-
1
-
-
37149011235
-
Will current technologies enable dinosaur proteomics?
-
Smejkal, G. B., and Schweitzer, M. H. (2007) Will current technologies enable dinosaur proteomics? Expert Rev. Proteomics 4, 695-699.
-
(2007)
Expert Rev. Proteomics
, vol.4
, pp. 695-699
-
-
Smejkal, G.B.1
Schweitzer, M.H.2
-
2
-
-
0034010048
-
New strategies for characterizing ancient proteins using matrix-assisted laser desorption ionization mass spectrometry
-
Ostrom, P. H., Schall, M., Gandhi, H., Shen, T.-L., Hauschka, P. V., Strahler, J. R., and Gage, D. A. (2000) New strategies for characterizing ancient proteins using matrix-assisted laser desorption ionization mass spectrometry. Geochim. Cosmochim. Acta 64, 1043-1050.
-
(2000)
Geochim. Cosmochim. Acta
, vol.64
, pp. 1043-1050
-
-
Ostrom, P.H.1
Schall, M.2
Gandhi, H.3
Shen, T.-L.4
Hauschka, P.V.5
Strahler, J.R.6
Gage, D.A.7
-
4
-
-
84856209745
-
Ancient biomolecules in Quaternary palaeoecology
-
Hofreiter, M., Collins, M., and Stewart, J. R. (2012) Ancient biomolecules in Quaternary palaeoecology. Quat. Sci. Rev. 33, 1-13.
-
(2012)
Quat. Sci. Rev.
, vol.33
, pp. 1-13
-
-
Hofreiter, M.1
Collins, M.2
Stewart, J.R.3
-
5
-
-
0033613644
-
Preservation of key biomolecules in the fossil record: Current knowledge and future challenges
-
Bada, J. L., Wang, X. S., and Hamilton, H. (1999) Preservation of key biomolecules in the fossil record: current knowledge and future challenges. Philos. Trans. R. Soc. London B 354, 77-87.
-
(1999)
Philos. Trans. R. Soc. London B
, vol.354
, pp. 77-87
-
-
Bada, J.L.1
Wang, X.S.2
Hamilton, H.3
-
6
-
-
0036668901
-
The survival of organic matter in bone: A review
-
Collins, M. J., Nielsen-Marsh, C. M., Hiller, J., Smith, C. I., Roberts, J. P., Prigodich, R. V., Wess, T. J., Csapò, J., Millard, A. R., and Turner-Walker, G. (2002) The survival of organic matter in bone: A review. Archaeometry 44, 383-394.
-
(2002)
Archaeometry
, vol.44
, pp. 383-394
-
-
Collins, M.J.1
Nielsen-Marsh, C.M.2
Hiller, J.3
Smith, C.I.4
Roberts, J.P.5
Prigodich, R.V.6
Wess, T.J.7
Csapò, J.8
Millard, A.R.9
Turner-Walker, G.10
-
7
-
-
67249110285
-
New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
-
Schwarz, C., Debruyne, R., Kuch, M., McNally, E., Schwarcz, H., Aubrey, A. D., Bada, J., and Poinar, H. (2009) New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains. Nucleic Acids Res. 37, 3215-3229.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3215-3229
-
-
Schwarz, C.1
Debruyne, R.2
Kuch, M.3
McNally, E.4
Schwarcz, H.5
Aubrey, A.D.6
Bada, J.7
Poinar, H.8
-
8
-
-
70350776892
-
Archaeological collagen: Why worry about collagen diagenesis?
-
Dobberstein, R. C., Collins, M. J., Craig, O. E., Taylor, G., Penkman, K. E. H., and Ritz-Timme, S. (2009) Archaeological collagen: Why worry about collagen diagenesis? Archaeol. Anthropol. Sci. 1, 31-42.
-
(2009)
Archaeol. Anthropol. Sci.
, vol.1
, pp. 31-42
-
-
Dobberstein, R.C.1
Collins, M.J.2
Craig, O.E.3
Taylor, G.4
Penkman, K.E.H.5
Ritz-Timme, S.6
-
9
-
-
34548690311
-
Interpreting sequences from mastodon and T. Rex
-
Asara, J. M., Garavelli, J. S., Slatter, D. A., Schweitzer, M. H., Freimark, L. M., Phillips, M., and Cantley, L. C. (2007) Interpreting sequences from mastodon and T. rex. Science 317, 1324-1325.
-
(2007)
Science
, vol.317
, pp. 1324-1325
-
-
Asara, J.M.1
Garavelli, J.S.2
Slatter, D.A.3
Schweitzer, M.H.4
Freimark, L.M.5
Phillips, M.6
Cantley, L.C.7
-
10
-
-
34247375985
-
Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry
-
Asara, J. M., Schweitzer, M. H., Freimark, L. M., Phillips, M., and Cantley, L. C. (2007) Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry. Science 316, 280-285.
-
(2007)
Science
, vol.316
, pp. 280-285
-
-
Asara, J.M.1
Schweitzer, M.H.2
Freimark, L.M.3
Phillips, M.4
Cantley, L.C.5
-
11
-
-
17444408161
-
Preservation of bone collagen from the late Cretaceous period studied by immunological techniques and atomic force microscopy
-
Avci, R., Schweitzer, M. H., Boyd, R. D., Wittmeyer, J. L., Terán Arce, F., and Calvo, J. O. (2005) Preservation of bone collagen from the late Cretaceous period studied by immunological techniques and atomic force microscopy. Langmuir ACS J. Surf. Colloids 21, 3584-3590.
-
(2005)
Langmuir ACS J. Surf. Colloids
, vol.21
, pp. 3584-3590
-
-
Avci, R.1
Schweitzer, M.H.2
Boyd, R.D.3
Wittmeyer, J.L.4
Terán Arce, F.5
Calvo, J.O.6
-
12
-
-
22844435386
-
Molecular preservation in Late Cretaceous sauropod dinosaur eggshells
-
Schweitzer, M. H., Chiappe, L., Garrido, A. C., Lowenstein, J. M., and Pincus, S. H. (2005) Molecular preservation in Late Cretaceous sauropod dinosaur eggshells. Proc. Biol. Sci. 272, 775-784.
-
(2005)
Proc. Biol. Sci.
, vol.272
, pp. 775-784
-
-
Schweitzer, M.H.1
Chiappe, L.2
Garrido, A.C.3
Lowenstein, J.M.4
Pincus, S.H.5
-
13
-
-
15544371345
-
Soft-tissue vessels and cellular preservation in Tyrannosaurus rex
-
Schweitzer, M. H., Wittmeyer, J. L., Horner, J. R., and Toporski, J. K. (2005) Soft-tissue vessels and cellular preservation in Tyrannosaurus rex. Science 307, 1952-1955.
-
(2005)
Science
, vol.307
, pp. 1952-1955
-
-
Schweitzer, M.H.1
Wittmeyer, J.L.2
Horner, J.R.3
Toporski, J.K.4
-
14
-
-
20344366331
-
Genderspecific reproductive tissue in ratites and Tyrannosaurus rex
-
Schweitzer, M. H., Wittmeyer, J. L., and Horner, J. R. (2005) Genderspecific reproductive tissue in ratites and Tyrannosaurus rex. Science 308, 1456-1460.
-
(2005)
Science
, vol.308
, pp. 1456-1460
-
-
Schweitzer, M.H.1
Wittmeyer, J.L.2
Horner, J.R.3
-
15
-
-
78650423644
-
Blood from stone
-
Schweitzer, M. H. (2010) Blood from stone. Sci. Am. 303, 62-69.
-
(2010)
Sci. Am.
, vol.303
, pp. 62-69
-
-
Schweitzer, M.H.1
-
16
-
-
65549134251
-
Biomolecular characterization and protein sequences of the Campanian hadrosaur B. Canadensis
-
Schweitzer, M. H., Zheng, W., Organ, C. L., Avci, R., Suo, Z., Freimark, L. M., Lebleu, V. S., Duncan, M. B., Vander Heiden, M. G., Neveu, J. M., Lane, W. S., Cottrell, J. S., Horner, J. R., Cantley, L. C., Kalluri, R., and Asara, J. M. (2009) Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis. Science 324, 626-631.
-
(2009)
Science
, vol.324
, pp. 626-631
-
-
Schweitzer, M.H.1
Zheng, W.2
Organ, C.L.3
Avci, R.4
Suo, Z.5
Freimark, L.M.6
Lebleu, V.S.7
Duncan, M.B.8
Vander Heiden, M.G.9
Neveu, J.M.10
Lane, W.S.11
Cottrell, J.S.12
Horner, J.R.13
Cantley, L.C.14
Kalluri, R.15
Asara, J.M.16
-
17
-
-
34247323509
-
Analyses of soft tissue from Tyrannosaurus rex suggest the presence of protein
-
Schweitzer, M. H., Suo, Z., Avci, R., Asara, J. M., Allen, M. A., Arce, F. T., and Horner, J. R. (2007) Analyses of soft tissue from Tyrannosaurus rex suggest the presence of protein. Science 316, 277-280.
-
(2007)
Science
, vol.316
, pp. 277-280
-
-
Schweitzer, M.H.1
Suo, Z.2
Avci, R.3
Asara, J.M.4
Allen, M.A.5
Arce, F.T.6
Horner, J.R.7
-
18
-
-
84869209179
-
Molecular analyses of dinosaur osteocytes support the presence of endogenous molecules
-
Schweitzer, M. H., Zheng, W., Cleland, T. P., and Bern, M. (2013) Molecular analyses of dinosaur osteocytes support the presence of endogenous molecules. Bone 52, 414-423.
-
(2013)
Bone
, vol.52
, pp. 414-423
-
-
Schweitzer, M.H.1
Zheng, W.2
Cleland, T.P.3
Bern, M.4
-
19
-
-
50649097446
-
Fresh doubts over T. Rex chicken link
-
Dalton, R. (2008) Fresh doubts over T. rex chicken link. Nat. News 454, 1035-1035.
-
(2008)
Nat. News
, vol.454
, pp. 1035-1035
-
-
Dalton, R.1
-
20
-
-
50149116038
-
Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"
-
Pevzner, P. A., Kim, S., and Ng, J. (2008) Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry." Science 321, 1040-1040.
-
(2008)
Science
, vol.321
, pp. 1040-1040
-
-
Pevzner, P.A.1
Kim, S.2
Ng, J.3
-
21
-
-
37849018459
-
Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"
-
author reply 33
-
Buckley, M., Walker, A., Ho, S. Y. W., Yang, Y., Smith, C., Ashton, P., Oates, J. T., Cappellini, E., Koon, H., Penkman, K., Elsworth, B., Ashford, D., Solazzo, C., Andrews, P., Strahler, J., Shapiro, B., Ostrom, P., Gandhi, H., Miller, W., Raney, B., Zylber, M. I., Gilbert, M. T. P., Prigodich, R. V., Ryan, M., Rijsdijk, K. F., Janoo, A., and Collins, M. J. (2008) Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry." Science 319, 33; author reply 33.
-
(2008)
Science
, vol.319
, pp. 33
-
-
Buckley, M.1
Walker, A.2
Ho, S.Y.W.3
Yang, Y.4
Smith, C.5
Ashton, P.6
Oates, J.T.7
Cappellini, E.8
Koon, H.9
Penkman, K.10
Elsworth, B.11
Ashford, D.12
Solazzo, C.13
Andrews, P.14
Strahler, J.15
Shapiro, B.16
Ostrom, P.17
Gandhi, H.18
Miller, W.19
Raney, B.20
Zylber, M.I.21
Gilbert, M.T.P.22
Prigodich, R.V.23
Ryan, M.24
Rijsdijk, K.F.25
Janoo, A.26
Collins, M.J.27
more..
-
22
-
-
70349925705
-
Reanalysis of Tyrannosaurus rex mass spectra
-
Bern, M., Phinney, B. S., and Goldberg, D. (2009) Reanalysis of Tyrannosaurus rex mass spectra. J. Proteome Res. 8, 4328-4332.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4328-4332
-
-
Bern, M.1
Phinney, B.S.2
Goldberg, D.3
-
23
-
-
84874987797
-
Slow rates of degradation of osteocalcin: Green light for fossil bone protein?
-
Collins, M. J., Gernaey, A. M., Nielsen-Marsh, C. M., Vermeer, C., and Westbroek, P. (2000) Slow rates of degradation of osteocalcin: Green light for fossil bone protein? Geology 28, 1139-1142.
-
(2000)
Geology
, vol.28
, pp. 1139-1142
-
-
Collins, M.J.1
Gernaey, A.M.2
Nielsen-Marsh, C.M.3
Vermeer, C.4
Westbroek, P.5
-
24
-
-
34249856093
-
800, 000 year old mammoth DNA, modern elephant DNA or PCR artifact?
-
discussion 60-63
-
Binladen, J., Gilbert, M. T., and Willerslev, E. (2007) 800, 000 year old mammoth DNA, modern elephant DNA or PCR artifact? Biol. Lett. 3, 55-56; discussion 60-63.
-
(2007)
Biol. Lett.
, vol.3
, pp. 55-56
-
-
Binladen, J.1
Gilbert, M.T.2
Willerslev, E.3
-
25
-
-
84875443817
-
A molecular phylogeny of Plesiorycteropus reassigns the extinct mammalian order "Bibymalagasia"
-
Buckley, M. (2013) A molecular phylogeny of Plesiorycteropus reassigns the extinct mammalian order "Bibymalagasia." PloS One 8, e59614.
-
(2013)
PloS One
, vol.8
, pp. e59614
-
-
Buckley, M.1
-
26
-
-
0028088277
-
DNA from ancient mammoth bones
-
Hagelberg, E., Thomas, M. G., Cook, C. E. Jr., Sher, A. V., Baryshnikov, G. F., and Lister, A. M. (1994) DNA from ancient mammoth bones. Nature 370, 333-334.
-
(1994)
Nature
, vol.370
, pp. 333-334
-
-
Hagelberg, E.1
Thomas, M.G.2
Cook, C.E.3
Sher, A.V.4
Baryshnikov, G.F.5
Lister, A.M.6
-
27
-
-
0029652433
-
Detecting dinosaur DNA
-
author reply 1194
-
Hedges, S. B., and Schweitzer, M. H. (1995) Detecting dinosaur DNA. Science 268, 1191-1192; author reply 1194.
-
(1995)
Science
, vol.268
, pp. 1191-1192
-
-
Hedges, S.B.1
Schweitzer, M.H.2
-
28
-
-
78650472000
-
Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants
-
Rohland, N., Reich, D., Mallick, S., Meyer, M., Green, R. E., Georgiadis, N. J., Roca, A. L., and Hofreiter, M. (2010) Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants. PLoS Biol 8, e1000564.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000564
-
-
Rohland, N.1
Reich, D.2
Mallick, S.3
Meyer, M.4
Green, R.E.5
Georgiadis, N.J.6
Roca, A.L.7
Hofreiter, M.8
-
29
-
-
84856667924
-
Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins
-
Cappellini, E., Jensen, L. J., Szklarczyk, D., Ginolhac, A., da Fonseca, R. A., Stafford, T. W., Holen, S. R., Collins, M. J., Orlando, L., Willerslev, E., Gilbert, M. T., and Olsen, J. V. (2012) Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins. J. Proteome Res. 11, 917-926.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 917-926
-
-
Cappellini, E.1
Jensen, L.J.2
Szklarczyk, D.3
Ginolhac, A.4
Da Fonseca, R.A.5
Stafford, T.W.6
Holen, S.R.7
Collins, M.J.8
Orlando, L.9
Willerslev, E.10
Gilbert, M.T.11
Olsen, J.V.12
-
30
-
-
84893826865
-
Proteome degradation in fossils: Investigating the longevity of protein survival in ancient bone
-
Wadsworth, C., and Buckley, M. (2014) Proteome degradation in fossils: Investigating the longevity of protein survival in ancient bone. Rapid Commun. Mass Spectrom. RCM 28, 605-615.
-
(2014)
Rapid Commun. Mass Spectrom. RCM
, vol.28
, pp. 605-615
-
-
Wadsworth, C.1
Buckley, M.2
-
31
-
-
39149092338
-
A method of isolating the collagen (I) α2 chain carboxytelopeptide for species identification in bone fragments
-
Buckley, M., Collins, M., and Thomas-Oates, J. (2008) A method of isolating the collagen (I) α2 chain carboxytelopeptide for species identification in bone fragments. Anal. Biochem. 374, 325-334.
-
(2008)
Anal. Biochem.
, vol.374
, pp. 325-334
-
-
Buckley, M.1
Collins, M.2
Thomas-Oates, J.3
-
32
-
-
71949102106
-
Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry
-
Buckley, M., Collins, M., Thomas-Oates, J., and Wilson, J. C. (2009) Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. RCM 23, 3843-3854.
-
(2009)
Rapid Commun. Mass Spectrom. RCM
, vol.23
, pp. 3843-3854
-
-
Buckley, M.1
Collins, M.2
Thomas-Oates, J.3
Wilson, J.C.4
-
33
-
-
84856225583
-
Collagen survival and its use for species identification in Holocene-lower Pleistocene bone fragments from British archaeological and paleontological sites
-
Buckley, M., and Collins, M. J. (2011) Collagen survival and its use for species identification in Holocene-lower Pleistocene bone fragments from British archaeological and paleontological sites. Antiqua 1, 1.
-
(2011)
Antiqua
, vol.1
, pp. 1
-
-
Buckley, M.1
Collins, M.J.2
-
34
-
-
0003413913
-
The organic constituents of mammalian compact bone
-
Eastoe, J. E., and Eastoe, B. (1954) The organic constituents of mammalian compact bone. Biochem. J. 57, 453-459.
-
(1954)
Biochem. J
, vol.57
, pp. 453-459
-
-
Eastoe, J.E.1
Eastoe, B.2
-
35
-
-
4243125920
-
Collagen and a cellulose-like substance in fossil dentine and bone
-
Isaacs, W. A., Little, K., Currey, J. D., and Tarlo, L. B. H. (1963) Collagen and a cellulose-like substance in fossil dentine and bone. Nature 197, 192.
-
(1963)
Nature
, vol.197
, pp. 192
-
-
Isaacs, W.A.1
Little, K.2
Currey, J.D.3
Tarlo, L.B.H.4
-
36
-
-
78651121865
-
Collagen in fossil bone
-
Wyckoff, R. W., Wagner, E., Matter, P. 3rd, and Doberenz, A. R. (1963) Collagen in fossil bone. Proc. Natl. Acad. Sci. U.S.A. 50, 215-218.
-
(1963)
Proc. Natl. Acad. Sci. U.S.A.
, vol.50
, pp. 215-218
-
-
Wyckoff, R.W.1
Wagner, E.2
Matter, P.3
Doberenz, A.R.4
-
37
-
-
39549098022
-
The amino acid composition of proteins from Pleistocene bones
-
Wyckoff, R. W., McCaughey, W. F., and Doberenz, A. R. (1964) the amino acid composition of proteins from Pleistocene bones. Biochim. Biophys. Acta 93, 374-377.
-
(1964)
Biochim. Biophys. Acta
, vol.93
, pp. 374-377
-
-
Wyckoff, R.W.1
McCaughey, W.F.2
Doberenz, A.R.3
-
38
-
-
0013786259
-
The amino acid composition of bone and tooth proteins in late Pleistocene mammals
-
Ho, T. Y. (1965) The amino acid composition of bone and tooth proteins in late Pleistocene mammals. Proc. Natl. Acad. Sci. U.S.A. 54, 26-31.
-
(1965)
Proc. Natl. Acad. Sci. U.S.A.
, vol.54
, pp. 26-31
-
-
Ho, T.Y.1
-
39
-
-
0011265211
-
Collagen preservation in soft tissue from the Magadan mammoth
-
Goodman, M., Birk, D. E., Romero-Herrera, A. E., Lande, M. A., Dene, H., and Barnhart, M. I. (1980) Collagen preservation in soft tissue from the Magadan mammoth. FEBS Lett. 114, 30-34.
-
(1980)
FEBS Lett
, vol.114
, pp. 30-34
-
-
Goodman, M.1
Birk, D.E.2
Romero-Herrera, A.E.3
Lande, M.A.4
Dene, H.5
Barnhart, M.I.6
-
40
-
-
0035569923
-
Radiocarbon dating of total soil organic matter and humin fraction and its comparison with (super 14) C ages of fossil charcoal
-
Pessenda, L. R., Gouveia, S. M., and Aravena, R. (2006) Radiocarbon dating of total soil organic matter and humin fraction and its comparison with (super 14) C ages of fossil charcoal. Radiocarbon 43, 595-601.
-
(2006)
Radiocarbon
, vol.43
, pp. 595-601
-
-
Pessenda, L.R.1
Gouveia, S.M.2
Aravena, R.3
-
41
-
-
77955090647
-
Evolution of the mutation rate
-
Lynch, M. (2010) Evolution of the mutation rate. Trends Genet. 26, 345-352.
-
(2010)
Trends Genet
, vol.26
, pp. 345-352
-
-
Lynch, M.1
-
42
-
-
33646182934
-
An integrated view of protein evolution
-
Pál, C., Papp, B., and Lercher, M. J. (2006) An integrated view of protein evolution. Nat. Rev. Genet. 7, 337-348.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 337-348
-
-
Pál, C.1
Papp, B.2
Lercher, M.J.3
-
43
-
-
0019309477
-
Mammoth albumin
-
Prager, E. M., Wilson, A. C., Lowenstein, J. M., and Sarich, V. M. (1980) Mammoth albumin. Science 209, 287-289.
-
(1980)
Science
, vol.209
, pp. 287-289
-
-
Prager, E.M.1
Wilson, A.C.2
Lowenstein, J.M.3
Sarich, V.M.4
-
44
-
-
0023571792
-
Extraction of osteocalcin from fossil bones and teeth
-
Ulrich, M. M., Perizonius, W. R., Spoor, C. F., Sandberg, P., and Vermeer, C. (1987) Extraction of osteocalcin from fossil bones and teeth. Biochem. Biophys. Res. Commun. 149, 712-719.
-
(1987)
Biochem. Biophys. Res. Commun.
, vol.149
, pp. 712-719
-
-
Ulrich, M.M.1
Perizonius, W.R.2
Spoor, C.F.3
Sandberg, P.4
Vermeer, C.5
-
45
-
-
0346158554
-
Bone protects proteins over thousands of years: Extraction, analysis, and interpretation of extracellular matrix proteins in archeological skeletal remains
-
Schmidt-Schultz, T. H., and Schultz, M. (2004) Bone protects proteins over thousands of years: Extraction, analysis, and interpretation of extracellular matrix proteins in archeological skeletal remains. Am. J. Phys. Anthropol. 123, 30-39.
-
(2004)
Am. J. Phys. Anthropol.
, vol.123
, pp. 30-39
-
-
Schmidt-Schultz, T.H.1
Schultz, M.2
-
46
-
-
0025016151
-
Blood in ancient human bone
-
Cattaneo, C., Gelsthorpe, K., Phillips, P., and Sokol, R. J. (1990) Blood in ancient human bone. Nature 347, 339.
-
(1990)
Nature
, vol.347
, pp. 339
-
-
Cattaneo, C.1
Gelsthorpe, K.2
Phillips, P.3
Sokol, R.J.4
-
47
-
-
0347925081
-
Sequence preservation of osteocalcin protein and mitochondrial DNA in bison bones older than 55 ka
-
Nielsen-Marsh, C. M., Ostrom, P. H., Gandhi, H., Shapiro, B., Cooper, A., Hauschka, P. V., and Collins, M. J. (2002) Sequence preservation of osteocalcin protein and mitochondrial DNA in bison bones older than 55 ka. Geology 30, 1099-1102.
-
(2002)
Geology
, vol.30
, pp. 1099-1102
-
-
Nielsen-Marsh, C.M.1
Ostrom, P.H.2
Gandhi, H.3
Shapiro, B.4
Cooper, A.5
Hauschka, P.V.6
Collins, M.J.7
-
48
-
-
15444370459
-
Osteocalcin protein sequences of Neanderthals and modern primates
-
Nielsen-Marsh, C. M., Richards, M. P., Hauschka, P. V., Thomas-Oates, J. E., Trinkaus, E., Pettitt, P. B., Karavanić, I., Poinar, H., and Collins, M. J. (2005) Osteocalcin protein sequences of Neanderthals and modern primates. Proc. Natl. Acad. Sci. U.S.A. 102, 4409-4413.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 4409-4413
-
-
Nielsen-Marsh, C.M.1
Richards, M.P.2
Hauschka, P.V.3
Thomas-Oates, J.E.4
Trinkaus, E.5
Pettitt, P.B.6
Karavanić, I.7
Poinar, H.8
Collins, M.J.9
-
49
-
-
84947648671
-
Geologic setting and stratigraphy of the Ziegler Reservoir fossil site, Snowmass Village, Colorado
-
Pigati, J. S., Miller, I. M., Johnson, K. R., Honke, J. S., Carrara, P. E., Muhs, D. R., Skipp, G., and Bryant, B. (2014) Geologic setting and stratigraphy of the Ziegler Reservoir fossil site, Snowmass Village, Colorado. Quat. Res. 82, 3, 477-489.
-
(2014)
Quat. Res.
, vol.82
, Issue.3
, pp. 477-489
-
-
Pigati, J.S.1
Miller, I.M.2
Johnson, K.R.3
Honke, J.S.4
Carrara, P.E.5
Muhs, D.R.6
Skipp, G.7
Bryant, B.8
-
50
-
-
84926223265
-
The snowmastodon project
-
Johnson, K. R., Miller, I. M., and Pigati, J. S. (2014) The Snowmastodon Project. Quat. Res. 82, 3, 473-476.
-
(2014)
Quat. Res.
, vol.82
, Issue.3
, pp. 473-476
-
-
Johnson, K.R.1
Miller, I.M.2
Pigati, J.S.3
-
51
-
-
84926180430
-
High-elevation late Pleistocene (MIS 6-5) vertebrate faunas from the Ziegler Reservoir fossil site, Snowmass Village, Colorado
-
Sertich, J. J. W., Stucky, R. K., McDonald, H. G., Newton, C., Fisher, D. C., Scott, E., Demboski, J. R., Lucking, C., McHorse, B. K., and Davis, E. B. (2014) High-elevation late Pleistocene (MIS 6-5) vertebrate faunas from the Ziegler Reservoir fossil site, Snowmass Village, Colorado. Quat. Res. 82, 3, 504-517.
-
(2014)
Quat. Res.
, vol.82
, Issue.3
, pp. 504-517
-
-
Sertich, J.J.W.1
Stucky, R.K.2
McDonald, H.G.3
Newton, C.4
Fisher, D.C.5
Scott, E.6
Demboski, J.R.7
Lucking, C.8
McHorse, B.K.9
Davis, E.B.10
-
52
-
-
84926247352
-
Environmental interpretation of fossil insect assemblages from MIS 5 at Ziegler Reservoir, Snowmass Village, Colorado
-
Elias, S. A. (2014) Environmental interpretation of fossil insect assemblages from MIS 5 at Ziegler Reservoir, Snowmass Village, Colorado. Quat. Res. 82, 3, 592-603.
-
(2014)
Quat. Res.
, vol.82
, Issue.3
, pp. 592-603
-
-
Elias, S.A.1
-
53
-
-
84947648911
-
A high-elevation, multi-proxy biotic and environmental record of MIS 6-4 from the Ziegler Reservoir fossil site, Snowmass Village, Colorado
-
Miller, I. M., Pigati, J. S., Scott Anderson, R., Johnson, K. R., Mahan, S. A., Ager, T. A., Baker, R. G., Blaauw, M., Bright, J., Brown, P. M., Bryant, B., Calamari, Z. T., Carrara, P. E., Cherney, M. D., Demboski, J. R., Elias, S. A., Fisher, D. C., Gray, H. J., Haskett, D. R., Honke, J. S., Jackson, S. T., Jiménez-Moreno, G., Kline, D., Leonard, E. M., Lifton, N. A., Lucking, C., Gregory McDonald, H., Miller, D. M., Muhs, D. R., Nash, S. E., Newton, C., Paces, J. B., Petrie, L., Plummer, M. A., Porinchu, D. F., Rountrey, A. N., Scott, E., Sertich, J. J. W., Sharpe, S. E., Skipp, G. L., Strickland, L. E., Stucky, R. K., Thompson, R. S., and Wilson, J. (2014) A high-elevation, multi-proxy biotic and environmental record of MIS 6-4 from the Ziegler Reservoir fossil site, Snowmass Village, Colorado, U.S.A. Quat. Res. 82, 3, 618-634.
-
(2014)
U.S.A. Quat. Res.
, vol.82
, Issue.3
, pp. 618-634
-
-
Miller, I.M.1
Pigati, J.S.2
Scott Anderson, R.3
Johnson, K.R.4
Mahan, S.A.5
Ager, T.A.6
Baker, R.G.7
Blaauw, M.8
Bright, J.9
Brown, P.M.10
Bryant, B.11
Calamari, Z.T.12
Carrara, P.E.13
Cherney, M.D.14
Demboski, J.R.15
Elias, S.A.16
Fisher, D.C.17
Gray, H.J.18
Haskett, D.R.19
Honke, J.S.20
Jackson, S.T.21
Jiménez-Moreno, G.22
Kline, D.23
Leonard, E.M.24
Lifton, N.A.25
Lucking, C.26
Gregory McDonald, H.27
Miller, D.M.28
Muhs, D.R.29
Nash, S.E.30
Newton, C.31
Paces, J.B.32
Petrie, L.33
Plummer, M.A.34
Porinchu, D.F.35
Rountrey, A.N.36
Scott, E.37
Sertich, J.J.W.38
Sharpe, S.E.39
Skipp, G.L.40
Strickland, L.E.41
Stucky, R.K.42
Thompson, R.S.43
Wilson, J.44
more..
-
54
-
-
84926253310
-
A geochronologic framework for the Ziegler Reservoir fossil site, Snowmass Village, Colorado
-
Mahan, S. A., Gray, H. J., Pigati, J. S., Wilson, J., Lifton, N. A., Paces, J. B., and Blaauw, M. (2014) A geochronologic framework for the Ziegler Reservoir fossil site, Snowmass Village, Colorado. Quat. Res. 82, 3, 490-503.
-
(2014)
Quat. Res.
, vol.82
, Issue.3
, pp. 490-503
-
-
Mahan, S.A.1
Gray, H.J.2
Pigati, J.S.3
Wilson, J.4
Lifton, N.A.5
Paces, J.B.6
Blaauw, M.7
-
55
-
-
84875521318
-
Byonic: Advanced peptide and protein identification software
-
editoral board, Andreas D Baxevanis. [et al], Chapter 13, Unit13.20
-
Bern, M., Kil, Y. J., and Becker, C. (2012) Byonic: Advanced peptide and protein identification software. Curr. Protoc. Bioinforma./editoral board, Andreas D Baxevanis. [et al], Chapter 13, Unit13.20.
-
(2012)
Curr. Protoc. Bioinforma.
-
-
Bern, M.1
Kil, Y.J.2
Becker, C.3
-
56
-
-
79960181605
-
Modification site localization scoring integrated into a search engine
-
M111.008078
-
Baker, P. R., Trinidad, J. C., and Chalkley, R. J. (2011) Modification site localization scoring integrated into a search engine. Mol. Cell. Proteomics 10, M111.008078.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Baker, P.R.1
Trinidad, J.C.2
Chalkley, R.J.3
-
57
-
-
84899735221
-
MS-viewer: A web-based spectral viewer for proteomics results
-
Baker, P. R., and Chalkley, R. J. (2014) MS-viewer: A web-based spectral viewer for proteomics results. Mol. Cell. Proteomics 13, 1392-1396.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1392-1396
-
-
Baker, P.R.1
Chalkley, R.J.2
-
58
-
-
84866096044
-
Site-specific deamidation of glutamine: A new marker of bone collagen deterioration
-
Van Doorn, N. L., Wilson, J., Hollund, H., Soressi, M., and Collins, M. J. (2012) Site-specific deamidation of glutamine: A new marker of bone collagen deterioration. Rapid Commun. Mass Spectrom. 26, 2319-2327.
-
(2012)
Rapid Commun. Mass Spectrom.
, vol.26
, pp. 2319-2327
-
-
Van Doorn, N.L.1
Wilson, J.2
Hollund, H.3
Soressi, M.4
Collins, M.J.5
-
59
-
-
34948889296
-
Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses
-
Dasari, S., Wilmarth, P. A., Rustvold, D. L., Riviere, M. A., Nagalla, S. R., and David, L. L. (2007) Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses. J. Proteome Res. 6, 3819-3826.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 3819-3826
-
-
Dasari, S.1
Wilmarth, P.A.2
Rustvold, D.L.3
Riviere, M.A.4
Nagalla, S.R.5
David, L.L.6
-
60
-
-
84905994030
-
Glycosylation and cross-linking in bone type I collagen
-
Terajima, M., Perdivara, I., Sricholpech, M., Deguchi, Y., Pleshko, N., Tomer, K. B., and Yamauchi, M. (2014) Glycosylation and cross-linking in bone type I collagen. J. Biol. Chem. 289, 22636-22647.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 22636-22647
-
-
Terajima, M.1
Perdivara, I.2
Sricholpech, M.3
Deguchi, Y.4
Pleshko, N.5
Tomer, K.B.6
Yamauchi, M.7
-
61
-
-
84881124805
-
LC-MS/MS identification of the O-glycosylation and hydroxylation of amino acid residues of collagen α-1 (II) chain from bovine cartilage
-
Song, E., and Mechref, Y. (2013) LC-MS/MS identification of the O-glycosylation and hydroxylation of amino acid residues of collagen α-1 (II) chain from bovine cartilage. J. Proteome Res. 12, 3599-3609.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 3599-3609
-
-
Song, E.1
Mechref, Y.2
-
62
-
-
84863328693
-
Lysyl hydroxylase 3-mediated glucosylation in type I collagen: Molecular loci and biological significance
-
Sricholpech, M., Perdivara, I., Yokoyama, M., Nagaoka, H., Terajima, M., Tomer, K. B., and Yamauchi, M. (2012) Lysyl hydroxylase 3-mediated glucosylation in type I collagen: Molecular loci and biological significance. J. Biol. Chem. 287, 22998-23009.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 22998-23009
-
-
Sricholpech, M.1
Perdivara, I.2
Yokoyama, M.3
Nagaoka, H.4
Terajima, M.5
Tomer, K.B.6
Yamauchi, M.7
-
63
-
-
0014217149
-
The structure of the disaccharide unit of the renal glomerular basement membrane
-
Spiro, R. G. (1967) The structure of the disaccharide unit of the renal glomerular basement membrane. J. Biol. Chem. 242, 4813-4823.
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 4813-4823
-
-
Spiro, R.G.1
-
64
-
-
85013863499
-
-
Pierce, R. D. C. M. Academic Press, San Diego
-
Wells, L. (2010) Handbook of Glycomics, Pierce, R. D. C. M. Academic Press, San Diego, 45-57.
-
(2010)
Handbook of Glycomics
, pp. 45-57
-
-
Wells, L.1
-
65
-
-
0027155628
-
Isolation and complete amino acid sequence of osteocalcin from canine bone
-
Colombo, G., Fanti, P., Yao, C., and Malluche, H. H. (1993) Isolation and complete amino acid sequence of osteocalcin from canine bone. J. Bone Miner. Res. Off. J. Am. Soc. Bone Miner. Res. 8, 733-743.
-
(1993)
J. Bone Miner. Res. Off. J. Am. Soc. Bone Miner. Res.
, vol.8
, pp. 733-743
-
-
Colombo, G.1
Fanti, P.2
Yao, C.3
Malluche, H.H.4
-
66
-
-
80053205352
-
Infrared mapping resolves soft tissue preservation in 50 million year-old reptile skin
-
Edwards, N. P., Barden, H. E., van Dongen, B. E., Manning, P. L., Larson, P. L., Bergmann, U., Sellers, W. I., and Wogelius, R. A. (2011) Infrared mapping resolves soft tissue preservation in 50 million year-old reptile skin. Proc. R. Soc. B 278, 3209-3218.
-
(2011)
Proc. R. Soc. B
, vol.278
, pp. 3209-3218
-
-
Edwards, N.P.1
Barden, H.E.2
Van Dongen, B.E.3
Manning, P.L.4
Larson, P.L.5
Bergmann, U.6
Sellers, W.I.7
Wogelius, R.A.8
-
67
-
-
84936823029
-
-
Deleted in proof
-
Deleted in proof.
-
-
-
-
68
-
-
84874983451
-
Preservation of the bone protein osteocalcin in dinosaurs
-
Muyzer, G., Sandberg, P., Knapen, M. H. J., Vermeer, C., Collins, M., and Westbroek, P. (1992) Preservation of the bone protein osteocalcin in dinosaurs. Geology 20, 871.
-
(1992)
Geology
, vol.20
, pp. 871
-
-
Muyzer, G.1
Sandberg, P.2
Knapen, M.H.J.3
Vermeer, C.4
Collins, M.5
Westbroek, P.6
-
69
-
-
23644433820
-
Gelatin binding to the 8F19F1 module pair of human fibronectin requires site-specific Nglycosylation
-
Millard, C. J., Campbell, I. D., and Pickford, A. R. (2005) Gelatin binding to the 8F19F1 module pair of human fibronectin requires site-specific Nglycosylation. FEBS Lett. 579, 4529-4534.
-
(2005)
FEBS Lett
, vol.579
, pp. 4529-4534
-
-
Millard, C.J.1
Campbell, I.D.2
Pickford, A.R.3
-
70
-
-
0036007873
-
Insights on the conformational stability of collagen
-
Jenkins, C. L., and Raines, R. T. (2002) Insights on the conformational stability of collagen. Nat. Prod. Rep. 19, 49-59.
-
(2002)
Nat. Prod. Rep.
, vol.19
, pp. 49-59
-
-
Jenkins, C.L.1
Raines, R.T.2
-
71
-
-
84862306094
-
Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry
-
M111.010397
-
Taga, Y., Kusubata, M., Ogawa-Goto, K., and Hattori, S. (2012) Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry. Mol. Cell. Proteomics 11, M111.010397.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Taga, Y.1
Kusubata, M.2
Ogawa-Goto, K.3
Hattori, S.4
-
72
-
-
6344270259
-
Proteomic analysis of articular cartilage shows increased type II collagen synthesis in osteoarthritis and expression of inhibin βA (activin A), a regulatory molecule for chondrocytes
-
Hermansson, M., Sawaji, Y., Bolton, M., Alexander, S., Wallace, A., Begum, S., Wait, R., and Saklatvala, J. (2004) Proteomic analysis of articular cartilage shows increased type II collagen synthesis in osteoarthritis and expression of inhibin βA (activin A), a regulatory molecule for chondrocytes. J. Biol. Chem. 279, 43514-43521.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 43514-43521
-
-
Hermansson, M.1
Sawaji, Y.2
Bolton, M.3
Alexander, S.4
Wallace, A.5
Begum, S.6
Wait, R.7
Saklatvala, J.8
-
73
-
-
84863335041
-
Lysine post-translational modifications of collagen
-
Yamauchi, M., and Sricholpech, M. (2012) Lysine post-translational modifications of collagen. Essays Biochem. 52, 113-133.
-
(2012)
Essays Biochem
, vol.52
, pp. 113-133
-
-
Yamauchi, M.1
Sricholpech, M.2
-
74
-
-
0036861267
-
The third activity for lysyl hydroxylase 3: Galactosylation of hydroxylysyl residues in collagens in vitro
-
Wang, C., Luosujärvi, H., Heikkinen, J., Risteli, M., Uitto, L., and Myllylä, R. (2002) The third activity for lysyl hydroxylase 3: Galactosylation of hydroxylysyl residues in collagens in vitro. Matrix Biol. 21, 559-566.
-
(2002)
Matrix Biol.
, vol.21
, pp. 559-566
-
-
Wang, C.1
Luosujärvi, H.2
Heikkinen, J.3
Risteli, M.4
Uitto, L.5
Myllylä, R.6
-
75
-
-
33645049315
-
Glycosylation catalyzed by lysyl hydroxylase 3 is essential for basement membranes
-
Ruotsalainen, H., Sipilä, L., Vapola, M., Sormunen, R., Salo, A. M., Uitto, L., Mercer, D. K., Robins, S. P., Risteli, M., Aszodi, A., Fässler, R., and Myllylä, R. (2006) Glycosylation catalyzed by lysyl hydroxylase 3 is essential for basement membranes. J. Cell Sci. 119, 625-635.
-
(2006)
J. Cell Sci.
, vol.119
, pp. 625-635
-
-
Ruotsalainen, H.1
Sipilä, L.2
Vapola, M.3
Sormunen, R.4
Salo, A.M.5
Uitto, L.6
Mercer, D.K.7
Robins, S.P.8
Risteli, M.9
Aszodi, A.10
Fässler, R.11
Myllylä, R.12
-
76
-
-
0027463562
-
Possible role of over-glycosylation in the type I collagen triple helical domain in the molecular pathogenesis of osteogenesis imperfecta
-
Tenni, R., Valli, M., Rossi, A., and Cetta, G. (1993) Possible role of over- glycosylation in the type I collagen triple helical domain in the molecular pathogenesis of osteogenesis imperfecta. Am. J. Med. Genet. 45, 252-256.
-
(1993)
Am. J. Med. Genet.
, vol.45
, pp. 252-256
-
-
Tenni, R.1
Valli, M.2
Rossi, A.3
Cetta, G.4
-
77
-
-
0024312169
-
Type II collagen defects in the chondrodysplasias. I. Spondyloepiphyseal dysplasias
-
Murray, L. W., Bautista, J., James, P. L., and Rimoin, D. L. (1989) Type II collagen defects in the chondrodysplasias. I. Spondyloepiphyseal dysplasias. Am. J. Hum. Genet. 45, 5-15.
-
(1989)
Am. J. Hum. Genet.
, vol.45
, pp. 5-15
-
-
Murray, L.W.1
Bautista, J.2
James, P.L.3
Rimoin, D.L.4
-
78
-
-
0034629259
-
An improved synthesis of a galactosylated hydroxylysine building block and its use in solid-phase glycopeptide synthesis
-
Holm, B., Broddefalk, J., Flodell, S., Wellner, E., and Kihlberg, J. (2000) An improved synthesis of a galactosylated hydroxylysine building block and its use in solid-phase glycopeptide synthesis. Tetrahedron 56, 1579-1586.
-
(2000)
Tetrahedron
, vol.56
, pp. 1579-1586
-
-
Holm, B.1
Broddefalk, J.2
Flodell, S.3
Wellner, E.4
Kihlberg, J.5
-
79
-
-
0037040286
-
Mapping the ligand-binding sites and disease-associated mutations on the most abundant protein in the human, type I collagen
-
Di Lullo, G. A., Sweeney, S. M., Körkkö, J., Ala-Kokko, L., and Antonio, J. D. (2002) Mapping the ligand-binding sites and disease-associated mutations on the most abundant protein in the human, type I collagen. J. Biol. Chem. 277, 4223-4231.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4223-4231
-
-
Di Lullo, G.A.1
Sweeney, S.M.2
Körkkö, J.3
Ala-Kokko, L.4
Antonio, J.D.5
-
80
-
-
78650748366
-
Molecular and structural mapping of collagen fibril interactions
-
Orgel, J. P., San Antonio, J. D., and Antipova, O. (2010) Molecular and structural mapping of collagen fibril interactions. Connect. Tissue Res. 52, 2-17.
-
(2010)
Connect. Tissue Res.
, vol.52
, pp. 2-17
-
-
Orgel, J.P.1
San Antonio, J.D.2
Antipova, O.3
-
81
-
-
84896092950
-
Variation in the helical structure of native collagen
-
Orgel, J. P., Persikov, A. V., and Antipova, O. (2014) Variation in the helical structure of native collagen. PloS One 9, e89519.
-
(2014)
PloS One
, vol.9
, pp. e89519
-
-
Orgel, J.P.1
Persikov, A.V.2
Antipova, O.3
-
82
-
-
0032511415
-
T cells recognize a glycopeptide derived from type II collagen in a model for rheumatoid arthritis
-
Broddefalk, J., Bäcklund, J., Almqvist, F., Johansson, M., Holmdahl, R., and Kihlberg, J. (1998) T cells recognize a glycopeptide derived from type II collagen in a model for rheumatoid arthritis. J. Amer. Chem. Soc. 120, 7676-7683.
-
(1998)
J. Amer. Chem. Soc.
, vol.120
, pp. 7676-7683
-
-
Broddefalk, J.1
Bäcklund, J.2
Almqvist, F.3
Johansson, M.4
Holmdahl, R.5
Kihlberg, J.6
-
83
-
-
15444342696
-
The structural basis of MHC control of collageninduced arthritis; binding of the immunodominant type II collagen 256-270 glycopeptide to H-2Aq and H-2Ap molecules
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Kjellén, P., Brunsberg, U., Broddefalk, J., Hansen, B., Vestberg, M., Ivarsson, I., Engström, A., Svejgaard, A., Kihlberg, J., Fugger, L., and Holmdahl, R. (1998) The structural basis of MHC control of collageninduced arthritis; binding of the immunodominant type II collagen 256-270 glycopeptide to H-2Aq and H-2Ap molecules. Eur. J. Immunol. 28, 755-767.
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(1998)
Eur. J. Immunol.
, vol.28
, pp. 755-767
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Kjellén, P.1
Brunsberg, U.2
Broddefalk, J.3
Hansen, B.4
Vestberg, M.5
Ivarsson, I.6
Engström, A.7
Svejgaard, A.8
Kihlberg, J.9
Fugger, L.10
Holmdahl, R.11
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