메뉴 건너뛰기




Volumn 37, Issue 13, 2009, Pages 4464-4471

A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; DEAD BOX HELICASE YXIN; DEAD BOX PROTEIN; HELICASE; UNCLASSIFIED DRUG;

EID: 67949115632     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp397     Document Type: Article
Times cited : (38)

References (23)
  • 1
    • 33344473656 scopus 로고    scopus 로고
    • The DEAD-box protein family of RNA helicases
    • Cordin,O., Banroques,J., Tanner,N.K. and Linder,P. (2006) The DEAD-box protein family of RNA helicases. Gene, 367, 17-37.
    • (2006) Gene , vol.367 , pp. 17-37
    • Cordin, O.1    Banroques, J.2    Tanner, N.K.3    Linder, P.4
  • 2
    • 33646017369 scopus 로고    scopus 로고
    • Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa
    • Sengoku, T., Nureki,O., Nakamura,A., Kobayashi,S. and Yokoyama,S. (2006) Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell, 25, 287-300.
    • (2006) Cell , vol.25 , pp. 287-300
    • Sengoku, T.1    Nureki, O.2    Nakamura, A.3    Kobayashi, S.4    Yokoyama, S.5
  • 4
    • 33747182255 scopus 로고    scopus 로고
    • The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
    • Bono,F., Ebert,J., Lorentzen,E. and Conti,E. (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell, 126, 713-725.
    • (2006) Cell , vol.126 , pp. 713-725
    • Bono, F.1    Ebert, J.2    Lorentzen, E.3    Conti, E.4
  • 6
    • 62049084648 scopus 로고    scopus 로고
    • The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner
    • von Moeller,H., Basquin,C. and Conti,E. (2009) The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner. Nat. Struct. Mol. Biol., 16, 247-254.
    • (2009) Nat. Struct. Mol. Biol , vol.16 , pp. 247-254
    • von Moeller, H.1    Basquin, C.2    Conti, E.3
  • 7
    • 0037252143 scopus 로고    scopus 로고
    • The Q motif: A newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis
    • Tanner,N.K., Cordin,O., Banroques,J., Doere,M. and Linder,P. (2003) The Q motif: A newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Mol. Cell, 11, 127-138.
    • (2003) Mol. Cell , vol.11 , pp. 127-138
    • Tanner, N.K.1    Cordin, O.2    Banroques, J.3    Doere, M.4    Linder, P.5
  • 8
    • 0026680746 scopus 로고
    • Mutational analysis of a DEAD box RNA helicase: The mammalian translation initiation factor eIF-4A
    • Pause,A. and Sonenberg,N. (1992) Mutational analysis of a DEAD box RNA helicase: The mammalian translation initiation factor eIF-4A. EMBO J. 11, 2643-2654.
    • (1992) EMBO J , vol.11 , pp. 2643-2654
    • Pause, A.1    Sonenberg, N.2
  • 9
    • 0027494565 scopus 로고
    • The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
    • Pause,A., Methot,N. and Sonenberg,N. (1993) The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis. Mol. Cell Biol., 13, 6789-6798.
    • (1993) Mol. Cell Biol , vol.13 , pp. 6789-6798
    • Pause, A.1    Methot, N.2    Sonenberg, N.3
  • 10
    • 0033214805 scopus 로고    scopus 로고
    • Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel subfamily of bacterial DEAD proteins
    • Kossen,K. and Uhlenbeck,O.C. (1999) Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel subfamily of bacterial DEAD proteins. Nucleic Acids Res., 27, 3811-3820.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3811-3820
    • Kossen, K.1    Uhlenbeck, O.C.2
  • 11
    • 33845967782 scopus 로고    scopus 로고
    • Authentic interdomain communication in an RNA helicase reconstituted by expressed protein ligation of two helicase domains
    • Karow,A.R., Theissen,B. and Klostermeier,D. (2007) Authentic interdomain communication in an RNA helicase reconstituted by expressed protein ligation of two helicase domains. FEBS J., 274, 463-473.
    • (2007) FEBS J , vol.274 , pp. 463-473
    • Karow, A.R.1    Theissen, B.2    Klostermeier, D.3
  • 12
    • 38649106732 scopus 로고    scopus 로고
    • Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
    • Theissen,B., Karow,A.R., Kohler,J., Gubaev,A. and Klostermeier,D. (2008) Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase. Proc. Natl Acad. Sci. USA, 105, 548-553.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 548-553
    • Theissen, B.1    Karow, A.R.2    Kohler, J.3    Gubaev, A.4    Klostermeier, D.5
  • 13
    • 37749032415 scopus 로고    scopus 로고
    • The Bacillus subtilis RNA Helicase YxiN is Distended in Solution
    • Wang,S., Overgaard,M.T., Hu,Y. and McKay,D.B. (2007) The Bacillus subtilis RNA Helicase YxiN is Distended in Solution. Biophys. J. 94, L01-L03.
    • (2007) Biophys. J , vol.94
    • Wang, S.1    Overgaard, M.T.2    Hu, Y.3    McKay, D.B.4
  • 14
    • 0024415732 scopus 로고
    • A lysine substitution in the ATP-binding site of eucaryotic initiation factor 4A abrogates nucleotide-binding activity
    • Rozen,F., Pelletier,J., Trachsel,H. and Sonenberg,N. (1989) A lysine substitution in the ATP-binding site of eucaryotic initiation factor 4A abrogates nucleotide-binding activity. Mol. Cell Biol., 9, 4061-4063.
    • (1989) Mol. Cell Biol , vol.9 , pp. 4061-4063
    • Rozen, F.1    Pelletier, J.2    Trachsel, H.3    Sonenberg, N.4
  • 15
    • 39649096274 scopus 로고    scopus 로고
    • The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA
    • Henn,A., Cao,W., Hackney,D.D. and De La Cruz,E.M. (2008) The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA. J. Mol. Biol. 377, 193-205.
    • (2008) J. Mol. Biol , vol.377 , pp. 193-205
    • Henn, A.1    Cao, W.2    Hackney, D.D.3    De La Cruz, E.M.4
  • 16
    • 14244260321 scopus 로고    scopus 로고
    • Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs
    • Rocak,S., Emery,B., Tanner,N.K. and Linder,P. (2005) Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs. Nucleic Acids Res., 33, 999-1009.
    • (2005) Nucleic Acids Res , vol.33 , pp. 999-1009
    • Rocak, S.1    Emery, B.2    Tanner, N.K.3    Linder, P.4
  • 17
    • 23644449094 scopus 로고    scopus 로고
    • Crystal structure and functional analysis of DEAD-box protein Dhh1p
    • Cheng,Z., Coller,J., Parker,R. and Song,H. (2005) Crystal structure and functional analysis of DEAD-box protein Dhh1p. RNA, 11, 1258-1270.
    • (2005) RNA , vol.11 , pp. 1258-1270
    • Cheng, Z.1    Coller, J.2    Parker, R.3    Song, H.4
  • 18
    • 2042536226 scopus 로고
    • Bergmeyer, H.U.Hrsg, Verlag Chemie, Weinheim, pp
    • Adam,H. (1962) Methoden der enzymatischen Analyse. Bergmeyer, H.U.(Hrsg.), Verlag Chemie, Weinheim, pp. 573-577.
    • (1962) Methoden der enzymatischen Analyse , pp. 573-577
    • Adam, H.1
  • 19
    • 0037133527 scopus 로고    scopus 로고
    • Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA
    • Polach,K.J. and Uhlenbeck,O.C. (2002) Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA. Biochemistry, 41, 3693-3702.
    • (2002) Biochemistry , vol.41 , pp. 3693-3702
    • Polach, K.J.1    Uhlenbeck, O.C.2
  • 21
    • 58149481225 scopus 로고    scopus 로고
    • ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
    • Liu,F., Putnam,A. and Jankowsky,E. (2008) ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding. Proc. Natl Acad. Sci. USA, 51, 20209-20214.
    • (2008) Proc. Natl Acad. Sci. USA , vol.51 , pp. 20209-20214
    • Liu, F.1    Putnam, A.2    Jankowsky, E.3
  • 22
    • 0036927393 scopus 로고    scopus 로고
    • The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA
    • Kossen,K., Karginov,F.V. and Uhlenbeck,O.C. (2002) The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. J. Mol. Biol., 324, 625-636.
    • (2002) J. Mol. Biol , vol.324 , pp. 625-636
    • Kossen, K.1    Karginov, F.V.2    Uhlenbeck, O.C.3
  • 23
    • 0036172167 scopus 로고    scopus 로고
    • Geno3D: Automatic comparative molecular modelling of protein
    • Combet,C., Jambon,M., Deleage,G. and Geourjon,C. (2002) Geno3D: automatic comparative molecular modelling of protein. Bioinformatics 18, 213-214.
    • (2002) Bioinformatics , vol.18 , pp. 213-214
    • Combet, C.1    Jambon, M.2    Deleage, G.3    Geourjon, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.