-
2
-
-
84876078132
-
Wetlands, carbon, and climate change
-
Mitsch WJ, Bernal B, Nahlik AM, Mander Ul, Zhang L, Anderson CJ, Jørgensen SE, BrixH. 2013. Wetlands, carbon, and climate change. Landscape Ecol 28:583-597. http://dx.doi.org/10.1007/s10980-012-9758-8.
-
(2013)
Landscape Ecol
, vol.28
, pp. 583-597
-
-
Mitsch, W.J.1
Bernal, B.2
Nahlik, A.M.3
Mander Ul, Z.L.4
Anderson, C.J.5
Jørgensen, S.E.6
Brix, H.7
-
3
-
-
84878540924
-
Land-cover change in the conterminous United States from 1973 to 2000
-
Sleeter BM, Sohl TL, Loveland TR, Auch RF, Acevedo W, Drummond MA, Sayler KL, Stehman SV. 2013. Land-cover change in the conterminous United States from 1973 to 2000. Glob Environ Change 23:733-748. http://dx.doi.org/10.1016/j.gloenvcha.2013.03.006.
-
(2013)
Glob Environ Change
, vol.23
, pp. 733-748
-
-
Sleeter, B.M.1
Sohl, T.L.2
Loveland, T.R.3
Auch, R.F.4
Acevedo, W.5
Drummond, M.A.6
Sayler, K.L.7
Stehman, S.V.8
-
4
-
-
0042475178
-
The settlement geography of the Sacramento-San Joaquín Delta, California
-
Stanford University, Stanford, CA
-
Thompson J. 1957. The settlement geography of the Sacramento-San Joaquín Delta, California. Ph.D. thesis. Stanford University, Stanford, CA.
-
(1957)
Ph.D. thesis
-
-
Thompson, J.1
-
5
-
-
0029659721
-
Subsidence of agricultural lands in the Sacramento-San Joaquín Delta, California: Role of aqueous and gaseous carbon fluxes
-
Deverel SJ, Rojstaczer S. 1996. Subsidence of agricultural lands in the Sacramento-San Joaquín Delta, California: role of aqueous and gaseous carbon fluxes. Water Resour Res 32:2359-2367. http://dx.doi.org/ 10.1029/96WR01338.
-
(1996)
Water Resour Res
, vol.32
, pp. 2359-2367
-
-
Deverel, S.J.1
Rojstaczer, S.2
-
6
-
-
70350086697
-
The legacy of wetland drainage on the remaining peat in the Sacramento-San Joaquín Delta, California, USA
-
Drexler JZ, Fontaine CS, Deverel SJ. 2009. The legacy of wetland drainage on the remaining peat in the Sacramento-San Joaquín Delta, California, USA. Wetlands 29:372-386. http://dx.doi.org/10.1672/08-97.1.
-
(2009)
Wetlands
, vol.29
, pp. 372-386
-
-
Drexler, J.Z.1
Fontaine, C.S.2
Deverel, S.J.3
-
7
-
-
78649888331
-
Subsidence reversal in a re-established wetland in the Sacramento-San Joaquín Delta, California, USA
-
Miller RL, Fram MS, Fujii R, Wheeler G. 2008. Subsidence reversal in a re-established wetland in the Sacramento-San Joaquín Delta, California, USA. San Francisco Estuary Watershed Sci 6:1-20. http:// escholarship.org/uc/item/5j76502x
-
(2008)
San Francisco Estuary Watershed Sci
, vol.6
, pp. 1-20
-
-
Miller, R.L.1
Fram, M.S.2
Fujii, R.3
Wheeler, G.4
-
8
-
-
35848952632
-
Couplings between changes in the climate system and biogeochemistry
-
In Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL. (ed) Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom
-
Denman KL, Brasseur G, Chidthaisong A, Ciais P, Cox PM, Dickinson RE, Hauglustaine D, Heinze C, Holland E, Jacob D, Lohmann U, Ramachandran S, Dias PLDS, Wofsy SC, Zhang X. 2007. Couplings between changes in the climate system and biogeochemistry, p 499-587. In Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL. (ed), Climate change 2007: the physical science basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom.
-
(2007)
Climate change 2007: The physical science basis
, vol.2007
, pp. 499-587
-
-
Denman, K.L.1
Brasseur, G.2
Chidthaisong, A.3
Ciais, P.4
Cox, P.M.5
Dickinson, R.E.6
Hauglustaine, D.7
Heinze, C.8
Holland, E.9
Jacob, D.10
Lohmann, U.11
Ramachandran, S.12
Dias, P.L.D.S.13
Wofsy, S.C.14
Zhang, X.15
-
9
-
-
0035157631
-
Greenhouse carbon balance of wetlands: Methane emission versus carbon sequestration
-
Whiting GJ, Chanton JP. 2001. Greenhouse carbon balance of wetlands: methane emission versus carbon sequestration. Tellus B 53:521-528. http://dx.doi.org/10.1034/j.1600-0889.2001.530501.x.
-
(2001)
Tellus B
, vol.53
, pp. 521-528
-
-
Whiting, G.J.1
Chanton, J.P.2
-
10
-
-
84863725220
-
Carbon gas fluxes in re-established wetlands on organic soils differ relative to plant community and hydrology
-
Miller RL. 2011. Carbon gas fluxes in re-established wetlands on organic soils differ relative to plant community and hydrology. Wetlands 31: 1055-1066. http://dx.doi.org/10.1007/s13157-011-0215-2.
-
(2011)
Wetlands
, vol.31
, pp. 1055-1066
-
-
Miller, R.L.1
-
11
-
-
77951023329
-
Carbon storage and fluxes within freshwater wetlands: A critical review
-
Kayranli B, Scholz M, Mustafa A, Hedmark Å. 2010. Carbon storage and fluxes within freshwater wetlands: a critical review. Wetlands 30:111-124. http://dx.doi.org/10.1007/s13157-009-0003-4.
-
(2010)
Wetlands
, vol.30
, pp. 111-124
-
-
Kayranli, B.1
Scholz, M.2
Mustafa, A.3
Hedmark, Å.4
-
12
-
-
73149099698
-
Methane emission from natural wetlands: Interplay between emergent macrophytes and soil microbial processes
-
Laanbroek HJ. 2010. Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes. A minireview. Ann Bot 105:141-153. http://dx.doi.org/10.1093/aob/mcp201.
-
(2010)
A minireview. Ann Bot
, vol.105
, pp. 141-153
-
-
Laanbroek, H.J.1
-
13
-
-
0035043535
-
Production, oxidation, emission and consumption of methane by soils: A review
-
Le Mer J, Roger JP. 2001. Production, oxidation, emission and consumption of methane by soils: a review. Eur J Soil Biol 37:25-50. http:// dx.doi.org/10.1016/S1164-5563(01)01067-6.
-
(2001)
Eur J Soil Biol
, vol.37
, pp. 25-50
-
-
Le Mer, J.1
Roger, J.P.2
-
14
-
-
84875874727
-
Methane emissions from wetlands: Biogeochemical, microbial, and modeling perspectives from local to global scales
-
Bridgham SD, Cadillo-Quiroz H, Keller JK, Zhuang Q. 2013. Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales. Glob Chang Biol 19:1325-1346. http://dx.doi.org/10.1111/gcb.12131.
-
(2013)
Glob Chang Biol
, vol.19
, pp. 1325-1346
-
-
Bridgham, S.D.1
Cadillo-Quiroz, H.2
Keller, J.K.3
Zhuang, Q.4
-
15
-
-
84936946503
-
Hydrologic and water-quality conditions during restoration of theWoodRiver wetland, upper Klamath River Basin, Oregon, 2003-05: U.S
-
U.S. Department of the Interior, U.S. Geological Survey, Reston, VA
-
Carpenter K, Snyder D, Duff J, Triska F, Lee K, Avanzino R, Sobieszczyk S. 2009. Hydrologic and water-quality conditions during restoration of theWoodRiver wetland, upper Klamath River Basin, Oregon, 2003-05: U.S. Geological Survey Scientific Investigations Report 2009-5004. U.S. Department of the Interior, U.S. Geological Survey, Reston, VA.
-
(2009)
Geological Survey Scientific Investigations Report 2009-5004
-
-
Carpenter, K.1
Snyder, D.2
Duff, J.3
Triska, F.4
Lee, K.5
Avanzino, R.6
Sobieszczyk, S.7
-
17
-
-
67549099704
-
Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
-
Rivière D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S, Weissenbach J, Li T, Camacho P, Sghir A. 2009. Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 3:700-714. http://dx.doi.org/10.1038/ismej.2009.2.
-
(2009)
ISME J
, vol.3
, pp. 700-714
-
-
Rivière, D.1
Desvignes, V.2
Pelletier, E.3
Chaussonnerie, S.4
Guermazi, S.5
Weissenbach, J.6
Li, T.7
Camacho, P.8
Sghir, A.9
-
18
-
-
0021580075
-
The structure and continuity of the lacunar system of the seagrass Halophila ovalis (R
-
Roberts DG, McComb AJ. 1984. The structure and continuity of the lacunar system of the seagrass Halophila ovalis (R. Br.) Hook f. (Hydrocharitaceae). Aquat Bot 18:377-388.
-
(1984)
Br.) Hook f. (Hydrocharitaceae). Aquat Bot
, vol.18
, pp. 377-388
-
-
Roberts, D.G.1
McComb, A.J.2
-
19
-
-
0001494726
-
Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L
-
Caffrey JM, Kemp WM. 1991. Seasonal and spatial patterns of oxygen production, respiration and root-rhizome release in Potamogeton perfoliatus L. and Zostera marina L. Aquat Bot 40:109-128. http://dx.doi.org/ 10.1016/0304-3770(91)90090-R.
-
(1991)
And Zostera marina L. Aquat Bot
, vol.40
, pp. 109-128
-
-
Caffrey, J.M.1
Kemp, W.M.2
-
21
-
-
0042739619
-
The effect of vascular plants on carbon turnover and methane emissions from a tundra wetland
-
Ström L, Ekberg A, Mastepanov M, Røjle Christensen T. 2003. The effect of vascular plants on carbon turnover and methane emissions from a tundra wetland. Glob Change Biol 9:1185-1192. http://dx.doi.org/ 10.1046/j.1365-2486.2003.00655.x.
-
(2003)
Glob Change Biol
, vol.9
, pp. 1185-1192
-
-
Ström, L.1
Ekberg, A.2
Mastepanov, M.3
Røjle Christensen, T.4
-
22
-
-
33745942317
-
The role of root exudates in rhizosphere interactions with plants and other organisms
-
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM. 2006. The role of root exudates in rhizosphere interactions with plants and other organisms. Annu Rev Plant Biol 57:233-266. http://dx.doi.org/10.1146/ annurev.arplant.57.032905.105159.
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 233-266
-
-
Bais, H.P.1
Weir, T.L.2
Perry, L.G.3
Gilroy, S.4
Vivanco, J.M.5
-
23
-
-
41349083576
-
Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea
-
Liu Y, Whitman WB. 2008. Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Ann N Y Acad Sci 1125:171-189. http://dx.doi.org/10.1196/annals.1419.019.
-
(2008)
Ann N Y Acad Sci
, vol.1125
, pp. 171-189
-
-
Liu, Y.1
Whitman, W.B.2
-
24
-
-
78651463463
-
Methanoregula boonei gen
-
Bräuer SL, Cadillo-Quiroz H, Ward RJ, Yavitt JB, Zinder SH. 2011. Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog. Int J Syst Evol Microbiol 61:45-52. http:// dx.doi.org/10.1099/ijs.0.021782-0.
-
(2011)
Nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog. Int J Syst Evol Microbiol
, vol.61
, pp. 45-52
-
-
Bräuer, S.L.1
Cadillo-Quiroz, H.2
Ward, R.J.3
Yavitt, J.B.4
Zinder, S.H.5
-
25
-
-
78650046547
-
Methanoregula formicica sp
-
Yashiro Y, Sakai S, Ehara M, Miyazaki M, Yamaguchi T, Imachi H. 2011. Methanoregula formicica sp. nov., a methane-producing archaeon isolated from methanogenic sludge. Int J Syst Evol Microbiol 61:53-59. http://dx.doi.org/10.1099/ijs.0.014811-0.
-
(2011)
nov., a methane-producing archaeon isolated from methanogenic sludge. Int J Syst Evol Microbiol
, vol.61
, pp. 53-59
-
-
Yashiro, Y.1
Sakai, S.2
Ehara, M.3
Miyazaki, M.4
Yamaguchi, T.5
Imachi, H.6
-
26
-
-
0026780594
-
Methanogenesis from acetate: A comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp
-
Jetten M, Stams AJM, Zehnder AJB. 1992. Methanogenesis from acetate: a comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp. FEMS Microbiol Lett 88:181-198. http://dx.doi.org/ 10.1016/0378-1097(92)90802-U.
-
(1992)
FEMS Microbiol Lett
, vol.88
, pp. 181-198
-
-
Jetten, M.1
Stams, A.J.M.2
Zehnder, A.J.B.3
-
28
-
-
49549142424
-
A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp
-
Hoor AT-T. 1975. A new type of thiosulphate oxidizing, nitrate reducing microorganism: Thiomicrospira denitrificans sp. nov. Neth J Sea Res 9:344-350.
-
(1975)
nov. Neth J Sea Res
, vol.9
, pp. 344-350
-
-
Hoor, A.T.-T.1
-
29
-
-
32444438519
-
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans
-
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP. 2006. The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans. J Bacteriol 188:1473-1488. http:// dx.doi.org/10.1128/JB.188.4.1473-1488.2006.
-
(2006)
J Bacteriol
, vol.188
, pp. 1473-1488
-
-
Beller, H.R.1
Chain, P.S.2
Letain, T.E.3
Chakicherla, A.4
Larimer, F.W.5
Richardson, P.M.6
Coleman, M.A.7
Wood, A.P.8
Kelly, D.P.9
-
30
-
-
81855206235
-
Geobacter: The microbe electric's physiology, ecology, and practical applications
-
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A.-E, Holmes DE, Franks AE, Orellana R, Risso C, Nevin KP, Robert KP. 2011. Geobacter: the microbe electric's physiology, ecology, and practical applications. Adv Microb Physiol 59:1-100. http://dx.doi.org/10.1016/B978-0-12-387661-4.00004-5.
-
(2011)
Adv Microb Physiol
, vol.59
, pp. 1-100
-
-
Lovley, D.R.1
Ueki, T.2
Zhang, T.3
Malvankar, N.S.4
Shrestha, P.M.5
Flanagan, K.A.6
Aklujkar, M.7
Butler, J.E.8
Giloteaux, L.9
Rotaru, A.-E.10
Holmes, D.E.11
Franks, A.E.12
Orellana, R.13
Risso, C.14
Nevin, K.P.15
Robert, K.P.16
-
32
-
-
40549104438
-
Molecular ecology techniques for the study of aerobic methanotrophs
-
McDonald IR, Bodrossy L, Chen Y, Murrell JC. 2008. Molecular ecology techniques for the study of aerobic methanotrophs. Appl Environ Microbiol 74:1305-1315. http://dx.doi.org/10.1128/AEM.02233-07.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1305-1315
-
-
McDonald, I.R.1
Bodrossy, L.2
Chen, Y.3
Murrell, J.C.4
-
33
-
-
77953326699
-
Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog
-
Cadillo-Quiroz H, Yavitt JB, Zinder SH, Thies JE. 2010. Diversity and community structure of archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog. Microb Ecol 59:757-767. http:// dx.doi.org/10.1007/s00248-009-9628-3.
-
(2010)
Microb Ecol
, vol.59
, pp. 757-767
-
-
Cadillo-Quiroz, H.1
Yavitt, J.B.2
Zinder, S.H.3
Thies, J.E.4
-
34
-
-
84986394216
-
Oxygen sensitivity of methanogenic bacteria
-
Kiener A, Leisinger T. 1983. Oxygen sensitivity of methanogenic bacteria. Syst Appl Microbiol 4:305-312. http://dx.doi.org/10.1016/S0723-2020(83)80017-4.
-
(1983)
Syst Appl Microbiol
, vol.4
, pp. 305-312
-
-
Kiener, A.1
Leisinger, T.2
-
35
-
-
79957846434
-
Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen
-
Angel R, Matthies D, Conrad R. 2011. Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen. PLoS One 6:e20453. http://dx.doi.org/10.1371/journal.pone.0020453.
-
(2011)
PLoS One
, vol.6
-
-
Angel, R.1
Matthies, D.2
Conrad, R.3
-
36
-
-
0040336333
-
Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
-
Grosskopf R, Stubner S, Liesack W. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microbiol 64:4983-4989.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4983-4989
-
-
Grosskopf, R.1
Stubner, S.2
Liesack, W.3
-
37
-
-
16144362010
-
Wide diversity of Crenarchaeota
-
Hershberger KL, Barns SM, Reysenbach A.-L, Dawson SC, Pace NR. 1996. Wide diversity of Crenarchaeota. Nature 384:420. http://dx.doi.org/ 10.1038/384420a0.
-
(1996)
Nature
, vol.384
, pp. 420
-
-
Hershberger, K.L.1
Barns, S.M.2
Reysenbach, A.-L.3
Dawson, S.C.4
Pace, N.R.5
-
38
-
-
34249937959
-
Yet-to-be cultured microorganisms relevant to methane fermentation processes
-
Sekiguchi Y. 2006. Yet-to-be cultured microorganisms relevant to methane fermentation processes. Microb Environ 21:1-15. http://dx.doi.org/ 10.1264/jsme2.21.1.
-
(2006)
Microb Environ
, vol.21
, pp. 1-15
-
-
Sekiguchi, Y.1
-
39
-
-
77952088961
-
Biochemical cycling in the rhizosphere having an impact on global change
-
Philippot L, Hallin S, Börjesson G, Baggs EM. 2009. Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil 321: 61-81. http://dx.doi.org/10.1007/s11104-008-9796-9.
-
(2009)
Plant Soil
, vol.321
, pp. 61-81
-
-
Philippot, L.1
Hallin, S.2
Börjesson, G.3
Baggs, E.M.4
-
40
-
-
0031464061
-
Methane emission from rice: Stable isotopes, diurnal variations, and CO2 exchange
-
Chanton JP, Whiting GJ, Blair NE, Lindau CW, Bollich PK. 1997. Methane emission from rice: stable isotopes, diurnal variations, and CO2 exchange. Global Biogeochem Cycles 11:15-27. http://dx.doi.org/ 10.1029/96GB03761.
-
(1997)
Global Biogeochem Cycles
, vol.11
, pp. 15-27
-
-
Chanton, J.P.1
Whiting, G.J.2
Blair, N.E.3
Lindau, C.W.4
Bollich, P.K.5
-
41
-
-
0024485037
-
Processes involved in formation and emission of methane in rice paddies
-
Schütz H, Seiler W, Conrad R. 1989. Processes involved in formation and emission of methane in rice paddies. Biogeochemistry 7:33-53. http:// dx.doi.org/10.1007/BF00000896.
-
(1989)
Biogeochemistry
, vol.7
, pp. 33-53
-
-
Schütz, H.1
Seiler, W.2
Conrad, R.3
-
42
-
-
84906944378
-
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
-
Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG. 2014. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environ Microbiol 16:2659-2671. http:// dx.doi.org/10.1111/1462-2920.12250.
-
(2014)
Environ Microbiol
, vol.16
, pp. 2659-2671
-
-
Logares, R.1
Sunagawa, S.2
Salazar, G.3
Cornejo-Castillo, F.M.4
Ferrera, I.5
Sarmento, H.6
Hingamp, P.7
Ogata, H.8
de Vargas, C.9
Lima-Mendez, G.10
Raes, J.11
Poulain, J.12
Jaillon, O.13
Wincker, P.14
Kandels-Lewis, S.15
Karsenti, E.16
Bork, P.17
Acinas, S.G.18
-
43
-
-
0027374969
-
Revised taxonomy of the methanotrophs: Description of Methylobacter gen
-
Bowman JP, Sly LI, Nichols PD, Hayward AC. 1993. Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs. Int J Syst Bacteriol 43:735-753.
-
(1993)
nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs. Int J Syst Bacteriol
, vol.43
, pp. 735-753
-
-
Bowman, J.P.1
Sly, L.I.2
Nichols, P.D.3
Hayward, A.C.4
-
44
-
-
36849030274
-
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
-
Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Feng L, Wang L, Alam M. 2007. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450:879-882. http://dx.doi.org/10.1038/nature06411.
-
(2007)
Nature
, vol.450
, pp. 879-882
-
-
Dunfield, P.F.1
Yuryev, A.2
Senin, P.3
Smirnova, A.V.4
Stott, M.B.5
Hou, S.6
Ly, B.7
Saw, J.H.8
Zhou, Z.9
Ren, Y.10
Wang, J.11
Mountain, B.W.12
Crowe, M.A.13
Weatherby, T.M.14
Bodelier, P.L.15
Liesack, W.16
Feng, L.17
Wang, L.18
Alam, M.19
-
45
-
-
77950258771
-
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
-
Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJ, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJ, Janssen-Megens EM, Francoijs KJ, Stunnenberg H, Weissenbach J, Jetten MS, Strous M. 2010. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 464:543-548. http://dx.doi.org/ 10.1038/nature08883.
-
(2010)
Nature
, vol.464
, pp. 543-548
-
-
Ettwig, K.F.1
Butler, M.K.2
Le Paslier, D.3
Pelletier, E.4
Mangenot, S.5
Kuypers, M.M.6
Schreiber, F.7
Dutilh, B.E.8
Zedelius, J.9
de Beer, D.10
Gloerich, J.11
Wessels, H.J.12
van Alen, T.13
Luesken, F.14
Wu, M.L.15
van de Pas-Schoonen, K.T.16
Op den Camp, H.J.17
Janssen-Megens, E.M.18
Francoijs, K.J.19
Stunnenberg, H.20
Weissenbach, J.21
Jetten, M.S.22
Strous, M.23
more..
-
46
-
-
27444433838
-
Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2
-
Theisen AR, Ali MH, Radajewski S, Dumont MG, Dunfield PF, Mc-Donald IR, Dedysh SN, Miguez CB, Murrell JC. 2005. Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2. Mol Microbiol 58:682-692. http://dx.doi.org/10.1111/j.1365-2958.2005.04861.x.
-
(2005)
Mol Microbiol
, vol.58
, pp. 682-692
-
-
Theisen, A.R.1
Ali, M.H.2
Radajewski, S.3
Dumont, M.G.4
Dunfield, P.F.5
Mc-Donald, I.R.6
Dedysh, S.N.7
Miguez, C.B.8
Murrell, J.C.9
-
47
-
-
79953747793
-
A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs
-
Tavormina PL, Orphan VJ, Kalyuzhnaya MG, Jetten MS, Klotz MG. 2011. A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environ Microbiol Rep 3:91-100. http://dx.doi.org/10.1111/ j.1758-2229.2010.00192.x.
-
(2011)
Environ Microbiol Rep
, vol.3
, pp. 91-100
-
-
Tavormina, P.L.1
Orphan, V.J.2
Kalyuzhnaya, M.G.3
Jetten, M.S.4
Klotz, M.G.5
-
48
-
-
48249112161
-
Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp
-
Baani M, Liesack W. 2008. Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain sc2. Proc Natl Acad Sci U S A 105:10203-10208. http:// dx.doi.org/10.1073/pnas.0702643105.
-
(2008)
strain sc2. Proc Natl Acad Sci U S A
, vol.105
, pp. 10203-10208
-
-
Baani, M.1
Liesack, W.2
-
49
-
-
0031754775
-
Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction
-
Beliaev AS, Saffarini DA. 1998. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J Bacteriol 180:6292-6297.
-
(1998)
J Bacteriol
, vol.180
, pp. 6292-6297
-
-
Beliaev, A.S.1
Saffarini, D.A.2
-
50
-
-
34250639301
-
Respiration of metal (hydr)oxides by Shewanella and Geobacter: A key role for multihaem c-type cytochromes
-
Shi L, Squier TC, Zachara JM, Fredrickson JK. 2007. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol Microbiol 65:12-20. http://dx.doi.org/10.1111/ j.1365-2958.2007.05783.x.
-
(2007)
Mol Microbiol
, vol.65
, pp. 12-20
-
-
Shi, L.1
Squier, T.C.2
Zachara, J.M.3
Fredrickson, J.K.4
-
51
-
-
84863581057
-
Identification and characterization of MtoA: A decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1
-
Liu J, Wang Z, Belchik SM, Edwards MJ, Liu C, Kennedy DW, Merkley ED, Lipton MS, Butt JN, Richardson DJ, Zachara JM, Fredrickson JK, Rosso KM, Shi L. 2012. Identification and characterization of MtoA: a decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1. Front Microbiol 3:37. http:// dx.doi.org/10.3389/fmicb.2012.00037.
-
(2012)
Front Microbiol
, vol.3
, pp. 37
-
-
Liu, J.1
Wang, Z.2
Belchik, S.M.3
Edwards, M.J.4
Liu, C.5
Kennedy, D.W.6
Merkley, E.D.7
Lipton, M.S.8
Butt, J.N.9
Richardson, D.J.10
Zachara, J.M.11
Fredrickson, J.K.12
Rosso, K.M.13
Shi, L.14
-
52
-
-
47549119041
-
Methanogenic archaea: Ecologically relevant differences in energy conservation
-
Thauer RK, Kaster A.-K, Seedorf H, Buckel W, Hedderich R. 2008. Methanogenic archaea: ecologically relevant differences in energy conservation. Nat Rev Microbiol 6:579-591. http://dx.doi.org/10.1038/ nrmicro1931.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 579-591
-
-
Thauer, R.K.1
Kaster, A.-K.2
Seedorf, H.3
Buckel, W.4
Hedderich, R.5
-
53
-
-
0020660776
-
Sulfate reducers can outcompete methanogens at freshwater sulfate concentrations
-
Lovley DR, Klug MJ. 1983. Sulfate reducers can outcompete methanogens at freshwater sulfate concentrations. Appl Environ Microbiol 45: 187-192.
-
(1983)
Appl Environ Microbiol
, vol.45
, pp. 187-192
-
-
Lovley, D.R.1
Klug, M.J.2
-
54
-
-
3542992864
-
Why do sulfate-reducing bacteria outcompete methanogenic bacteria for substrates?
-
Kristjansson JK, Schönheit P. 1983. Why do sulfate-reducing bacteria outcompete methanogenic bacteria for substrates? Oecologia 60:264-266. http://dx.doi.org/10.1007/BF00379530.
-
(1983)
Oecologia
, vol.60
, pp. 264-266
-
-
Kristjansson, J.K.1
Schönheit, P.2
-
55
-
-
0042709553
-
Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments
-
Roden EE, Wetzel RG. 2003. Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments. Microb Ecol 45:252-258. http://dx.doi.org/10.1007/s00248-002-1037-9.
-
(2003)
Microb Ecol
, vol.45
, pp. 252-258
-
-
Roden, E.E.1
Wetzel, R.G.2
-
56
-
-
0032031349
-
Effects of nitrate, nitrite, NO and N2O on methanogenesis and other redox processes in anoxic rice field soil
-
Klüber H, Conrad R. 1998. Effects of nitrate, nitrite, NO and N2O on methanogenesis and other redox processes in anoxic rice field soil. FEMS Microbiol Ecol 25:301-318. http://dx.doi.org/10.1016/S0168-6496(98)00011-7.
-
(1998)
FEMS Microbiol Ecol
, vol.25
, pp. 301-318
-
-
Klüber, H.1
Conrad, R.2
-
57
-
-
0031958945
-
Inhibitory effects of nitrate, nitrite, NO and N2O on methanogenesis by Methanosarcina barkeri and Methanobacterium bryantii
-
Klüber H, Conrad R. 1998. Inhibitory effects of nitrate, nitrite, NO and N2O on methanogenesis by Methanosarcina barkeri and Methanobacterium bryantii. FEMS Microbiol Ecol 25:331-339. http://dx.doi.org/ 10.1016/S0168-6496(97)00102-5.
-
(1998)
FEMS Microbiol Ecol
, vol.25
, pp. 331-339
-
-
Klüber, H.1
Conrad, R.2
-
58
-
-
75549083713
-
Plant community, primary productivity, and environmental conditions following wetland re-establishment in the Sacramento-San Joaquín Delta, California
-
Miller RL, Fujii R. 2010. Plant community, primary productivity, and environmental conditions following wetland re-establishment in the Sacramento-San Joaquín Delta, California. Wetlands Ecol Manage 18: 1-16. http://dx.doi.org/10.1007/s11273-009-9143-9.
-
(2010)
Wetlands Ecol Manage
, vol.18
, pp. 1-16
-
-
Miller, R.L.1
Fujii, R.2
-
59
-
-
0028607715
-
Improved coring device for measuring soil bulk-density in a Louisiana deltaic marsh
-
Hargis TG, Twilley RR. 1994. Improved coring device for measuring soil bulk-density in a Louisiana deltaic marsh. J Sediment Res 64:681-683. http://dx.doi.org/10.1306/D4267E60-2B26-11D7-8648000102C1865D.
-
(1994)
J Sediment Res
, vol.64
, pp. 681-683
-
-
Hargis, T.G.1
Twilley, R.R.2
-
60
-
-
77951498638
-
Experimental factors affecting PCRbased estimates of microbial species richness and evenness
-
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, Hugenholtz P. 2010. Experimental factors affecting PCRbased estimates of microbial species richness and evenness. ISME J 4:642-647. http://dx.doi.org/10.1038/ismej.2009.153.
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
Ochman, H.6
Hugenholtz, P.7
-
61
-
-
73349110099
-
Wrinkles in the rare biosphere: Pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. 2010. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12:118-123. http://dx.doi.org/ 10.1111/j.1462-2920.2009.02051.x.
-
(2010)
Environ Microbiol
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
62
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamin Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B (Methodol) 57:289-300.
-
(1995)
J R Stat Soc B (Methodol)
, vol.57
, pp. 289-300
-
-
Benjamin, Y.1
Hochberg, Y.2
-
63
-
-
84923315717
-
Improved assemblies using a sourceagnostic pipeline for MetaGenomic assembly by merging (MeGAMerge) of contigs
-
Scholz M, Lo CC, Chain PS. 2014. Improved assemblies using a sourceagnostic pipeline for MetaGenomic assembly by merging (MeGAMerge) of contigs. Sci Rep 4:6480. http://dx.doi.org/10.1038/srep06480.
-
(2014)
Sci Rep
, vol.4
, pp. 6480
-
-
Scholz, M.1
Lo, C.C.2
Chain, P.S.3
-
64
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http:// dx.doi.org/10.1093/bioinformatics/btp324.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
65
-
-
84891800783
-
IMG/M 4 version of the integrated metagenome comparative analysis system
-
Markowitz VM, Chen I-MA, Chu K, Szeto E, Palaniappan K, Pillay M, Ratner A, Huang J, Pagani I, Tringe S, Huntemann M, Billis K, Varghese N, Tennessen K, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC. 2014. IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res 42(D1):D568-D573. http:// dx.doi.org/10.1093/nar/gkt919.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.D1
, pp. D568-D573
-
-
Markowitz, V.M.1
Chen, I.-M.A.2
Chu, K.3
Szeto, E.4
Palaniappan, K.5
Pillay, M.6
Ratner, A.7
Huang, J.8
Pagani, I.9
Tringe, S.10
Huntemann, M.11
Billis, K.12
Varghese, N.13
Tennessen, K.14
Mavromatis, K.15
Pati, A.16
Ivanova, N.N.17
Kyrpides, N.C.18
-
66
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. 2005. Comparative metagenomics of microbial communities. Science 308:554-557. http://dx.doi.org/10.1126/science.1107851.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
67
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. http:// dx.doi.org/10.1186/1471-2105-5-113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
68
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321. http://dx.doi.org/10.1093/sysbio/syq010.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
69
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol 25:1307-1320. http://dx.doi.org/10.1093/molbev/ msn067.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
|