. Biol., 13, 6789-6798.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 6789-6798
-
-
Pause, A.1
Methot, N.2
Sonenberg, N.3
-
14
-
-
0032763657
-
Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase
-
Johnson,E.R. and McKay,D.B. (1999) Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase. RNA, 5, 1526-1534.
-
(1999)
RNA
, vol.5
, pp. 1526-1534
-
-
Johnson, E.R.1
McKay, D.B.2
-
15
-
-
0010456859
-
Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae - The prototype of the DEAD box protein family
-
DOI 10.1016/S0969-2126(99)80088-4
-
Benz,J., Trachsel,H. and Baumann,U. (1999) Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae - the prototype of the DEAD box protein family. Structure, 7, 671-679. (Pubitemid 29277420)
-
(1999)
Structure
, vol.7
, Issue.6
, pp. 671-679
-
-
Benz, J.1
Trachsel, H.2
Baumann, U.3
-
16
-
-
0034700086
-
Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase
-
Caruthers,J.M., Johnson,E.R. and McKay,D.B. (2000) Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase. Proc. Natl Acad. Sci. USA, 97, 13080-13085.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13080-13085
-
-
Caruthers, J.M.1
Johnson, E.R.2
McKay, D.B.3
-
17
-
-
33646017369
-
Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa
-
Sengoku,T., Nureki,O., Nakamura,A., Kobayashi,S. and Yokoyama,S. (2006) Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell, 125, 287-300.
-
(2006)
Cell
, vol.125
, pp. 287-300
-
-
Sengoku, T.1
Nureki, O.2
Nakamura, A.3
Kobayashi, S.4
Yokoyama, S.5
-
18
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA
-
Andersen,C.B., Ballut,L., Johansen,J.S., Chamieh,H., Nielsen,K.H., Oliveira,C.L., Pedersen,J.S., Seraphin,B., Le Hir,H. and Andersen,G.R. (2006) Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science, 313, 1968-1972.
-
(2006)
Science
, vol.313
, pp. 1968-1972
-
-
Andersen, C.B.1
Ballut, L.2
Johansen, J.S.3
Chamieh, H.4
Nielsen, K.H.5
Oliveira, C.L.6
Pedersen, J.S.7
Seraphin, B.8
Le Hir, H.9
Andersen, G.R.10
-
19
-
-
33747182255
-
The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on mRNA
-
DOI 10.1016/j.cell.2006.08.006, PII S0092867406010270
-
Bono,F., Ebert,J., Lorentzen,E. and Conti,E. (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell, 126, 713-725. (Pubitemid 44233638)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
20
-
-
58149092125
-
Mechanism of ATP turnover inhibition in the EJC
-
Nielsen,K.H., Chamieh,H., Andersen,C.B., Fredslund,F., Hamborg,K., Le Hir,H. and Andersen,G.R. (2008) Mechanism of ATP turnover inhibition in the EJC. RNA, 15, 67-75.
-
(2008)
RNA
, vol.15
, pp. 67-75
-
-
Nielsen, K.H.1
Chamieh, H.2
Andersen, C.B.3
Fredslund, F.4
Hamborg, K.5
Le Hir, H.6
Andersen, G.R.7
-
21
-
-
67449105353
-
The DExD/H-box RNA helicase DDX19 is regulated by an alpha-helical switch
-
Collins,R., Karlberg,T., Lehtio,L., Schutz,P., van den Berg,S., Dahlgren,L.G., Hammarstrom,M., Weigelt,J. and Schuler,H. (2009) The DExD/H-box RNA helicase DDX19 is regulated by an alpha-helical switch. J. Biol. Chem., 284, 10296-10300.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 10296-10300
-
-
Collins, R.1
Karlberg, T.2
Lehtio, L.3
Schutz, P.4
Van Den Berg, S.5
Dahlgren, L.G.6
Hammarstrom, M.7
Weigelt, J.8
Schuler, H.9
-
22
-
-
62049084648
-
The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner
-
von Moeller,H., Basquin,C. and Conti,E. (2009) The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner. Nat. Struct. Mol. Biol., 16, 247-254.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 247-254
-
-
Von Moeller, H.1
Basquin, C.2
Conti, E.3
-
23
-
-
38649106732
-
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
-
Theissen,B., Karow,A.R., Kohler,J., Gubaev,A. and Klostermeier,D. (2008) Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase. Proc. Natl Acad. Sci. USA, 105, 548-553.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 548-553
-
-
Theissen, B.1
Karow, A.R.2
Kohler, J.3
Gubaev, A.4
Klostermeier, D.5
-
24
-
-
70449584733
-
The DEAD-box helicase YxiN maintains a closed conformation during ATP hydrolysis
-
Aregger,R. and Klostermeier,D. (2009) The DEAD-box helicase YxiN maintains a closed conformation during ATP hydrolysis. Biochemistry, 48, 10679-10681.
-
(2009)
Biochemistry
, vol.48
, pp. 10679-10681
-
-
Aregger, R.1
Klostermeier, D.2
-
25
-
-
58149481225
-
ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
-
Liu,F., Putnam,A. and Jankowsky,E. (2008) ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding. Proc. Natl Acad. Sci. USA, 51, 20209-20214.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.51
, pp. 20209-20214
-
-
Liu, F.1
Putnam, A.2
Jankowsky, E.3
-
26
-
-
24944469031
-
Structural basis for the enhancement of eIF4A helicase activity by eIF4G
-
DOI 10.1101/gad.1335305
-
Oberer,M., Marintchev,A. and Wagner,G. (2005) Structural basis for the enhancement of eIF4A helicase activity by eIF4G. Genes Dev., 19, 2212-2223. (Pubitemid 41330322)
-
(2005)
Genes and Development
, vol.19
, Issue.18
, pp. 2212-2223
-
-
Oberer, M.1
Marintchev, A.2
Wagner, G.3
-
27
-
-
59049092956
-
Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation
-
Marintchev,A., Edmonds,K.A., Marintcheva,B., Hendrickson,E., Oberer,M., Suzuki,C., Herdy,B., Sonenberg,N. and Wagner,G. (2009) Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation. Cell, 136, 447-460.
-
(2009)
Cell
, vol.136
, pp. 447-460
-
-
Marintchev, A.1
Edmonds, K.A.2
Marintcheva, B.3
Hendrickson, E.4
Oberer, M.5
Suzuki, C.6
Herdy, B.7
Sonenberg, N.8
Wagner, G.9
-
28
-
-
47749123500
-
Crystal structure of the yeast eIF4A-eIF4G complex: An RNA-helicase controlled by protein-protein interactions
-
Schütz,P., Bumann,M., Oberholzer,A.E., Bieniossek,C., Trachsel,H., Altmann,M. and Baumann,U. (2008) Crystal structure of the yeast eIF4A-eIF4G complex: An RNA-helicase controlled by protein-protein interactions. Proc. Natl Acad. Sci. USA, 105, 9564-9569.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 9564-9569
-
-
Schütz, P.1
Bumann, M.2
Oberholzer, A.E.3
Bieniossek, C.4
Trachsel, H.5
Altmann, M.6
Baumann, U.7
-
29
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier,F.W. (2005) Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif., 41, 207-234.
-
(2005)
Protein Expr. Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
30
-
-
27144505097
-
Protein identification and analysis tools on the ExPASy Server
-
Walker,J.M. (ed.), Humana Press
-
Gasteiger,E., Hoogland,C., Gattiker,A., Duvaud,S., Wilkins,M.R., Appel,R.D. and Bairoch,A. (2005) Protein identification and analysis tools on the ExPASy Server. In Walker,J.M. (ed.), The Proteomics Protocols Handbook. Humana Press, pp. 571-607.
-
(2005)
The Proteomics Protocols Handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
Bairoch, A.7
-
31
-
-
0020674810
-
New ribose-modified fluorescent analogs of adenine and guanine nucleotides available as substrates for various enzymes
-
Hiratsuka,T. (1983) New ribose-modified fluorescent analogs of adenine and guanine nucleotides available as substrates for various enzymes. Biochim. Biophys. Acta, 742, 496-508.
-
(1983)
Biochim. Biophys. Acta
, vol.742
, pp. 496-508
-
-
Hiratsuka, T.1
-
32
-
-
2042536226
-
-
Bergmeyer, H.U. (Hrsg.), Verlag Chemie, Weinheim
-
Adam,H. (1962) Methoden der enzymatischen Analyse. Bergmeyer, H.U. (Hrsg.), Verlag Chemie, Weinheim, pp. 573-577.
-
(1962)
Methoden der Enzymatischen Analyse
, pp. 573-577
-
-
Adam, H.1
-
33
-
-
0028098798
-
Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase
-
DOI 10.1021/bi00193a013
-
Brune,M., Hunter,J.L., Corrie,J.E. and Webb,M.R. (1994) Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase. Biochemistry, 33, 8262-8271. (Pubitemid 24241060)
-
(1994)
Biochemistry
, vol.33
, Issue.27
, pp. 8262-8271
-
-
Brune, M.1
Hunter, J.L.2
Corrie, J.E.T.3
Webb, M.R.4
-
34
-
-
0022961855
-
Rapid kinetic analysis of mechanochemical adenosinetriphosphatases
-
Johnson,K.A. (1986) Rapid kinetic analysis of mechanochemical adenosinetriphosphatases. Methods Enzymol., 134, 677-705.
-
(1986)
Methods Enzymol.
, vol.134
, pp. 677-705
-
-
Johnson, K.A.1
-
35
-
-
69449106505
-
The DNA gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction
-
Gubaev,A., Hilbert,M. and Klostermeier,D. (2009) The DNA gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction. Proc. Natl Acad. Sci. USA, 106, 13278-13283.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 13278-13283
-
-
Gubaev, A.1
Hilbert, M.2
Klostermeier, D.3
-
36
-
-
39649096274
-
The ATPase cycle mechanism of the DEAD-box RNA helicase
-
Henn,A., Cao,W., Hackney,D.D. and De La Cruz,E.M. (2008) The ATPase cycle mechanism of the DEAD-box RNA helicase, DbpA. J. Mol. Biol., 377, 193-205.
-
(2008)
DbpA. J. Mol. Biol.
, vol.377
, pp. 193-205
-
-
Henn, A.1
Cao, W.2
Hackney, D.D.3
De La Cruz, E.M.4
-
37
-
-
67949115632
-
A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN
-
Karow,A.R. and Klostermeier,D. (2009) A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN. Nucleic Acids Res., 37, 4464-4471.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4464-4471
-
-
Karow, A.R.1
Klostermeier, D.2
-
38
-
-
0037216626
-
The transformation suppressor Pdcd4 is a novel eukaryotic translation initiation factor 4A binding protein that inhibits translation
-
Yang,H.S., Jansen,A.P., Komar,A.A., Zheng,X., Merrick,W.C., Costes,S., Lockett,S.J., Sonenberg,N. and Colburn,N.H. (2003) The transformation suppressor Pdcd4 is a novel eukaryotic translation initiation factor 4A binding protein that inhibits translation. Mol. Cell. Biol., 23, 26-37.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 26-37
-
-
Yang, H.S.1
Jansen, A.P.2
Komar, A.A.3
Zheng, X.4
Merrick, W.C.5
Costes, S.6
Lockett, S.J.7
Sonenberg, N.8
Colburn, N.H.9
-
39
-
-
62549164363
-
Crystal structure of the eIF4A-PDCD4 complex
-
Chang,J.H., Cho,Y.H., Sohn,S.Y., Choi,J.M., Kim,A., Kim,Y.C., Jang,S.K. and Cho,Y. (2009) Crystal structure of the eIF4A-PDCD4 complex. Proc. Natl Acad. Sci. USA, 106, 3148-3153.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 3148-3153
-
-
Chang, J.H.1
Cho, Y.H.2
Sohn, S.Y.3
Choi, J.M.4
Kim, A.5
Kim, Y.C.6
Jang, S.K.7
Cho, Y.8
-
40
-
-
0037378193
-
RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis
-
DOI 10.1261/rna.2161303
-
Oguro,A., Ohtsu,T., Svitkin,Y.V., Sonenberg,N. and Nakamura,Y. (2003) RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis. RNA, 9, 394-407. (Pubitemid 36356727)
-
(2003)
RNA
, vol.9
, Issue.4
, pp. 394-407
-
-
Oguro, A.1
Ohtsu, T.2
Svitkin, Y.V.3
Sonenberg, N.4
Nakamura, Y.5
|