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Volumn 6, Issue 3, 2015, Pages 1-15

Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions

Author keywords

[No Author keywords available]

Indexed keywords

METHANE; ARCHAEAL DNA; ARCHAEAL RNA; BACTERIAL DNA; BACTERIAL RNA; RIBOSOME DNA; RNA 16S;

EID: 84936945650     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00066-15     Document Type: Article
Times cited : (82)

References (69)
  • 4
    • 0042475178 scopus 로고
    • The settlement geography of the Sacramento-San Joaquín Delta, California
    • Stanford University, Stanford, CA
    • Thompson J. 1957. The settlement geography of the Sacramento-San Joaquín Delta, California. Ph.D. thesis. Stanford University, Stanford, CA.
    • (1957) Ph.D. thesis
    • Thompson, J.1
  • 5
    • 0029659721 scopus 로고    scopus 로고
    • Subsidence of agricultural lands in the Sacramento-San Joaquín Delta, California: Role of aqueous and gaseous carbon fluxes
    • Deverel SJ, Rojstaczer S. 1996. Subsidence of agricultural lands in the Sacramento-San Joaquín Delta, California: role of aqueous and gaseous carbon fluxes. Water Resour Res 32:2359-2367. http://dx.doi.org/ 10.1029/96WR01338.
    • (1996) Water Resour Res , vol.32 , pp. 2359-2367
    • Deverel, S.J.1    Rojstaczer, S.2
  • 6
    • 70350086697 scopus 로고    scopus 로고
    • The legacy of wetland drainage on the remaining peat in the Sacramento-San Joaquín Delta, California, USA
    • Drexler JZ, Fontaine CS, Deverel SJ. 2009. The legacy of wetland drainage on the remaining peat in the Sacramento-San Joaquín Delta, California, USA. Wetlands 29:372-386. http://dx.doi.org/10.1672/08-97.1.
    • (2009) Wetlands , vol.29 , pp. 372-386
    • Drexler, J.Z.1    Fontaine, C.S.2    Deverel, S.J.3
  • 7
    • 78649888331 scopus 로고    scopus 로고
    • Subsidence reversal in a re-established wetland in the Sacramento-San Joaquín Delta, California, USA
    • Miller RL, Fram MS, Fujii R, Wheeler G. 2008. Subsidence reversal in a re-established wetland in the Sacramento-San Joaquín Delta, California, USA. San Francisco Estuary Watershed Sci 6:1-20. http:// escholarship.org/uc/item/5j76502x
    • (2008) San Francisco Estuary Watershed Sci , vol.6 , pp. 1-20
    • Miller, R.L.1    Fram, M.S.2    Fujii, R.3    Wheeler, G.4
  • 8
    • 35848952632 scopus 로고    scopus 로고
    • Couplings between changes in the climate system and biogeochemistry
    • In Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL. (ed) Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom
    • Denman KL, Brasseur G, Chidthaisong A, Ciais P, Cox PM, Dickinson RE, Hauglustaine D, Heinze C, Holland E, Jacob D, Lohmann U, Ramachandran S, Dias PLDS, Wofsy SC, Zhang X. 2007. Couplings between changes in the climate system and biogeochemistry, p 499-587. In Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL. (ed), Climate change 2007: the physical science basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom.
    • (2007) Climate change 2007: The physical science basis , vol.2007 , pp. 499-587
    • Denman, K.L.1    Brasseur, G.2    Chidthaisong, A.3    Ciais, P.4    Cox, P.M.5    Dickinson, R.E.6    Hauglustaine, D.7    Heinze, C.8    Holland, E.9    Jacob, D.10    Lohmann, U.11    Ramachandran, S.12    Dias, P.L.D.S.13    Wofsy, S.C.14    Zhang, X.15
  • 9
    • 0035157631 scopus 로고    scopus 로고
    • Greenhouse carbon balance of wetlands: Methane emission versus carbon sequestration
    • Whiting GJ, Chanton JP. 2001. Greenhouse carbon balance of wetlands: methane emission versus carbon sequestration. Tellus B 53:521-528. http://dx.doi.org/10.1034/j.1600-0889.2001.530501.x.
    • (2001) Tellus B , vol.53 , pp. 521-528
    • Whiting, G.J.1    Chanton, J.P.2
  • 10
    • 84863725220 scopus 로고    scopus 로고
    • Carbon gas fluxes in re-established wetlands on organic soils differ relative to plant community and hydrology
    • Miller RL. 2011. Carbon gas fluxes in re-established wetlands on organic soils differ relative to plant community and hydrology. Wetlands 31: 1055-1066. http://dx.doi.org/10.1007/s13157-011-0215-2.
    • (2011) Wetlands , vol.31 , pp. 1055-1066
    • Miller, R.L.1
  • 11
    • 77951023329 scopus 로고    scopus 로고
    • Carbon storage and fluxes within freshwater wetlands: A critical review
    • Kayranli B, Scholz M, Mustafa A, Hedmark Å. 2010. Carbon storage and fluxes within freshwater wetlands: a critical review. Wetlands 30:111-124. http://dx.doi.org/10.1007/s13157-009-0003-4.
    • (2010) Wetlands , vol.30 , pp. 111-124
    • Kayranli, B.1    Scholz, M.2    Mustafa, A.3    Hedmark, Å.4
  • 12
    • 73149099698 scopus 로고    scopus 로고
    • Methane emission from natural wetlands: Interplay between emergent macrophytes and soil microbial processes
    • Laanbroek HJ. 2010. Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes. A minireview. Ann Bot 105:141-153. http://dx.doi.org/10.1093/aob/mcp201.
    • (2010) A minireview. Ann Bot , vol.105 , pp. 141-153
    • Laanbroek, H.J.1
  • 13
    • 0035043535 scopus 로고    scopus 로고
    • Production, oxidation, emission and consumption of methane by soils: A review
    • Le Mer J, Roger JP. 2001. Production, oxidation, emission and consumption of methane by soils: a review. Eur J Soil Biol 37:25-50. http:// dx.doi.org/10.1016/S1164-5563(01)01067-6.
    • (2001) Eur J Soil Biol , vol.37 , pp. 25-50
    • Le Mer, J.1    Roger, J.P.2
  • 14
    • 84875874727 scopus 로고    scopus 로고
    • Methane emissions from wetlands: Biogeochemical, microbial, and modeling perspectives from local to global scales
    • Bridgham SD, Cadillo-Quiroz H, Keller JK, Zhuang Q. 2013. Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales. Glob Chang Biol 19:1325-1346. http://dx.doi.org/10.1111/gcb.12131.
    • (2013) Glob Chang Biol , vol.19 , pp. 1325-1346
    • Bridgham, S.D.1    Cadillo-Quiroz, H.2    Keller, J.K.3    Zhuang, Q.4
  • 15
    • 84936946503 scopus 로고    scopus 로고
    • Hydrologic and water-quality conditions during restoration of theWoodRiver wetland, upper Klamath River Basin, Oregon, 2003-05: U.S
    • U.S. Department of the Interior, U.S. Geological Survey, Reston, VA
    • Carpenter K, Snyder D, Duff J, Triska F, Lee K, Avanzino R, Sobieszczyk S. 2009. Hydrologic and water-quality conditions during restoration of theWoodRiver wetland, upper Klamath River Basin, Oregon, 2003-05: U.S. Geological Survey Scientific Investigations Report 2009-5004. U.S. Department of the Interior, U.S. Geological Survey, Reston, VA.
    • (2009) Geological Survey Scientific Investigations Report 2009-5004
    • Carpenter, K.1    Snyder, D.2    Duff, J.3    Triska, F.4    Lee, K.5    Avanzino, R.6    Sobieszczyk, S.7
  • 18
    • 0021580075 scopus 로고
    • The structure and continuity of the lacunar system of the seagrass Halophila ovalis (R
    • Roberts DG, McComb AJ. 1984. The structure and continuity of the lacunar system of the seagrass Halophila ovalis (R. Br.) Hook f. (Hydrocharitaceae). Aquat Bot 18:377-388.
    • (1984) Br.) Hook f. (Hydrocharitaceae). Aquat Bot , vol.18 , pp. 377-388
    • Roberts, D.G.1    McComb, A.J.2
  • 19
    • 0001494726 scopus 로고
    • Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L
    • Caffrey JM, Kemp WM. 1991. Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L. and Zostera marina L. Aquat Bot 40:109-128. http://dx.doi.org/ 10.1016/0304-3770(91)90090-R.
    • (1991) And Zostera marina L. Aquat Bot , vol.40 , pp. 109-128
    • Caffrey, J.M.1    Kemp, W.M.2
  • 21
    • 0042739619 scopus 로고    scopus 로고
    • The effect of vascular plants on carbon turnover and methane emissions from a tundra wetland
    • Ström L, Ekberg A, Mastepanov M, Røjle Christensen T. 2003. The effect of vascular plants on carbon turnover and methane emissions from a tundra wetland. Glob Change Biol 9:1185-1192. http://dx.doi.org/ 10.1046/j.1365-2486.2003.00655.x.
    • (2003) Glob Change Biol , vol.9 , pp. 1185-1192
    • Ström, L.1    Ekberg, A.2    Mastepanov, M.3    Røjle Christensen, T.4
  • 22
    • 33745942317 scopus 로고    scopus 로고
    • The role of root exudates in rhizosphere interactions with plants and other organisms
    • Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM. 2006. The role of root exudates in rhizosphere interactions with plants and other organisms. Annu Rev Plant Biol 57:233-266. http://dx.doi.org/10.1146/ annurev.arplant.57.032905.105159.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 233-266
    • Bais, H.P.1    Weir, T.L.2    Perry, L.G.3    Gilroy, S.4    Vivanco, J.M.5
  • 23
    • 41349083576 scopus 로고    scopus 로고
    • Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea
    • Liu Y, Whitman WB. 2008. Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Ann N Y Acad Sci 1125:171-189. http://dx.doi.org/10.1196/annals.1419.019.
    • (2008) Ann N Y Acad Sci , vol.1125 , pp. 171-189
    • Liu, Y.1    Whitman, W.B.2
  • 26
    • 0026780594 scopus 로고
    • Methanogenesis from acetate: A comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp
    • Jetten M, Stams AJM, Zehnder AJB. 1992. Methanogenesis from acetate: a comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp. FEMS Microbiol Lett 88:181-198. http://dx.doi.org/ 10.1016/0378-1097(92)90802-U.
    • (1992) FEMS Microbiol Lett , vol.88 , pp. 181-198
    • Jetten, M.1    Stams, A.J.M.2    Zehnder, A.J.B.3
  • 28
    • 49549142424 scopus 로고
    • A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp
    • Hoor AT-T. 1975. A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov. Neth J Sea Res 9:344-350.
    • (1975) nov. Neth J Sea Res , vol.9 , pp. 344-350
    • Hoor, A.T.-T.1
  • 32
    • 40549104438 scopus 로고    scopus 로고
    • Molecular ecology techniques for the study of aerobic methanotrophs
    • McDonald IR, Bodrossy L, Chen Y, Murrell JC. 2008. Molecular ecology techniques for the study of aerobic methanotrophs. Appl Environ Microbiol 74:1305-1315. http://dx.doi.org/10.1128/AEM.02233-07.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1305-1315
    • McDonald, I.R.1    Bodrossy, L.2    Chen, Y.3    Murrell, J.C.4
  • 33
    • 77953326699 scopus 로고    scopus 로고
    • Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog
    • Cadillo-Quiroz H, Yavitt JB, Zinder SH, Thies JE. 2010. Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog. Microb Ecol 59:757-767. http:// dx.doi.org/10.1007/s00248-009-9628-3.
    • (2010) Microb Ecol , vol.59 , pp. 757-767
    • Cadillo-Quiroz, H.1    Yavitt, J.B.2    Zinder, S.H.3    Thies, J.E.4
  • 34
    • 84986394216 scopus 로고
    • Oxygen sensitivity of methanogenic bacteria
    • Kiener A, Leisinger T. 1983. Oxygen sensitivity of methanogenic bacteria. Syst Appl Microbiol 4:305-312. http://dx.doi.org/10.1016/S0723-2020(83)80017-4.
    • (1983) Syst Appl Microbiol , vol.4 , pp. 305-312
    • Kiener, A.1    Leisinger, T.2
  • 35
    • 79957846434 scopus 로고    scopus 로고
    • Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen
    • Angel R, Matthies D, Conrad R. 2011. Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen. PLoS One 6:e20453. http://dx.doi.org/10.1371/journal.pone.0020453.
    • (2011) PLoS One , vol.6
    • Angel, R.1    Matthies, D.2    Conrad, R.3
  • 36
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Grosskopf R, Stubner S, Liesack W. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microbiol 64:4983-4989.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4983-4989
    • Grosskopf, R.1    Stubner, S.2    Liesack, W.3
  • 38
    • 34249937959 scopus 로고    scopus 로고
    • Yet-to-be cultured microorganisms relevant to methane fermentation processes
    • Sekiguchi Y. 2006. Yet-to-be cultured microorganisms relevant to methane fermentation processes. Microb Environ 21:1-15. http://dx.doi.org/ 10.1264/jsme2.21.1.
    • (2006) Microb Environ , vol.21 , pp. 1-15
    • Sekiguchi, Y.1
  • 39
    • 77952088961 scopus 로고    scopus 로고
    • Biochemical cycling in the rhizosphere having an impact on global change
    • Philippot L, Hallin S, Börjesson G, Baggs EM. 2009. Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil 321: 61-81. http://dx.doi.org/10.1007/s11104-008-9796-9.
    • (2009) Plant Soil , vol.321 , pp. 61-81
    • Philippot, L.1    Hallin, S.2    Börjesson, G.3    Baggs, E.M.4
  • 40
  • 41
    • 0024485037 scopus 로고
    • Processes involved in formation and emission of methane in rice paddies
    • Schütz H, Seiler W, Conrad R. 1989. Processes involved in formation and emission of methane in rice paddies. Biogeochemistry 7:33-53. http:// dx.doi.org/10.1007/BF00000896.
    • (1989) Biogeochemistry , vol.7 , pp. 33-53
    • Schütz, H.1    Seiler, W.2    Conrad, R.3
  • 47
    • 79953747793 scopus 로고    scopus 로고
    • A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs
    • Tavormina PL, Orphan VJ, Kalyuzhnaya MG, Jetten MS, Klotz MG. 2011. A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environ Microbiol Rep 3:91-100. http://dx.doi.org/10.1111/ j.1758-2229.2010.00192.x.
    • (2011) Environ Microbiol Rep , vol.3 , pp. 91-100
    • Tavormina, P.L.1    Orphan, V.J.2    Kalyuzhnaya, M.G.3    Jetten, M.S.4    Klotz, M.G.5
  • 48
    • 48249112161 scopus 로고    scopus 로고
    • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp
    • Baani M, Liesack W. 2008. Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain sc2. Proc Natl Acad Sci U S A 105:10203-10208. http:// dx.doi.org/10.1073/pnas.0702643105.
    • (2008) strain sc2. Proc Natl Acad Sci U S A , vol.105 , pp. 10203-10208
    • Baani, M.1    Liesack, W.2
  • 49
    • 0031754775 scopus 로고    scopus 로고
    • Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction
    • Beliaev AS, Saffarini DA. 1998. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J Bacteriol 180:6292-6297.
    • (1998) J Bacteriol , vol.180 , pp. 6292-6297
    • Beliaev, A.S.1    Saffarini, D.A.2
  • 50
    • 34250639301 scopus 로고    scopus 로고
    • Respiration of metal (hydr)oxides by Shewanella and Geobacter: A key role for multihaem c-type cytochromes
    • Shi L, Squier TC, Zachara JM, Fredrickson JK. 2007. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol Microbiol 65:12-20. http://dx.doi.org/10.1111/ j.1365-2958.2007.05783.x.
    • (2007) Mol Microbiol , vol.65 , pp. 12-20
    • Shi, L.1    Squier, T.C.2    Zachara, J.M.3    Fredrickson, J.K.4
  • 52
    • 47549119041 scopus 로고    scopus 로고
    • Methanogenic archaea: Ecologically relevant differences in energy conservation
    • Thauer RK, Kaster A.-K, Seedorf H, Buckel W, Hedderich R. 2008. Methanogenic archaea: ecologically relevant differences in energy conservation. Nat Rev Microbiol 6:579-591. http://dx.doi.org/10.1038/ nrmicro1931.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 579-591
    • Thauer, R.K.1    Kaster, A.-K.2    Seedorf, H.3    Buckel, W.4    Hedderich, R.5
  • 53
    • 0020660776 scopus 로고
    • Sulfate reducers can outcompete methanogens at freshwater sulfate concentrations
    • Lovley DR, Klug MJ. 1983. Sulfate reducers can outcompete methanogens at freshwater sulfate concentrations. Appl Environ Microbiol 45: 187-192.
    • (1983) Appl Environ Microbiol , vol.45 , pp. 187-192
    • Lovley, D.R.1    Klug, M.J.2
  • 54
    • 3542992864 scopus 로고
    • Why do sulfate-reducing bacteria outcompete methanogenic bacteria for substrates?
    • Kristjansson JK, Schönheit P. 1983. Why do sulfate-reducing bacteria outcompete methanogenic bacteria for substrates? Oecologia 60:264-266. http://dx.doi.org/10.1007/BF00379530.
    • (1983) Oecologia , vol.60 , pp. 264-266
    • Kristjansson, J.K.1    Schönheit, P.2
  • 55
    • 0042709553 scopus 로고    scopus 로고
    • Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments
    • Roden EE, Wetzel RG. 2003. Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments. Microb Ecol 45:252-258. http://dx.doi.org/10.1007/s00248-002-1037-9.
    • (2003) Microb Ecol , vol.45 , pp. 252-258
    • Roden, E.E.1    Wetzel, R.G.2
  • 56
    • 0032031349 scopus 로고    scopus 로고
    • Effects of nitrate, nitrite, NO and N2O on methanogenesis and other redox processes in anoxic rice field soil
    • Klüber H, Conrad R. 1998. Effects of nitrate, nitrite, NO and N2O on methanogenesis and other redox processes in anoxic rice field soil. FEMS Microbiol Ecol 25:301-318. http://dx.doi.org/10.1016/S0168-6496(98)00011-7.
    • (1998) FEMS Microbiol Ecol , vol.25 , pp. 301-318
    • Klüber, H.1    Conrad, R.2
  • 57
    • 0031958945 scopus 로고    scopus 로고
    • Inhibitory effects of nitrate, nitrite, NO and N2O on methanogenesis by Methanosarcina barkeri and Methanobacterium bryantii
    • Klüber H, Conrad R. 1998. Inhibitory effects of nitrate, nitrite, NO and N2O on methanogenesis by Methanosarcina barkeri and Methanobacterium bryantii. FEMS Microbiol Ecol 25:331-339. http://dx.doi.org/ 10.1016/S0168-6496(97)00102-5.
    • (1998) FEMS Microbiol Ecol , vol.25 , pp. 331-339
    • Klüber, H.1    Conrad, R.2
  • 58
    • 75549083713 scopus 로고    scopus 로고
    • Plant community, primary productivity, and environmental conditions following wetland re-establishment in the Sacramento-San Joaquín Delta, California
    • Miller RL, Fujii R. 2010. Plant community, primary productivity, and environmental conditions following wetland re-establishment in the Sacramento-San Joaquín Delta, California. Wetlands Ecol Manage 18: 1-16. http://dx.doi.org/10.1007/s11273-009-9143-9.
    • (2010) Wetlands Ecol Manage , vol.18 , pp. 1-16
    • Miller, R.L.1    Fujii, R.2
  • 59
    • 0028607715 scopus 로고
    • Improved coring device for measuring soil bulk-density in a Louisiana deltaic marsh
    • Hargis TG, Twilley RR. 1994. Improved coring device for measuring soil bulk-density in a Louisiana deltaic marsh. J Sediment Res 64:681-683. http://dx.doi.org/10.1306/D4267E60-2B26-11D7-8648000102C1865D.
    • (1994) J Sediment Res , vol.64 , pp. 681-683
    • Hargis, T.G.1    Twilley, R.R.2
  • 60
    • 77951498638 scopus 로고    scopus 로고
    • Experimental factors affecting PCRbased estimates of microbial species richness and evenness
    • Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, Hugenholtz P. 2010. Experimental factors affecting PCRbased estimates of microbial species richness and evenness. ISME J 4:642-647. http://dx.doi.org/10.1038/ismej.2009.153.
    • (2010) ISME J , vol.4 , pp. 642-647
    • Engelbrektson, A.1    Kunin, V.2    Wrighton, K.C.3    Zvenigorodsky, N.4    Chen, F.5    Ochman, H.6    Hugenholtz, P.7
  • 61
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: Pyrosequencing errors can lead to artificial inflation of diversity estimates
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. 2010. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12:118-123. http://dx.doi.org/ 10.1111/j.1462-2920.2009.02051.x.
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 62
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamin Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B (Methodol) 57:289-300.
    • (1995) J R Stat Soc B (Methodol) , vol.57 , pp. 289-300
    • Benjamin, Y.1    Hochberg, Y.2
  • 63
    • 84923315717 scopus 로고    scopus 로고
    • Improved assemblies using a sourceagnostic pipeline for MetaGenomic assembly by merging (MeGAMerge) of contigs
    • Scholz M, Lo CC, Chain PS. 2014. Improved assemblies using a sourceagnostic pipeline for MetaGenomic assembly by merging (MeGAMerge) of contigs. Sci Rep 4:6480. http://dx.doi.org/10.1038/srep06480.
    • (2014) Sci Rep , vol.4 , pp. 6480
    • Scholz, M.1    Lo, C.C.2    Chain, P.S.3
  • 64
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http:// dx.doi.org/10.1093/bioinformatics/btp324.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 67
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. http:// dx.doi.org/10.1186/1471-2105-5-113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 68
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321. http://dx.doi.org/10.1093/sysbio/syq010.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 69
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol 25:1307-1320. http://dx.doi.org/10.1093/molbev/ msn067.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2


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