메뉴 건너뛰기




Volumn 34, Issue 1, 2015, Pages 284-297

Supervised Multi-view Canonical Correlation Analysis (sMVCCA): Integrating histologic and proteomic features for predicting recurrent prostate cancer

Author keywords

Data fusion; digital pathology; dimensionality reduction; mass spectrometry; prostate cancer; proteomics

Indexed keywords

CLUSTERING ALGORITHMS; CORRELATION METHODS; DATA FUSION; DATA INTEGRATION; DATA MINING; DECISION TREES; DISEASES; FORECASTING; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PROTEINS; UROLOGY;

EID: 84937559607     PISSN: 02780062     EISSN: 1558254X     Source Type: Journal    
DOI: 10.1109/TMI.2014.2355175     Document Type: Article
Times cited : (91)

References (75)
  • 1
    • 79955474695 scopus 로고    scopus 로고
    • Developments for a growing Japanese patient popu lation: Facilitating new technologies for future health care
    • H. Kato et al., "Developments for a growing Japanese patient popu lation: Facilitating new technologies for future health care," J. Pro-teomics vol. 74, no. 6, pp. 759-764, 2011.
    • (2011) J. Pro-teomics , vol.74 , Issue.6 , pp. 759-764
    • Kato, H.1
  • 2
    • 33749862787 scopus 로고    scopus 로고
    • Biomarkers in cardiovascular disease: Integrating pathophysiology into clinical practice
    • S. V. Parikh and J. A. De Lemos, "Biomarkers in cardiovascular disease: Integrating pathophysiology into clinical practice," Am. J. Med. Sci., vol. 332, no. 4, pp. 186-197, 2006.
    • (2006) Am. J. Med. Sci. , vol.332 , Issue.4 , pp. 186-197
    • Parikh, S.V.1    De Lemos, J.A.2
  • 3
    • 23744438569 scopus 로고    scopus 로고
    • Rationale and methods of the integrated biomarker and imaging study (IBIS): Combining invasive and non-invasive imaging with biomarkers to detect subclinical atherosclerosis and assess coronary lesion biology
    • C. A. V. Mieghem et al., "Rationale and methods of the integrated biomarker and imaging study (IBIS): Combining invasive and non-invasive imaging with biomarkers to detect subclinical atherosclerosis and assess coronary lesion biology," Int. J. Cardiovasc. Imag. vol. 21, no. 4, pp. 425-441, 2005.
    • (2005) Int. J. Cardiovasc. Imag. , vol.21 , Issue.4 , pp. 425-441
    • Mieghem, C.A.V.1
  • 4
    • 84861559991 scopus 로고    scopus 로고
    • Selection of disease-specific biomarkers by integrating inflammatory mediators with clinical informatics in aecopd patients: A preliminary study
    • H. Chen, Z. Song, M. Qian, C. Bai, and X. Wang, "Selection of disease-specific biomarkers by integrating inflammatory mediators with clinical informatics in aecopd patients: A preliminary study," J. Cellular Molecular Med., vol. 16, no. 6, pp. 1286-1297, 2012.
    • (2012) J. Cellular Molecular Med. , vol.16 , Issue.6 , pp. 1286-1297
    • Chen, H.1    Song, Z.2    Qian, M.3    Bai, C.4    Wang, X.5
  • 5
    • 83655203485 scopus 로고    scopus 로고
    • Supervised regularized canonical correlation analysis: Integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery
    • A. Golugula, G. Lee, S. R. Master, M. D. Feldman, J. E. Tomaszewski, D. W. Speicher, and A. Madabhushi, "Supervised regularized canonical correlation analysis: Integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery," BMC Bioinformat., vol. 12, no. 1, p. 483, 2011.
    • (2011) BMC Bioinformat. , vol.12 , Issue.1 , pp. 483
    • Golugula, A.1    Lee, G.2    Master, S.R.3    Feldman, M.D.4    Tomaszewski, J.E.5    Speicher, D.W.6    Madabhushi, A.7
  • 6
    • 49249124314 scopus 로고    scopus 로고
    • Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies
    • Apr.
    • G. Lee, C. Rodriguez, and A. Madabhushi, "Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies," IEEE Trans. Comp. Biol. Bioinf., vol. 5, no. 3, pp. 368-384, Apr. 2008.
    • (2008) IEEE Trans. Comp. Biol. Bioinf. , vol.5 , Issue.3 , pp. 368-384
    • Lee, G.1    Rodriguez, C.2    Madabhushi, A.3
  • 7
    • 0037937269 scopus 로고    scopus 로고
    • Multiwavelet grading of pathological images of prostate
    • Jun.
    • K. Jafari-Khouzani and H. Soltanian-Zadeh, "Multiwavelet grading of pathological images of prostate," IEEE Trans. Biomed. Eng., vol. 50, no. 6, pp. 697-704, Jun. 2003.
    • (2003) IEEE Trans. Biomed. Eng. , vol.50 , Issue.6 , pp. 697-704
    • Jafari-Khouzani, K.1    Soltanian-Zadeh, H.2
  • 8
    • 84856228103 scopus 로고    scopus 로고
    • Novel morphometric based classification via diffeomorphic based shape representation using manifold learning
    • R. Sparks and A. Madabhushi, "Novel morphometric based classification via diffeomorphic based shape representation using manifold learning," Med. Image Comput. Comput. Assist. Interv., vol. 13, no. Pt 3, pp. 658-665, 2010.
    • (2010) Med. Image Comput. Comput. Assist. Interv. , vol.13 , pp. 658-665
    • Sparks, R.1    Madabhushi, A.2
  • 9
    • 3943108192 scopus 로고    scopus 로고
    • Quantitative grading of tissue and nuclei in prostate cancer for prognosis prediction
    • W. Christens-Barry and A. Partin, "Quantitative grading of tissue and nuclei in prostate cancer for prognosis prediction," Johns Hopkins Apl. Tech. Dig., vol. 18, pp. 226-233, 1997.
    • (1997) Johns Hopkins Apl. Tech. Dig. , vol.18 , pp. 226-233
    • Christens-Barry, W.1    Partin, A.2
  • 10
    • 84867896468 scopus 로고    scopus 로고
    • Cascaded discrimination of normal, abnormal, and confounder classes in histopathology: Gleason grading of prostate cancer
    • S. Doyle, M. D. Feldman, N. Shih, J. Tomaszewski, and A. Madab-hushi, "Cascaded discrimination of normal, abnormal, and confounder classes in histopathology: Gleason grading of prostate cancer," BMC Bioinformat., vol. 13, no. 1, p. 282, 2012.
    • (2012) BMC Bioinformat. , vol.13 , Issue.1 , pp. 282
    • Doyle, S.1    Feldman, M.D.2    Shih, N.3    Tomaszewski, J.4    Madab-hushi, A.5
  • 11
    • 34047231722 scopus 로고    scopus 로고
    • Information fusion in biomedical image analysis: Combination of data vs. combination of interpretations
    • T. Rohlfing et al., "Information fusion in biomedical image analysis: Combination of data vs. combination of interpretations," in Proc. 19th Int. Conf. Inf. Process. Med. Imag., 2005, vol. 3565, pp. 150-161.
    • (2005) Proc. 19th Int. Conf. Inf. Process. Med. Imag. , vol.3565 , pp. 150-161
    • Rohlfing, T.1
  • 13
    • 58149421595 scopus 로고
    • Analysis of a complex of statistical variables into principal components
    • H. Hotelling, "Analysis of a complex of statistical variables into principal components," J. Edu. Psychol., vol. 24, pp. 417-441, 1933.
    • (1933) J. Edu. Psychol. , vol.24 , pp. 417-441
    • Hotelling, H.1
  • 14
    • 21244468777 scopus 로고    scopus 로고
    • Combining multiple clusterings using evidence accumulation
    • Jun.
    • A. L. N. Fred and A. K. Jain, "Combining multiple clusterings using evidence accumulation," IEEE Trans. Pattern Anal. Mach. Intell. vol. 27, no. 6, pp. 835-850, Jun. 2005.
    • (2005) IEEE Trans. Pattern Anal. Mach. Intell. , vol.27 , Issue.6 , pp. 835-850
    • Fred, A.L.N.1    Jain, A.K.2
  • 15
    • 80055047045 scopus 로고    scopus 로고
    • Multi-modal data fusion schemes for integrated classification of imaging and non-imaging biomedical data
    • P. Tiwari, S. Viswanath, G. Lee, and A. Madabhushi, "Multi-modal data fusion schemes for integrated classification of imaging and non-imaging biomedical data," in Proc. IEEE Int. Symp. Biomed. Imag., 2011, pp. 165-168.
    • (2011) Proc. IEEE Int. Symp. Biomed. Imag. , pp. 165-168
    • Tiwari, P.1    Viswanath, S.2    Lee, G.3    Madabhushi, A.4
  • 16
    • 70449434839 scopus 로고    scopus 로고
    • A knowledge representation framework for integration, classification of multi-scale imaging and non-imaging data: Preliminary results in predicting prostate cancer recurrence by fusing mass spectrometry and histology
    • G. Lee, S. Doyle, M. Feldman, J. Tomaszewski, and A. Madabhushi, "A knowledge representation framework for integration, classification of multi-scale imaging and non-imaging data: Preliminary results in predicting prostate cancer recurrence by fusing mass spectrometry and histology," in Proc. IEEE Int. Symp. Biomed. Imag., 2009, pp. 77-80.
    • (2009) Proc. IEEE Int. Symp. Biomed. Imag. , pp. 77-80
    • Lee, G.1    Doyle, S.2    Feldman, M.3    Tomaszewski, J.4    Madabhushi, A.5
  • 17
    • 84856592123 scopus 로고    scopus 로고
    • Consensus embedding: Theory, algorithms and application to segmentation and classification of biomedical data
    • S. Viswanath and A. Madabhushi, "Consensus embedding: Theory, algorithms and application to segmentation and classification of biomedical data," BMC Bioinformat., vol. 13, no. 1, p. 26, 2012.
    • (2012) BMC Bioinformat. , vol.13 , Issue.1 , pp. 26
    • Viswanath, S.1    Madabhushi, A.2
  • 18
    • 84983110889 scopus 로고
    • A desicion-theoretic generalization of on-line learning and an application to boosting
    • New York: Springer
    • Y. Freund and R. E. Schapire, "A desicion-theoretic generalization of on-line learning and an application to boosting," in Computational Learning Theory. New York: Springer, 1995, pp. 23-37.
    • (1995) Computational Learning Theory , pp. 23-37
    • Freund, Y.1    Schapire, R.E.2
  • 19
    • 2442674422 scopus 로고    scopus 로고
    • Kernel-based data fusion and its application to protein function prediction in yeast
    • G. Lanckriet et al., "Kernel-based data fusion and its application to protein function prediction in yeast," in Proc. Symp. Biocomp., 2004, pp. 300-311.
    • (2004) Proc. Symp. Biocomp. , pp. 300-311
    • Lanckriet, G.1
  • 20
    • 84870915433 scopus 로고    scopus 로고
    • Semi supervised multi kernel (SESMIK) graph embedding: Identifying aggressive prostate cancer via magnetic resonance imaging and spec-troscopy
    • P. Tiwari, J. Kurhanewicz, M. Rosen, and A. Madabhushi, "Semi supervised multi kernel (SESMIK) graph embedding: Identifying aggressive prostate cancer via magnetic resonance imaging and spec-troscopy," Med. Image Comput. Comput. Assist Interv., vol. 13, pp. 666-673, 2010.
    • (2010) Med. Image Comput. Comput. Assist Interv. , vol.13 , pp. 666-673
    • Tiwari, P.1    Kurhanewicz, J.2    Rosen, M.3    Madabhushi, A.4
  • 21
    • 79551665772 scopus 로고    scopus 로고
    • Contextual object localization with multiple kernel nearest neighbor
    • Feb.
    • B. McFee, C. Galleguillos, and G. Lanckriet, "Contextual object localization with multiple kernel nearest neighbor," IEEE Trans. Image Process. vol. 20, no. 2, pp. 570-585, Feb. 2011.
    • (2011) IEEE Trans. Image Process. , vol.20 , Issue.2 , pp. 570-585
    • McFee, B.1    Galleguillos, C.2    Lanckriet, G.3
  • 22
    • 0034244751 scopus 로고    scopus 로고
    • Normalized cuts and image segmentation
    • Aug.
    • J. Shi and J. Malik, "Normalized cuts and image segmentation," IEEE Trans. Pattern Anal. Mach. Intell., vol. 22, no. 8, pp. 888-905, Aug. 2000.
    • (2000) IEEE Trans. Pattern Anal. Mach. Intell. , vol.22 , Issue.8 , pp. 888-905
    • Shi, J.1    Malik, J.2
  • 23
    • 33750975917 scopus 로고    scopus 로고
    • Support vector machine learning from heterogeneous data: An empirical analysis using protein sequence and structure
    • D. P. Lewis, T. Jebara, and W. S. Noble, "Support vector machine learning from heterogeneous data: An empirical analysis using protein sequence and structure," Bioinformatics vol. 22, no. 22, pp. 2753-2760, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.22 , pp. 2753-2760
    • Lewis, D.P.1    Jebara, T.2    Noble, W.S.3
  • 24
    • 0000107975 scopus 로고
    • Relations between two sets of variates
    • H. Hotelling, "Relations between two sets of variates," Biometrika, vol. 28, no. 3/4, pp. 321-377, 1936.
    • (1936) Biometrika , vol.28 , Issue.3-4 , pp. 321-377
    • Hotelling, H.1
  • 25
    • 84958734809 scopus 로고
    • Further aspects of the theory of multiple regression
    • M. S. Bartlett, "Further aspects of the theory of multiple regression," in Proc. Cambridge Philos. Soc., 1938, vol. 34, no. 1, pp. 33-40.
    • (1938) Proc. Cambridge Philos. Soc. , vol.34 , Issue.1 , pp. 33-40
    • Bartlett, M.S.1
  • 26
    • 0001318292 scopus 로고
    • Canonical ridge and econometrics of joint production
    • H. D. Vinod, "Canonical ridge and econometrics of joint production," J. Econometr. vol. 4, no. 2, pp. 147-166, 1976.
    • (1976) J. Econometr. , vol.4 , Issue.2 , pp. 147-166
    • Vinod, H.D.1
  • 28
    • 0000020007 scopus 로고
    • Canonical analysis of several sets of variables
    • J. R. Kettenring, "Canonical analysis of several sets of variables," Biometrika vol. 58, no. 3, pp. 433-451, 1971.
    • (1971) Biometrika , vol.58 , Issue.3 , pp. 433-451
    • Kettenring, J.R.1
  • 30
    • 10044285992 scopus 로고    scopus 로고
    • Canonical correlation analysis: An overview with application to learning methods
    • Dec.
    • D. R. Hardoon, S. Szedmak, and J. Shawe-Taylor, "Canonical correlation analysis: An overview with application to learning methods," Neural Comput. vol. 16, no. 12, pp. 2639-2664, Dec. 2004.
    • (2004) Neural Comput. , vol.16 , Issue.12 , pp. 2639-2664
    • Hardoon, D.R.1    Szedmak, S.2    Shawe-Taylor, J.3
  • 31
    • 0037096912 scopus 로고    scopus 로고
    • Comparing the costs of radiation therapy and radical prostatectomy for the initial treatment of early-stage prostate cancer
    • J. H. Burkhardt, M. S. Litwin, C. M. Rose, R. J. Correa, J. H. Sunshine, C. Hogan, and J. A. Hayman, "Comparing the costs of radiation therapy and radical prostatectomy for the initial treatment of early-stage prostate cancer," J. Clin. Oncol. vol. 20, no. 12, pp. 2869-2875, 2002.
    • (2002) J. Clin. Oncol. , vol.20 , Issue.12 , pp. 2869-2875
    • Burkhardt, J.H.1    Litwin, M.S.2    Rose, C.M.3    Correa, R.J.4    Sunshine, J.H.5    Hogan, C.6    Hayman, J.A.7
  • 32
    • 45349084317 scopus 로고    scopus 로고
    • Prostate cancer-specific survival following salvage radiotherapy vs observation in men with biochemical recurrence after radical prostatectomy
    • June
    • B. Trock et al., "Prostate cancer-specific survival following salvage radiotherapy vs observation in men with biochemical recurrence after radical prostatectomy," JAMA vol. 299, no. 23, pp. 2760-2769, June 2008.
    • (2008) JAMA , vol.299 , Issue.23 , pp. 2760-2769
    • Trock, B.1
  • 33
    • 80055018711 scopus 로고    scopus 로고
    • Histopathological variables and biomarkers enhancer of zeste homologue 2, ki-67 and minichromosome maintenance protein 7 as prognosticators in primarily endocrine-treated prostate cancer
    • May
    • T. T. Tolonen, T. L. J. Tammela, P. M. Kujala, V. J. Tuominen, J. J. Isola, and T. Visakorpi, "Histopathological variables and biomarkers enhancer of zeste homologue 2, ki-67 and minichromosome maintenance protein 7 as prognosticators in primarily endocrine-treated prostate cancer," BJU Int. May 2011.
    • (2011) BJU Int
    • Tolonen, T.T.1    Tammela, T.L.J.2    Kujala, P.M.3    Tuominen, V.J.4    Isola, J.J.5    Visakorpi, T.6
  • 34
    • 73749085949 scopus 로고    scopus 로고
    • An update of the Gleason Grading system
    • J. I. Epstein, "An update of the Gleason Grading system," J. Urol. vol. 183, no. 2, pp. 433-440, 2010.
    • (2010) J. Urol. , vol.183 , Issue.2 , pp. 433-440
    • Epstein, J.I.1
  • 35
    • 0035122453 scopus 로고    scopus 로고
    • Interobserver reproducibility of Gleason Grading of prostatic carcinoma: General pathologist
    • Jan.
    • W. C. Allsbrook, K. A. Mangold, M. H. Johnson, R. B. Lane, C. G. Lane, and J. I. Epstein, "Interobserver reproducibility of Gleason Grading of prostatic carcinoma: General pathologist," Hum. Pathol. vol. 32, no. 1, pp. 81-88, Jan. 2001.
    • (2001) Hum. Pathol. , vol.32 , Issue.1 , pp. 81-88
    • Allsbrook, W.C.1    Mangold, K.A.2    Johnson, M.H.3    Lane, R.B.4    Lane, C.G.5    Epstein, J.I.6
  • 37
    • 77956374808 scopus 로고    scopus 로고
    • Nuclear roundness variance predicts prostate cancer progression, metastasis, and death: A prospective evaluation with up to 25 years of follow-up after radical prostatectomy
    • R. W. Veltri, S. Isharwal, M. C. Miller, J. I. Epstein, and A. W. Partin, "Nuclear roundness variance predicts prostate cancer progression, metastasis, and death: A prospective evaluation with up to 25 years of follow-up after radical prostatectomy," Prostate vol. 70, no. 12, pp. 1333-1339, 2010.
    • (2010) Prostate , vol.70 , Issue.12 , pp. 1333-1339
    • Veltri, R.W.1    Isharwal, S.2    Miller, M.C.3    Epstein, J.I.4    Partin, A.W.5
  • 39
    • 17844391271 scopus 로고    scopus 로고
    • Mass spectrometry-based expression profiling of clinical prostate cancer
    • Apr.
    • M. Wright et al., "Mass spectrometry-based expression profiling of clinical prostate cancer," Mol. Cell Proteomics vol. 4, no. 4, pp. 545-554, Apr. 2005.
    • (2005) Mol. Cell Proteomics , vol.4 , Issue.4 , pp. 545-554
    • Wright, M.1
  • 40
    • 59349092682 scopus 로고    scopus 로고
    • Predicting prostate cancer biochemical recurrence using a panel of serum proteomic biomarkers
    • Mar.
    • C. N. Rosenzweig, Z. Zhang, X. Sun, L. J. Sokoll, K. Osborne, A. W. Partin, and D. W. Chan, "Predicting prostate cancer biochemical recurrence using a panel of serum proteomic biomarkers," J. Urol. vol. 181, no. 3, pp. 1407-1414, Mar. 2009.
    • (2009) J. Urol. , vol.181 , Issue.3 , pp. 1407-1414
    • Rosenzweig, C.N.1    Zhang, Z.2    Sun, X.3    Sokoll, L.J.4    Osborne, K.5    Partin, A.W.6    Chan, D.W.7
  • 41
    • 61649098448 scopus 로고    scopus 로고
    • Ki-67 in screen-detected, low-grade, low-stage prostate cancer, relation to prostate-specific antigen doubling time, Gleason score and prostate-specific antigen relapse after radical prostatectomy
    • A. Khatami, J. Hugosson, W. Wang, and J.-E. Damber, "Ki-67 in screen-detected, low-grade, low-stage prostate cancer, relation to prostate-specific antigen doubling time, Gleason score and prostate-specific antigen relapse after radical prostatectomy," Scand. J. Urol. Nephrol. vol. 43, no. 1, pp. 12-18, 2009.
    • (2009) Scand. J. Urol. Nephrol. , vol.43 , Issue.1 , pp. 12-18
    • Khatami, A.1    Hugosson, J.2    Wang, W.3    Damber, J.-E.4
  • 42
    • 78650824257 scopus 로고    scopus 로고
    • Immunohistochemistry expression of tumor markers cd34 and p27 as a prognostic factor of clinically localized prostate adenocarcinoma after radical prostatectomy
    • Oct.
    • A. E. Nassif and R. T. Filho, "Immunohistochemistry expression of tumor markers cd34 and p27 as a prognostic factor of clinically localized prostate adenocarcinoma after radical prostatectomy," Rev. Col. Bras. Cir., vol. 37, no. 5, pp. 338-344, Oct. 2010.
    • (2010) Rev. Col. Bras. Cir. , vol.37 , Issue.5 , pp. 338-344
    • Nassif, A.E.1    Filho, R.T.2
  • 44
    • 0036645099 scopus 로고    scopus 로고
    • Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
    • Jul.
    • B.-L. Adam, Y. Qu, J. W. Davis, M. D. Ward, M. A. Clements, L. H. Cazares, O. J. Semmes, P. F. Schellhammer, Y. Yasui, Z. Feng, and G. L. Wright, Jr., "Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men," Cancer Res., vol. 62, no. 13, pp. 3609-3614, Jul. 2002.
    • (2002) Cancer Res. , vol.62 , Issue.13 , pp. 3609-3614
    • Adam, B.-L.1    Qu, Y.2    Davis, J.W.3    Ward, M.D.4    Clements, M.A.5    Cazares, L.H.6    Semmes, O.J.7    Schellhammer, P.F.8    Yasui, Y.9    Feng, Z.10    Wright, Jr.G.L.11
  • 46
    • 33846898949 scopus 로고    scopus 로고
    • Class label versus sample label-based CCA
    • T. Sun and S. Chen, "Class label versus sample label-based CCA," Appl. Math. Computat. vol. 185, no. 1, pp. 272-283, 2007.
    • (2007) Appl. Math. Computat. , vol.185 , Issue.1 , pp. 272-283
    • Sun, T.1    Chen, S.2
  • 47
    • 81955160889 scopus 로고    scopus 로고
    • The Gaussian rank correlation estimator: Robustness properties
    • K. Boudt, J. Cornelissen, and C. Croux, "The gaussian rank correlation estimator: Robustness properties," Stat. Comput. vol. 22, no. 2, pp. 471-483, 2012.
    • (2012) Stat. Comput. , vol.22 , Issue.2 , pp. 471-483
    • Boudt, K.1    Cornelissen, J.2    Croux, C.3
  • 48
    • 34547131280 scopus 로고    scopus 로고
    • A robust measure of correlation between two genes on a microarray
    • J. Hardin, A. Mitani, L. Hicks, and B. VanKoten, "A robust measure of correlation between two genes on a microarray," BMC Bioinformat., vol. 8, no. 1, p. 220, 2007.
    • (2007) BMC Bioinformat. , vol.8 , Issue.1 , pp. 220
    • Hardin, J.1    Mitani, A.2    Hicks, L.3    VanKoten, B.4
  • 50
    • 84856407461 scopus 로고    scopus 로고
    • Peptide extraction from formalin-fixed paraffin-embedded tissue
    • vol. Chapter 23 p. Unit23.5 Aug.
    • K. J. Heaton and S. R. Master, "Peptide extraction from formalin-fixed paraffin-embedded tissue," Curr. Protoc. Protein. Sci. vol. Chapter 23, p. Unit23.5, Aug. 2011.
    • (2011) Curr. Protoc. Protein. Sci
    • Heaton, K.J.1    Master, S.R.2
  • 51
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • May
    • J. R. Wisniewski, A. Zougman, N. Nagaraj, and M. Mann, "Universal sample preparation method for proteome analysis," Nat. Methods vol. 6, no. 5, pp. 359-362, May 2009.
    • (2009) Nat. Methods , vol.6 , Issue.5 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 52
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for pro-teomics using stagetips
    • J. Rappsilber, M. Mann, and Y. Ishihama, "Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for pro-teomics using stagetips," Nat. Protoc. vol. 2, no. 8, pp. 1896-1906, 2007.
    • (2007) Nat. Protoc. , vol.2 , Issue.8 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3
  • 53
    • 57449099865 scopus 로고    scopus 로고
    • Maxquant enables high peptide identification rates, individualized PPB-range mass accuracies and proteome-wide protein quantification
    • J. Cox and M. Mann, "Maxquant enables high peptide identification rates, individualized PPB-range mass accuracies and proteome-wide protein quantification," Nature Biotechnol. vol. 26, no. 12, pp. 1367-1372, 2008.
    • (2008) Nature Biotechnol. , vol.26 , Issue.12 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 54
    • 84861157792 scopus 로고    scopus 로고
    • Super-silac allows classification of diffuse large b-cell lymphoma subtypes by their protein expression profiles
    • S. J. Deeb, R. C. D'Souza, J. Cox, M. Schmidt-Supprian, and M. Mann, "Super-silac allows classification of diffuse large b-cell lymphoma subtypes by their protein expression profiles," Molecular Cellular Pro-teomics vol. 11, no. 5, pp. 77-89, 2012.
    • (2012) Molecular Cellular Pro-teomics , vol.11 , Issue.5 , pp. 77-89
    • Deeb, S.J.1    D'Souza, R.C.2    Cox, J.3    Schmidt-Supprian, M.4    Mann, M.5
  • 55
    • 51049110072 scopus 로고    scopus 로고
    • Automated gland and nuclei segmentation for grading of prostate and breast cancer histopathology
    • S. Naik et al., "Automated gland and nuclei segmentation for grading of prostate and breast cancer histopathology," in Proc. IEEE Int. Symp. Biomed. Imag., 2008, pp. 284-287.
    • (2008) Proc. IEEE Int. Symp. Biomed. Imag. , pp. 284-287
    • Naik, S.1
  • 57
    • 84870065068 scopus 로고    scopus 로고
    • Class-specific weighting for Markov random field estimation: Application to medical image segmentation
    • J. Monaco et al., "Class-specific weighting for Markov random field estimation: Application to medical image segmentation," Med. Image Anal., vol. 16, no. 8, pp. 1477-1489, 2012.
    • (2012) Med. Image Anal. , vol.16 , Issue.8 , pp. 1477-1489
    • Monaco, J.1
  • 60
    • 84881644151 scopus 로고    scopus 로고
    • Co-occurring gland tensors in localized cluster graphs: Quantitative histomorphometry for predicting biochemical recurrence for intermediate grade prostate cancer
    • G. Lee, R. Sparks, S. Ali, A. Madabhushi, M. D. Feldman, S. Master, N. Shih, and J. Tomaszewski, "Co-occurring gland tensors in localized cluster graphs: Quantitative histomorphometry for predicting biochemical recurrence for intermediate grade prostate cancer," in Proc. IEEE 10th Int. Symp. Biomed. Imag., 2013, pp. 113-116.
    • (2013) Proc. IEEE 10th Int. Symp. Biomed. Imag. , pp. 113-116
    • Lee, G.1    Sparks, R.2    Ali, S.3    Madabhushi, A.4    Feldman, M.D.5    Master, S.6    Shih, N.7    Tomaszewski, J.8
  • 61
    • 84902138072 scopus 로고    scopus 로고
    • Co-occurring gland angularity in localized subgraphs: Predicting biochemical recurrence in intermediate-risk prostate cancer patients
    • G. Lee, R. Sparks, S. Ali, N. N. C. Shih, M. D. Feldman, E. Spangler, T. Rebbeck, J. E. Tomaszewski, and A. Madabhushi, "Co-occurring gland angularity in localized subgraphs: Predicting biochemical recurrence in intermediate-risk prostate cancer patients," PLoS One vol. 9, no. 5, p. e97954, 2014.
    • (2014) PLoS One , vol.9 , Issue.5 , pp. e97954
    • Lee, G.1    Sparks, R.2    Ali, S.3    Shih, N.N.C.4    Feldman, M.D.5    Spangler, E.6    Rebbeck, T.7    Tomaszewski, J.E.8    Madabhushi, A.9
  • 62
    • 84878583241 scopus 로고    scopus 로고
    • Cell cluster graph for prediction of biochemical recurrence in prostate cancer patients from tissue microarrays
    • S. Ali, R. Veltri, J. I. Epstein, C. Christudass, and A. Madabhushi, "Cell cluster graph for prediction of biochemical recurrence in prostate cancer patients from tissue microarrays," in Proc. SPIE Med. Imag, 2013.
    • (2013) Proc. SPIE Med. Imag
    • Ali, S.1    Veltri, R.2    Epstein, J.I.3    Christudass, C.4    Madabhushi, A.5
  • 63
    • 57649229046 scopus 로고    scopus 로고
    • Cell-graph mining for breast tissue modeling and classification
    • C. Bilgin, C. Demir, C. Nagi, and B. Yener, "Cell-graph mining for breast tissue modeling and classification," in Proc. IEEE Eng. Med. Biol. Soc., 2007, pp. 5311-5314.
    • (2007) Proc. IEEE Eng. Med. Biol. Soc. , pp. 5311-5314
    • Bilgin, C.1    Demir, C.2    Nagi, C.3    Yener, B.4
  • 64
    • 84890445089 scopus 로고    scopus 로고
    • Overfitting in making comparisons between variable selection methods
    • J. Reunanen, "Overfitting in making comparisons between variable selection methods," J. Mach. Learn. Res., vol. 3, pp. 1371-1382, 2003.
    • (2003) J. Mach. Learn. Res. , vol.3 , pp. 1371-1382
    • Reunanen, J.1
  • 65
    • 22944466045 scopus 로고    scopus 로고
    • Classification, model selection and performance evaluation
    • F. Markowetz and R. Spang, "Classification, model selection and performance evaluation," Methods Inf. Med. vol. 44, pp. 438-43, 2005.
    • (2005) Methods Inf. Med. , vol.44 , pp. 438-443
    • Markowetz, F.1    Spang, R.2
  • 66
    • 0034911875 scopus 로고    scopus 로고
    • An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles
    • J. G. Thomas, J. M. Olson, S. J. Tapscott, and L. P. Zhao, "An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles," Genome Res. vol. 11, no. 7, pp. 1227-1236, 2001.
    • (2001) Genome Res. , vol.11 , Issue.7 , pp. 1227-1236
    • Thomas, J.G.1    Olson, J.M.2    Tapscott, S.J.3    Zhao, L.P.4
  • 67
    • 84858846668 scopus 로고    scopus 로고
    • Multimodal wavelet embedding representation for data combination (MAWERIC): Integrating magnetic resonance imaging and spectroscopy for prostate cancer detection
    • P. Tiwari, S. Viswanath, J. Kurhanewicz, A. Sridhar, and A. Madab-hushi, "Multimodal wavelet embedding representation for data combination (MAWERIC): Integrating magnetic resonance imaging and spectroscopy for prostate cancer detection," NMR Biomed. vol. 25, no. 4, pp. 607-619, 2012.
    • (2012) NMR Biomed. , vol.25 , Issue.4 , pp. 607-619
    • Tiwari, P.1    Viswanath, S.2    Kurhanewicz, J.3    Sridhar, A.4    Madab-hushi, A.5
  • 68
    • 56449106936 scopus 로고    scopus 로고
    • A least squares formulation for canonical correlation analysis
    • L. Sun, S. Ji, and J. Ye, "A least squares formulation for canonical correlation analysis," in Proc. 25th Int. Conf. Mach. Learn., 2008, pp. 1024-1031.
    • (2008) Proc. 25th Int. Conf. Mach. Learn. , pp. 1024-1031
    • Sun, L.1    Ji, S.2    Ye, J.3
  • 69
    • 33845413755 scopus 로고    scopus 로고
    • Regularized linear discriminant analysis and its application in microarrays
    • Y. Guo, T. Hastie, and R. Tibshirani, "Regularized linear discriminant analysis and its application in microarrays," Biostatistics vol. 8, no. 1, pp. 86-100, 2007.
    • (2007) Biostatistics , vol.8 , Issue.1 , pp. 86-100
    • Guo, Y.1    Hastie, T.2    Tibshirani, R.3
  • 70
    • 40549145529 scopus 로고    scopus 로고
    • CCA: An r package to extend canonical correlation analysis
    • I. González et al., "CCA: An r package to extend canonical correlation analysis," J. Stat. Software, vol. 23, no. 12, pp. 1-14, 2008.
    • (2008) J. Stat. Software , vol.23 , Issue.12 , pp. 1-14
    • González, I.1
  • 72
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • L. Breiman, "Random forests," Mach. Learn., vol. 45, pp. 5-32, 2001.
    • (2001) Mach. Learn. , vol.45 , pp. 5-32
    • Breiman, L.1
  • 73
    • 0031191630 scopus 로고    scopus 로고
    • The use of the area under the roc curve in the evaluation of machine learning algorithms
    • A. P. Bradley, "The use of the area under the roc curve in the evaluation of machine learning algorithms," Pattern Recognit. vol. 30, no. 7, pp. 1145-1159, 1997.
    • (1997) Pattern Recognit. , vol.30 , Issue.7 , pp. 1145-1159
    • Bradley, A.P.1
  • 74
    • 33845382806 scopus 로고
    • Nonparametric estimation from incomplete observations
    • E. L. Kaplan and P. Meier, "Nonparametric estimation from incomplete observations," J. Am. Stat. Assoc. vol. 53, no. 282, pp. 457-481, 1958.
    • (1958) J. Am. Stat. Assoc. , vol.53 , Issue.282 , pp. 457-481
    • Kaplan, E.L.1    Meier, P.2
  • 75
    • 0013886333 scopus 로고
    • Evaluation of survival data and two new rank order statistics arising in its consideration
    • N. Mantel, "Evaluation of survival data and two new rank order statistics arising in its consideration," Cancer Chemother. Rep., vol. 50, pp. 163-170, 1966.
    • (1966) Cancer Chemother. Rep. , vol.50 , pp. 163-170
    • Mantel, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.