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Volumn 93, Issue 6, 2015, Pages 522-532

Deciphering complex patterns of class-I HLA-peptide cross-reactivity via hierarchical grouping

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; HLA ANTIGEN CLASS 1; LIGAND; PEPTIDE; PROTEIN BINDING;

EID: 84936846569     PISSN: 08189641     EISSN: 14401711     Source Type: Journal    
DOI: 10.1038/icb.2015.3     Document Type: Article
Times cited : (9)

References (37)
  • 2
    • 82255164138 scopus 로고    scopus 로고
    • Towards a systems understanding of MHC class i and MHC class II antigen presentation
    • Neefjes J, Jongsma MLM, Paul P, Bakke O. Towards a systems understanding of MHC class I and MHC class II antigen presentation. Nat Rev Immunol 2011; 11: 823-836.
    • (2011) Nat Rev Immunol , vol.11 , pp. 823-836
    • Neefjes, J.1    Mlm, J.2    Paul, P.3    Bakke, O.4
  • 4
    • 0033676078 scopus 로고    scopus 로고
    • Comparison of HLA class i typing by serology with DNA typing in a Chinese population
    • Tan J, Tang X, Xie T. Comparison of HLA class I typing by serology with DNA typing in a Chinese population. Transplant Proc 2000; 32: 1859-1861.
    • (2000) Transplant Proc , vol.32 , pp. 1859-1861
    • Tan, J.1    Tang, X.2    Xie, T.3
  • 5
    • 35448930358 scopus 로고    scopus 로고
    • Sequencing-based typing of HLA
    • Hoppe B, Salama A. Sequencing-based typing of HLA. Methods Mol Med 2007; 134: 71-80.
    • (2007) Methods Mol Med , vol.134 , pp. 71-80
    • Hoppe, B.1    Salama, A.2
  • 6
    • 0033388724 scopus 로고    scopus 로고
    • Nine major HLA class i supertypes account for the vast preponderance of HLA-A and-B polymorphism
    • Sette A, Sidney J. Nine major HLA class I supertypes account for the vast preponderance of HLA-A and-B polymorphism. Immunogenetics 1999; 50: 201-212.
    • (1999) Immunogenetics , vol.50 , pp. 201-212
    • Sette, A.1    Sidney, J.2
  • 7
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker KC, Bednarek MA, Coligan JE. Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 1994; 152: 163-175.
    • (1994) J Immunol , vol.152 , pp. 163-175
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 10
    • 33846662153 scopus 로고    scopus 로고
    • Identifying HLA supertypes by learning distance functions
    • Hertz T, Yanover C. Identifying HLA supertypes by learning distance functions. Bioinformatics 2007; 23: e148-e155.
    • (2007) Bioinformatics , vol.23 , pp. e148-e155
    • Hertz, T.1    Yanover, C.2
  • 11
  • 12
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004; 431: 308-312.
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3    Snyder, M.4    Teichmann, S.A.5    Gerstein, M.6
  • 13
    • 84906283433 scopus 로고    scopus 로고
    • Review of biological network data and its applications
    • Yu D, Kim M, Xiao G, Hwang TH. Review of biological network data and its applications. Genomics Inform 2013; 11: 200-210.
    • (2013) Genomics Inform , vol.11 , pp. 200-210
    • Yu, D.1    Kim, M.2    Xiao, G.3    Hwang, T.H.4
  • 15
    • 60649117152 scopus 로고    scopus 로고
    • PocketMatch: A new algorithm to compare binding sites in protein structures
    • Yeturu K, Chandra N. PocketMatch: a new algorithm to compare binding sites in protein structures. BMC Bioinformatics 2008; 9: 543.
    • (2008) BMC Bioinformatics , vol.9 , pp. 543
    • Yeturu, K.1    Chandra, N.2
  • 16
    • 38949150854 scopus 로고    scopus 로고
    • Matt: Local flexibility AIDS protein multiple structure alignment
    • Menke M, Berger B, Cowen L. Matt: local flexibility aids protein multiple structure alignment. PLoS Comput Biol 2008; 4: e10.
    • (2008) PLoS Comput Biol , vol.4 , pp. e10
    • Menke, M.1    Berger, B.2    Cowen, L.3
  • 18
    • 0027753090 scopus 로고
    • Anchor residue motifs of HLA class-I-binding peptides analyzed by the direct binding of synthetic peptides to HLA class i alpha chains
    • Fruci D, Rovero P, Falasca G, Chersi A, Sorrentino R, Butler R et al. Anchor residue motifs of HLA class-I-binding peptides analyzed by the direct binding of synthetic peptides to HLA class I alpha chains. Hum Immunol 1993; 38: 187-192.
    • (1993) Hum Immunol , vol.38 , pp. 187-192
    • Fruci, D.1    Rovero, P.2    Falasca, G.3    Chersi, A.4    Sorrentino, R.5    Butler, R.6
  • 19
    • 1642407844 scopus 로고    scopus 로고
    • Identifiying human MHC supertypes using bioinformatic methods
    • Doytchinova IA, Guan P, Flower DR. Identifiying human MHC supertypes using bioinformatic methods. J Immunol 2004; 172: 4314-4323.
    • (2004) J Immunol , vol.172 , pp. 4314-4323
    • Doytchinova, I.A.1    Guan, P.2    Flower, D.R.3
  • 20
    • 84900320189 scopus 로고    scopus 로고
    • Clustering HLA class i superfamilies using structural interaction patterns
    • Harjanto S, Ng LFP, Tong JC. Clustering HLA class I superfamilies using structural interaction patterns. PLoS ONE 2014; 9: e86655.
    • (2014) PLoS ONE , vol.9 , pp. e86655
    • Harjanto, S.1    Lfp, N.2    Tong, J.C.3
  • 21
    • 84864422110 scopus 로고    scopus 로고
    • PocketAnnotate: Towards site-based function annotation
    • Anand P, Yeturu K, Chandra N. PocketAnnotate: towards site-based function annotation. Nucleic Acids Res 2012; 40: W400-W408.
    • (2012) Nucleic Acids Res , vol.40 , pp. W400-W408
    • Anand, P.1    Yeturu, K.2    Chandra, N.3
  • 23
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali A, Blundell TL. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 1993; 234: 779-815.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 26
    • 84936847746 scopus 로고    scopus 로고
    • FigTree-graphical viewer of phylogenetic trees
    • FigTree-graphical viewer of phylogenetic trees. http://tree.bio.ed.ac.uk/software/figtree/.
  • 27
    • 43349094507 scopus 로고    scopus 로고
    • The igraph software package for complex network research
    • Csardi G, Nepusz T. The igraph software package for complex network research. Inter Journal, Complex Systems 1695. 2006.
    • (2006) Inter Journal, Complex Systems , vol.1695
    • Csardi, G.1    Nepusz, T.2
  • 28
    • 33749500709 scopus 로고    scopus 로고
    • Computing communities in large networks using random walks
    • Pons P, Latapy M. Computing communities in large networks using random walks. JGAA 2004; 10: 284-293.
    • (2004) JGAA , vol.10 , pp. 284-293
    • Pons, P.1    Latapy, M.2
  • 29
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • Girvan M, Newman MEJ. Community structure in social and biological networks. Proc Natl Acad Sci USA 2002; 99: 7821-7826.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.J.2
  • 30
    • 42749100809 scopus 로고    scopus 로고
    • Fast algorithm for detecting community structure in networks
    • Newman MEJ. Fast algorithm for detecting community structure in networks. Phys Rev E 2004; 69: 066133-.
    • (2004) Phys Rev e , vol.69 , pp. 066133
    • Newman, M.E.J.1
  • 33
    • 77949448493 scopus 로고    scopus 로고
    • Predicting MHC class i epitopes in large datasets
    • Roomp K, Antes I, Lengauer T. Predicting MHC class I epitopes in large datasets. BMC Bioinformatics 2010; 11: 90.
    • (2010) BMC Bioinformatics , vol.11 , pp. 90
    • Roomp, K.1    Antes, I.2    Lengauer, T.3
  • 34
    • 0031178951 scopus 로고    scopus 로고
    • The mathematical theory of communication. 1963
    • Shannon CE. The mathematical theory of communication. 1963. MD Comput 1997; 14: 306-317.
    • (1997) MD Comput , vol.14 , pp. 306-317
    • Shannon, C.E.1
  • 36
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003; 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6
  • 37
    • 0024640140 scopus 로고
    • An algorithm for drawing general undirected graphs, Information Processing Letters
    • Kamada, Tomihisa, Kawai, Satoru. An algorithm for drawing general undirected graphs, Information Processing Letters. Elsevier 1981; 31: 7-15.
    • (1981) Elsevier , vol.31 , pp. 7-15
    • Kamada, T.1    Kawai, S.2


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