-
1
-
-
0003732734
-
Immunobiology: the immune system in health and disease
-
New York: Garland Publishing, 5
-
Janeway CA, Travers P, Walport M, Shlomchik MJ. Immunobiology: the immune system in health and disease. 2001, New York: Garland Publishing, 5.
-
(2001)
-
-
Janeway, C.A.1
Travers, P.2
Walport, M.3
Shlomchik, M.J.4
-
2
-
-
0004257938
-
Fundamental Immunology
-
New York: Raven Press, 4, (eds)
-
Paul W, . (eds) Fundamental Immunology. 1998, New York: Raven Press, 4, (eds).
-
(1998)
-
-
Paul, W.1
-
3
-
-
0026521557
-
HLA-A2.1-associated peptides from a mutant cell line: a second pathway of antigen presentation
-
10.1126/science.1546329, 1546329
-
Henderson RA, Michel H, Sakaguchi K, Shabanowitz J, Appella E, Hunt DF, Engelhard VH. HLA-A2.1-associated peptides from a mutant cell line: a second pathway of antigen presentation. Science 1992, 255(5049):1264-1266. 10.1126/science.1546329, 1546329.
-
(1992)
Science
, vol.255
, Issue.5049
, pp. 1264-1266
-
-
Henderson, R.A.1
Michel, H.2
Sakaguchi, K.3
Shabanowitz, J.4
Appella, E.5
Hunt, D.F.6
Engelhard, V.H.7
-
4
-
-
21344440326
-
The design and implementation of the immune epitope database and analysis resource
-
10.1007/s00251-005-0803-5, 15895191
-
Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, et al. The design and implementation of the immune epitope database and analysis resource. Immunogenetics 2005, 57(5):326-336. 10.1007/s00251-005-0803-5, 15895191.
-
(2005)
Immunogenetics
, vol.57
, Issue.5
, pp. 326-336
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
-
5
-
-
20944447214
-
The immune epitope database and analysis resource: from vision to blueprint
-
10.1371/journal.pbio.0030091, 1065705, 15760272
-
Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, et al. The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol 2005, 3(3):e91. 10.1371/journal.pbio.0030091, 1065705, 15760272.
-
(2005)
PLoS Biol
, vol.3
, Issue.3
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
-
6
-
-
0033388725
-
SYFPEITHI: database for MHC ligands and peptide motifs
-
10.1007/s002510050595, 10602881
-
Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 1999, 50(3-4):213-219. 10.1007/s002510050595, 10602881.
-
(1999)
Immunogenetics
, vol.50
, Issue.3-4
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
7
-
-
79960081308
-
HIV Molecular Immunology 2006/2007
-
Los Alamos, New Mexico: Los Alamos National Laboratory, Theoretical Biology and Biophysics
-
HIV Molecular Immunology 2006/2007. LA-UR 07-4752 2007, Los Alamos, New Mexico: Los Alamos National Laboratory, Theoretical Biology and Biophysics.
-
(2007)
LA-UR 07-4752
-
-
-
8
-
-
0036081083
-
FIMM, a database of functional molecular immunology: update 2002
-
10.1093/nar/30.1.226, 99079, 11752300
-
Schonbach C, Koh JL, Flower DR, Wong L, Brusic V. FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res 2002, 30(1):226-229. 10.1093/nar/30.1.226, 99079, 11752300.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 226-229
-
-
Schonbach, C.1
Koh, J.L.2
Flower, D.R.3
Wong, L.4
Brusic, V.5
-
9
-
-
0031811850
-
MHCPEP, a database of MHC-binding peptides: update 1997
-
10.1093/nar/26.1.368, 147255, 9399876
-
Brusic V, Rudy G, Harrison LC. MHCPEP, a database of MHC-binding peptides: update 1997. Nucleic Acids Res 1998, 26(1):368-371. 10.1093/nar/26.1.368, 147255, 9399876.
-
(1998)
Nucleic Acids Res
, vol.26
, Issue.1
, pp. 368-371
-
-
Brusic, V.1
Rudy, G.2
Harrison, L.C.3
-
10
-
-
75849149663
-
MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes
-
10.1186/1756-0500-2-61, 2679046, 19379493
-
Lata S, Bhasin M, Raghava GP. MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes. BMC Res Notes 2009, 2:61. 10.1186/1756-0500-2-61, 2679046, 19379493.
-
(2009)
BMC Res Notes
, vol.2
, pp. 61
-
-
Lata, S.1
Bhasin, M.2
Raghava, G.P.3
-
11
-
-
0036211926
-
JenPep: a database of quantitative functional peptide data for immunology
-
10.1093/bioinformatics/18.3.434, 11934742
-
Blythe MJ, Doytchinova IA, Flower DR. JenPep: a database of quantitative functional peptide data for immunology. Bioinformatics 2002, 18(3):434-439. 10.1093/bioinformatics/18.3.434, 11934742.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 434-439
-
-
Blythe, M.J.1
Doytchinova, I.A.2
Flower, D.R.3
-
12
-
-
28544438391
-
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data
-
10.1186/1745-7580-1-4, 1289288, 16305757
-
Toseland CP, Clayton DJ, McSparron H, Hemsley SL, Blythe MJ, Paine K, Doytchinova IA, Guan P, Hattotuwagama CK, Flower DR. AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res 2005, 1(1):4. 10.1186/1745-7580-1-4, 1289288, 16305757.
-
(2005)
Immunome Res
, vol.1
, Issue.1
, pp. 4
-
-
Toseland, C.P.1
Clayton, D.J.2
McSparron, H.3
Hemsley, S.L.4
Blythe, M.J.5
Paine, K.6
Doytchinova, I.A.7
Guan, P.8
Hattotuwagama, C.K.9
Flower, D.R.10
-
13
-
-
34250635170
-
Methods and protocols for prediction of immunogenic epitopes
-
10.1093/bib/bbl038, 17077136
-
Tong JC, Tan TW, Ranganathan S. Methods and protocols for prediction of immunogenic epitopes. Brief Bioinform 2007, 8(2):96-108. 10.1093/bib/bbl038, 17077136.
-
(2007)
Brief Bioinform
, vol.8
, Issue.2
, pp. 96-108
-
-
Tong, J.C.1
Tan, T.W.2
Ranganathan, S.3
-
14
-
-
33747892659
-
DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations
-
10.1093/bioinformatics/btl216, 16873467
-
Antes I, Siu SW, Lengauer T. DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. Bioinformatics 2006, 22(14):e16-24. 10.1093/bioinformatics/btl216, 16873467.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Antes, I.1
Siu, S.W.2
Lengauer, T.3
-
15
-
-
42549105195
-
Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research
-
10.1186/1471-2172-9-8, 2323361, 18366636
-
Lin HH, Ray S, Tongchusak S, Reinherz EL, Brusic V. Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunol 2008, 9:8. 10.1186/1471-2172-9-8, 2323361, 18366636.
-
(2008)
BMC Immunol
, vol.9
, pp. 8
-
-
Lin, H.H.1
Ray, S.2
Tongchusak, S.3
Reinherz, E.L.4
Brusic, V.5
-
16
-
-
33745584371
-
A community resource benchmarking predictions of peptide binding to MHC-I molecules
-
10.1371/journal.pcbi.0020065, 1475712,1475712, 16789818
-
Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, et al. A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput Biol 2006, 2(6):e65. 10.1371/journal.pcbi.0020065, 1475712,1475712, 16789818.
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.6
-
-
Peters, B.1
Bui, H.H.2
Frankild, S.3
Nielson, M.4
Lundegaard, C.5
Kostem, E.6
Basch, D.7
Lamberth, K.8
Harndahl, M.9
Fleri, W.10
-
17
-
-
58049217445
-
Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods
-
10.1093/bioinformatics/btn579, 2638932, 18996943
-
Zhang H, Lundegaard C, Nielsen M. Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods. Bioinformatics 2009, 25(1):83-89. 10.1093/bioinformatics/btn579, 2638932, 18996943.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 83-89
-
-
Zhang, H.1
Lundegaard, C.2
Nielsen, M.3
-
18
-
-
38849139819
-
Efficient peptide-MHC-I binding prediction for alleles with few known binders
-
10.1093/bioinformatics/btm611, 18083718
-
Jacob L, Vert JP. Efficient peptide-MHC-I binding prediction for alleles with few known binders. Bioinformatics 2008, 24(3):358-366. 10.1093/bioinformatics/btm611, 18083718.
-
(2008)
Bioinformatics
, vol.24
, Issue.3
, pp. 358-366
-
-
Jacob, L.1
Vert, J.P.2
-
19
-
-
33747879440
-
Learning MHC I--peptide binding
-
10.1093/bioinformatics/btl255, 16873476
-
Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O. Learning MHC I--peptide binding. Bioinformatics 2006, 22(14):e227-235. 10.1093/bioinformatics/btl255, 16873476.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Jojic, N.1
Reyes-Gomez, M.2
Heckerman, D.3
Kadie, C.4
Schueler-Furman, O.5
-
20
-
-
23144455463
-
MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides
-
10.1093/nar/gki452, 1160213, 15980449
-
Zhang GL, Khan AM, Srinivasan KN, August JT, Brusic V. MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Res 2005, (33 Web Server):W172-179. 10.1093/nar/gki452, 1160213, 15980449.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Zhang, G.L.1
Khan, A.M.2
Srinivasan, K.N.3
August, J.T.4
Brusic, V.5
-
21
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
10.1110/ps.03154503, 2323997, 12930999
-
Canutescu AA, Shelenkov AA, Dunbrack RL. A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci 2003, 12(9):2001-2014. 10.1110/ps.03154503, 2323997, 12930999.
-
(2003)
Protein Sci
, vol.12
, Issue.9
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack, R.L.3
-
22
-
-
79960093885
-
R Reference Manual: Base Package
-
Network Theory, Team RDC
-
Team RDC R Reference Manual: Base Package. 2003, 1. Network Theory, Team RDC.
-
(2003)
, vol.1
-
-
-
23
-
-
0142174642
-
Prediction of MHC class I binding peptides, using SVMHC
-
10.1186/1471-2105-3-25, 129981, 12225620
-
Dönnes P, Elofsson A. Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinformatics 2002, 3:25. 10.1186/1471-2105-3-25, 129981, 12225620.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 25
-
-
Dönnes, P.1
Elofsson, A.2
-
24
-
-
0002714543
-
Making large-scale support vector machine learning practical
-
Cambridge, MA: MIT Press, Scholkopf B, Burges C, Smola A
-
Joachims T. Making large-scale support vector machine learning practical. Advances in Kernel Methods: Support Vector Machines 1999, 169-184. Cambridge, MA: MIT Press, Scholkopf B, Burges C, Smola A.
-
(1999)
Advances in Kernel Methods: Support Vector Machines
, pp. 169-184
-
-
Joachims, T.1
-
25
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 1975, 405(2):442-451.
-
(1975)
Biochim Biophys Acta
, vol.405
, Issue.2
, pp. 442-451
-
-
Matthews, B.W.1
-
26
-
-
0036042580
-
Methods for prediction of peptide binding to MHC molecules: a comparative study
-
2039981, 12142545
-
Yu K, Petrovsky N, Schonbach C, Koh JY, Brusic V. Methods for prediction of peptide binding to MHC molecules: a comparative study. Mol Med 2002, 8(3):137-148. 2039981, 12142545.
-
(2002)
Mol Med
, vol.8
, Issue.3
, pp. 137-148
-
-
Yu, K.1
Petrovsky, N.2
Schonbach, C.3
Koh, J.Y.4
Brusic, V.5
-
27
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
10.1110/ps.0239403, 2323871, 12717023
-
Nielsen M, Lundegaard C, Worning P, Lauemoller SL, Lamberth K, Buus S, Brunak S, Lund O. Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci 2003, 12(5):1007-1017. 10.1110/ps.0239403, 2323871, 12717023.
-
(2003)
Protein Sci
, vol.12
, Issue.5
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemoller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
28
-
-
10744222046
-
Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
-
10.1034/j.1399-0039.2003.00112.x, 14617044
-
Buus S, Lauemoller SL, Worning P, Kesmir C, Frimurer T, Corbet S, Fomsgaard A, Hilden J, Holm A, Brunak S. Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. Tissue Antigens 2003, 62(5):378-384. 10.1034/j.1399-0039.2003.00112.x, 14617044.
-
(2003)
Tissue Antigens
, vol.62
, Issue.5
, pp. 378-384
-
-
Buus, S.1
Lauemoller, S.L.2
Worning, P.3
Kesmir, C.4
Frimurer, T.5
Corbet, S.6
Fomsgaard, A.7
Hilden, J.8
Holm, A.9
Brunak, S.10
-
29
-
-
0345438685
-
ROC graphs: notes and practical considerations for researchers
-
Fawcett T. ROC graphs: notes and practical considerations for researchers. Technical Report HPL-2003-4 2004,
-
(2004)
Technical Report HPL-2003-4
-
-
Fawcett, T.1
-
30
-
-
0023890867
-
Measuring the accuracy of diagnostic systems
-
10.1126/science.3287615, 3287615
-
Swets JA. Measuring the accuracy of diagnostic systems. Science 1988, 240(4857):1285-1293. 10.1126/science.3287615, 3287615.
-
(1988)
Science
, vol.240
, Issue.4857
, pp. 1285-1293
-
-
Swets, J.A.1
-
31
-
-
44649137451
-
Definition of MHC supertypes through clustering of MHC peptide-binding repertoires
-
full_text, 18449999
-
Reche PA, Reinherz EL. Definition of MHC supertypes through clustering of MHC peptide-binding repertoires. Methods Mol Biol 2007, 409:163-173. full_text, 18449999.
-
(2007)
Methods Mol Biol
, vol.409
, pp. 163-173
-
-
Reche, P.A.1
Reinherz, E.L.2
-
32
-
-
39649122106
-
HLA class I supertypes: a revised and updated classification
-
10.1186/1471-2172-9-1, 2245908, 18211710
-
Sidney J, Peters B, Frahm N, Brander C, Sette A. HLA class I supertypes: a revised and updated classification. BMC Immunol 2008, 9:1. 10.1186/1471-2172-9-1, 2245908, 18211710.
-
(2008)
BMC Immunol
, vol.9
, pp. 1
-
-
Sidney, J.1
Peters, B.2
Frahm, N.3
Brander, C.4
Sette, A.5
-
33
-
-
1642407844
-
Identifying human MHC supertypes using bioinformatic methods
-
Doytchinova IA, Guan P, Flower DR. Identifying human MHC supertypes using bioinformatic methods. J Immunol 2004, 172(7):4314-4323.
-
(2004)
J Immunol
, vol.172
, Issue.7
, pp. 4314-4323
-
-
Doytchinova, I.A.1
Guan, P.2
Flower, D.R.3
-
34
-
-
0037314043
-
Competition-based cellular peptide binding assays for 13 prevalent HLA class I alleles using fluorescein-labeled synthetic peptides
-
10.1016/S0198-8859(02)00787-5, 12559627
-
Kessler JH, Mommaas B, Mutis T, Huijbers I, Vissers D, Benckhuijsen WE, Schreuder GM, Offringa R, Goulmy E, Melief CJ, et al. Competition-based cellular peptide binding assays for 13 prevalent HLA class I alleles using fluorescein-labeled synthetic peptides. Hum Immunol 2003, 64(2):245-255. 10.1016/S0198-8859(02)00787-5, 12559627.
-
(2003)
Hum Immunol
, vol.64
, Issue.2
, pp. 245-255
-
-
Kessler, J.H.1
Mommaas, B.2
Mutis, T.3
Huijbers, I.4
Vissers, D.5
Benckhuijsen, W.E.6
Schreuder, G.M.7
Offringa, R.8
Goulmy, E.9
Melief, C.J.10
|