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Volumn 48, Issue 3, 2016, Pages 265-272

Assessment of microbial DNA extraction methods of cadaver soil samples for criminal investigations

Author keywords

cadaver soil; DNA extraction; humic acid; next generation sequencing

Indexed keywords

GENOMIC DNA; HUMIC ACID; RNA 16S;

EID: 84937596901     PISSN: 00450618     EISSN: 1834562X     Source Type: Journal    
DOI: 10.1080/00450618.2015.1063690     Document Type: Article
Times cited : (10)

References (28)
  • 1
    • 84866903134 scopus 로고    scopus 로고
    • Microbes as forensic indicators
    • A.Gunn, S.J.Pitt. Microbes as forensic indicators. Trop Biomed. 2012;29(3):311–330.
    • (2012) Trop Biomed , vol.29 , Issue.3 , pp. 311-330
    • Gunn, A.1    Pitt, S.J.2
  • 2
    • 84921059103 scopus 로고    scopus 로고
    • Potential applications of soil microbial ecology and next-generation sequencing in criminal investigations
    • S.J.Finley, M.E.Benbow, G.T.Javan. Potential applications of soil microbial ecology and next-generation sequencing in criminal investigations. Appl Soil Ecol. 2015;88(1):69–78.10.1016/j.apsoil.2015.01.001
    • (2015) Appl Soil Ecol , vol.88 , Issue.1 , pp. 69-78
    • Finley, S.J.1    Benbow, M.E.2    Javan, G.T.3
  • 3
    • 84899935871 scopus 로고    scopus 로고
    • Limitations and recommendations for successful DNA extraction from forensic soil samples: a review
    • J.M.Young, N.J.Rawlence, L.S.Weyrich, A.Cooper. Limitations and recommendations for successful DNA extraction from forensic soil samples: a review. Sci Justice. 2014;54(3):238–244.10.1016/j.scijus.2014.02.006
    • (2014) Sci Justice , vol.54 , Issue.3 , pp. 238-244
    • Young, J.M.1    Rawlence, N.J.2    Weyrich, L.S.3    Cooper, A.4
  • 4
    • 84896963128 scopus 로고    scopus 로고
    • The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition
    • E.R.Hyde, D.P.Haarmann, A.M.Lynne, S.R.Bucheli, J.F.Petrosino. The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition. PLoS One. 2013;8(10):e77733.10.1371/journal.pone.0077733
    • (2013) PLoS One , vol.8 , Issue.10 , pp. e77733
    • Hyde, E.R.1    Haarmann, D.P.2    Lynne, A.M.3    Bucheli, S.R.4    Petrosino, J.F.5
  • 6
    • 84893387620 scopus 로고    scopus 로고
    • Microbial community functional change during vertebrate carrion decomposition
    • J.L.Pechal, T.L.Crippen, A.M.Tarone, A.J.Lewis, J.K.Tomberlin, M.E.Benbow. Microbial community functional change during vertebrate carrion decomposition. PLoS One. 2013;8(11):e79035.10.1371/journal.pone.0079035
    • (2013) PLoS One , vol.8 , Issue.11 , pp. e79035
    • Pechal, J.L.1    Crippen, T.L.2    Tarone, A.M.3    Lewis, A.J.4    Tomberlin, J.K.5    Benbow, M.E.6
  • 7
    • 84891826092 scopus 로고    scopus 로고
    • The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing
    • J.L.Pechal, T.L.Crippen, M.E.Benbow, A.M.Tarone, S.Dowd, J.K.Tomberlin. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int J Legal Med. 2014;128(1):193–205.10.1007/s00414-013-0872-1
    • (2014) Int J Legal Med , vol.128 , Issue.1 , pp. 193-205
    • Pechal, J.L.1    Crippen, T.L.2    Benbow, M.E.3    Tarone, A.M.4    Dowd, S.5    Tomberlin, J.K.6
  • 8
    • 84939886582 scopus 로고    scopus 로고
    • Microbial communities associated with human decomposition and their potential use as postmortem clocks
    • S.J.Finley, M.E.Benbow, G.T.Javan. Microbial communities associated with human decomposition and their potential use as postmortem clocks. Int J Legal Med. 2014;129(3):623–632.
    • (2014) Int J Legal Med , vol.129 , Issue.3 , pp. 623-632
    • Finley, S.J.1    Benbow, M.E.2    Javan, G.T.3
  • 9
    • 84906055621 scopus 로고    scopus 로고
    • Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans
    • I.Can, G.T.Javan, A.E.Pozhitkov, P.A.Noble. Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans. J Microbiol Methods. 2014;106(1):1–7.10.1016/j.mimet.2014.07.026
    • (2014) J Microbiol Methods , vol.106 , Issue.1 , pp. 1-7
    • Can, I.1    Javan, G.T.2    Pozhitkov, A.E.3    Noble, P.A.4
  • 10
    • 79951809920 scopus 로고    scopus 로고
    • The application of amplicon length heterogeneity PCR (LH-PCR) for monitoring the dynamics of soil microbial communities associated with cadaver decomposition
    • L.I.Moreno, D.Mills, J.Fetscher, K.John-Williams, L.Meadows-Jantz, B.McCord. The application of amplicon length heterogeneity PCR (LH-PCR) for monitoring the dynamics of soil microbial communities associated with cadaver decomposition. J Microbiol Methods. 2011;84(3):388–393.10.1016/j.mimet.2010.11.023
    • (2011) J Microbiol Methods , vol.84 , Issue.3 , pp. 388-393
    • Moreno, L.I.1    Mills, D.2    Fetscher, J.3    John-Williams, K.4    Meadows-Jantz, L.5    McCord, B.6
  • 11
    • 84874827145 scopus 로고    scopus 로고
    • Seasonal necrophagous insect community assembly during vertebrate carrion decomposition
    • M.E.Benbow, A.J.Lewis, J.K.Tomberlin, J.L.Pechal. Seasonal necrophagous insect community assembly during vertebrate carrion decomposition. J Med Entomol. 2013;50(2):440–450.10.1603/ME12194
    • (2013) J Med Entomol , vol.50 , Issue.2 , pp. 440-450
    • Benbow, M.E.1    Lewis, A.J.2    Tomberlin, J.K.3    Pechal, J.L.4
  • 12
    • 84879073061 scopus 로고    scopus 로고
    • An improved method compatible with metagenomic analyses to extract genomic DNA from soils in Tuber melanosporum orchards
    • S.Antony-Babu, C.Murat, A.Deveau, F.Le Tacon, P.Frey-Klett, S.Uroz. An improved method compatible with metagenomic analyses to extract genomic DNA from soils in Tuber melanosporum orchards. J Appl Microbiol. 2013;115(1):163–170.10.1111/jam.2013.115.issue-1
    • (2013) J Appl Microbiol , vol.115 , Issue.1 , pp. 163-170
    • Antony-Babu, S.1    Murat, C.2    Deveau, A.3    Le Tacon, F.4    Frey-Klett, P.5    Uroz, S.6
  • 13
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • R.I.Griffiths, A.S.Whiteley, A.G.O’Donnell, M.J.Bailey. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol. 2000;66(12):5488–5491.10.1128/AEM.66.12.5488-5491.2000
    • (2000) Appl Environ Microbiol , vol.66 , Issue.12 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O’Donnell, A.G.3    Bailey, M.J.4
  • 14
    • 84874111903 scopus 로고    scopus 로고
    • Comparison of commercial kits for the extraction of DNA from paddy soils
    • S.Knauth, H.Schmidt, R.Tippkötter. Comparison of commercial kits for the extraction of DNA from paddy soils. Lett Appl Microbiol. 2013;56(3):222–228.10.1111/lam.12038
    • (2013) Lett Appl Microbiol , vol.56 , Issue.3 , pp. 222-228
    • Knauth, S.1    Schmidt, H.2    Tippkötter, R.3
  • 15
    • 84883360783 scopus 로고    scopus 로고
    • Improvement of short tandem repeat analysis of samples highly contaminated by humic acid
    • S.B.Seo, H.X.Jin, H.Y.Lee, J.Ge, J.L.King, S.H.Lyoo, D.H.Shin, S.D.Lee. Improvement of short tandem repeat analysis of samples highly contaminated by humic acid. J Forensic Leg Med. 2013;20(7):922–928.10.1016/j.jflm.2013.08.001
    • (2013) J Forensic Leg Med , vol.20 , Issue.7 , pp. 922-928
    • Seo, S.B.1    Jin, H.X.2    Lee, H.Y.3    Ge, J.4    King, J.L.5    Lyoo, S.H.6    Shin, D.H.7    Lee, S.D.8
  • 17
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • J.Zhou, M.A.Bruns, J.M.Tiedje. DNA recovery from soils of diverse composition. Appl Environ Microbiol. 1996;62(2):316–322.
    • (1996) Appl Environ Microbiol , vol.62 , Issue.2 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3
  • 18
    • 34447559993 scopus 로고    scopus 로고
    • Improved purification and PCR amplification of DNA from environmental samples
    • Z.Arbeli, C.L.Fuentes. Improved purification and PCR amplification of DNA from environmental samples. FEMS Microbiol Lett. 2007;272(2):269–275.10.1111/fml.2007.272.issue-2
    • (2007) FEMS Microbiol Lett , vol.272 , Issue.2 , pp. 269-275
    • Arbeli, Z.1    Fuentes, C.L.2
  • 19
    • 0035129246 scopus 로고    scopus 로고
    • Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments
    • D.N.Miller. Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments. J Microbiol Methods. 2001;44(1):49–58.10.1016/S0167-7012(00)00228-1
    • (2001) J Microbiol Methods , vol.44 , Issue.1 , pp. 49-58
    • Miller, D.N.1
  • 20
    • 84892368136 scopus 로고    scopus 로고
    • Assessment of five soil DNA extraction methods and a rapid laboratory-developed method for quality soil DNA extraction for 16S rDNA-based amplification and library construction
    • K.Sagar, S.P.Singh, K.K.Goutam, B.K.Konwar. Assessment of five soil DNA extraction methods and a rapid laboratory-developed method for quality soil DNA extraction for 16S rDNA-based amplification and library construction. J Microbiol Methods. 2014;97(1):68–73.10.1016/j.mimet.2013.11.008
    • (2014) J Microbiol Methods , vol.97 , Issue.1 , pp. 68-73
    • Sagar, K.1    Singh, S.P.2    Goutam, K.K.3    Konwar, B.K.4
  • 23
    • 84947923960 scopus 로고    scopus 로고
    • DNA extraction method selection for agricultural soil using TOPSIS multiple criteria decision-making model
    • S.Pakpour, S.V.Olishevska, S.O.Prasher, A.S.Milani, M.R.Chénier. DNA extraction method selection for agricultural soil using TOPSIS multiple criteria decision-making model. Am J Mol Biol. 2013;3(4):215–228.
    • (2013) Am J Mol Biol , vol.3 , Issue.4 , pp. 215-228
    • Pakpour, S.1    Olishevska, S.V.2    Prasher, S.O.3    Milani, A.S.4    Chénier, M.R.5
  • 24
    • 18844412096 scopus 로고    scopus 로고
    • Humic substances–compounds of still unknown structure: applications in agriculture, industry, environment, and biomedicine
    • E.M.Peña-Méndez, J.Havel, J.Patočka. Humic substances–compounds of still unknown structure: applications in agriculture, industry, environment, and biomedicine. J. Appl. Biomed. 2005;3(1):13–24.
    • (2005) J. Appl. Biomed , vol.3 , Issue.1 , pp. 13-24
    • Peña-Méndez, E.M.1    Havel, J.2    Patočka, J.3
  • 26
    • 0008048504 scopus 로고
    • Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
    • D.J.Lane, B.Pace, G.J.Olsen, D.A.Stahl, M.L.Sogin, N.R.Pace. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA. 1985;82(20):6955–6959.10.1073/pnas.82.20.6955
    • (1985) Proc Natl Acad Sci USA , vol.82 , Issue.20 , pp. 6955-6959
    • Lane, D.J.1    Pace, B.2    Olsen, G.J.3    Stahl, D.A.4    Sogin, M.L.5    Pace, N.R.6
  • 27
    • 84914179053 scopus 로고    scopus 로고
    • Vienna: R Foundation for Statistical Computing
    • R Core Team. A language and environment for statistical computing. Vienna: R Foundation for Statistical Computing; 2014. Available from: http://www.R-project.org
    • (2014) A language and environment for statistical computing
  • 28
    • 0035065898 scopus 로고    scopus 로고
    • A strategy for optimizing quality and quantity of DNA extracted from soil
    • H.Bürgmann, M.Pesaro, F.Widmer, J.Zeyer. A strategy for optimizing quality and quantity of DNA extracted from soil. J Microbiol Methods. 2001;45(1):7–20.10.1016/S0167-7012(01)00213-5
    • (2001) J Microbiol Methods , vol.45 , Issue.1 , pp. 7-20
    • Bürgmann, H.1    Pesaro, M.2    Widmer, F.3    Zeyer, J.4


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