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Volumn 197, Issue 15, 2015, Pages 2454-2457

Every site counts: Submitting transcription factor-binding site information through the collecTF portal

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TRANSCRIPTION FACTOR; BACTERIAL DNA; BACTERIAL PROTEIN;

EID: 84937010353     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00031-15     Document Type: Note
Times cited : (3)

References (30)
  • 3
    • 78651335917 scopus 로고    scopus 로고
    • The International Nucleotide Sequence Database Collaboration
    • Cochrane G, Karsch-Mizrachi I, Nakamura Y. 2011. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res 39:D15-D18. http://dx.doi.org/10.1093/nar/gkq1150.
    • (2011) Nucleic Acids Res , vol.39 , pp. D15-D18
    • Cochrane, G.1    Karsch-Mizrachi, I.2    Nakamura, Y.3
  • 9
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr SS, Milo R, Mangan S, Alon U. 2002. Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 31:64-68. http://dx.doi.org/10.1038/ng881.
    • (2002) Nat Genet , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 10
    • 33846400424 scopus 로고    scopus 로고
    • Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
    • Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. 2007. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol 5:e8. http://dx.doi.org/10.1371/journal.pbio .0050008.
    • (2007) PLoS Biol , vol.5 , pp. e8
    • Faith, J.J.1    Hayete, B.2    Thaden, J.T.3    Mogno, I.4    Wierzbowski, J.5    Cottarel, G.6    Kasif, S.7    Collins, J.J.8    Gardner, T.S.9
  • 11
    • 67149102196 scopus 로고    scopus 로고
    • Methods to reconstruct and compare transcriptional regulatory networks
    • Babu MM, Lang B, Aravind L. 2009. Methods to reconstruct and compare transcriptional regulatory networks. Methods Mol Biol 541:163-180. http://dx.doi.org/10.1007/978-1-59745-243-4_8.
    • (2009) Methods Mol Biol , vol.541 , pp. 163-180
    • Babu, M.M.1    Lang, B.2    Aravind, L.3
  • 12
    • 66949126184 scopus 로고    scopus 로고
    • Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations
    • Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A. 2009. Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations. BMCSyst Biol 3:39. http://dx.doi.org/10.1186/1752-0509-3-39.
    • (2009) BMCSyst Biol , vol.3 , pp. 39
    • Zare, H.1    Sangurdekar, D.2    Srivastava, P.3    Kaveh, M.4    Khodursky, A.5
  • 13
    • 65549147368 scopus 로고    scopus 로고
    • A reexamination of information theory-based methods for DNA-binding site identification
    • Erill I, O'Neill MC. 2009. A reexamination of information theory-based methods for DNA-binding site identification. BMC Bioinformatics 10:57. http://dx.doi.org/10.1186/1471-2105-10-57.
    • (2009) BMC Bioinformatics , vol.10 , pp. 57
    • Erill, I.1    O'Neill, M.C.2
  • 14
    • 84856465122 scopus 로고    scopus 로고
    • Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes
    • Sanchez-Alberola N, Campoy S, Barbe J, Erill I. 2012. Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes. BMC Genomics 13:58. http://dx.doi.org/10.1186/1471-2164-13-58.
    • (2012) BMC Genomics , vol.13 , pp. 58
    • Sanchez-Alberola, N.1    Campoy, S.2    Barbe, J.3    Erill, I.4
  • 16
    • 0035170506 scopus 로고    scopus 로고
    • DBTBS: a database of Bacillus subtilis promoters and transcription factors
    • Ishii T, Yoshida K, Terai G, Fujita Y, Nakai K. 2001. DBTBS: a database of Bacillus subtilis promoters and transcription factors. Nucleic Acids Res 29:278-280. http://dx.doi.org/10.1093/nar/29.1.278.
    • (2001) Nucleic Acids Res , vol.29 , pp. 278-280
    • Ishii, T.1    Yoshida, K.2    Terai, G.3    Fujita, Y.4    Nakai, K.5
  • 19
    • 84862195656 scopus 로고    scopus 로고
    • Coryne-RegNet 6.0-updated database content, new analysis methods and novel features focusing on community demands
    • Pauling J, Röttger R, Tauch A, Azevedo V, Baumbach J. 2012. Coryne-RegNet 6.0-updated database content, new analysis methods and novel features focusing on community demands. Nucleic Acids Res 40:D610-D614. http://dx.doi.org/10.1093/nar/gkr883.
    • (2012) Nucleic Acids Res , vol.40 , pp. D610-D614
    • Pauling, J.1    Röttger, R.2    Tauch, A.3    Azevedo, V.4    Baumbach, J.5
  • 21
    • 84875521674 scopus 로고    scopus 로고
    • RegTransBase-a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
    • Cipriano MJ, Novichkov PN, Kazakov AE, Rodionov DA, Arkin AP, Gelfand MS, Dubchak I. 2013. RegTransBase-a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 14:213. http://dx.doi.org/10.1186/1471-2164-14-213.
    • (2013) BMC Genomics , vol.14 , pp. 213
    • Cipriano, M.J.1    Novichkov, P.N.2    Kazakov, A.E.3    Rodionov, D.A.4    Arkin, A.P.5    Gelfand, M.S.6    Dubchak, I.7
  • 24
    • 84891756141 scopus 로고    scopus 로고
    • CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria
    • Kiliç S, White ER, Sagitova DM, Cornish JP, Erill I. 2014. CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria. Nucleic Acids Res 42:D156-D160. http://dx.doi.org/10.1093/nar/gkt1123.
    • (2014) Nucleic Acids Res , vol.42 , pp. D156-D160
    • Kiliç, S.1    White, E.R.2    Sagitova, D.M.3    Cornish, J.P.4    Erill, I.5
  • 27
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: a hub for protein information
    • UniProt Consortium
    • UniProt Consortium. 2015. UniProt: a hub for protein information. Nucleic Acids Res 43:D204-D212. http://dx.doi.org/10.1093/nar/gku989.
    • (2015) Nucleic Acids Res , vol.43 , pp. D204-D212
  • 28
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider TD, Stephens RM. 1990. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 18:6097-6100. http://dx.doi.org /10.1093/nar/18.20.6097.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 30
    • 84875170740 scopus 로고    scopus 로고
    • LASAGNA: a novel algorithm for transcription factor binding site alignment
    • Lee C, Huang C-H. 2013. LASAGNA: a novel algorithm for transcription factor binding site alignment. BMC Bioinformatics 14:108. http://dx.doi .org/10.1186/1471-2105-14-108.
    • (2013) BMC Bioinformatics , vol.14 , pp. 108
    • Lee, C.1    Huang, C.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.