메뉴 건너뛰기




Volumn 23, Issue 7, 2014, Pages 1780-1798

Shotgun microbial profiling of fossil remains

Author keywords

ancient DNA; metagenomics; microbial profiling; next generation sequencing

Indexed keywords

ANCIENT DNA; DNA;

EID: 84896919370     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12690     Document Type: Article
Times cited : (50)

References (76)
  • 1
    • 84875759214 scopus 로고    scopus 로고
    • Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions
    • Adler CJ, Dobney K, Weyrich LS, et al,. (2013) Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions. Nature Genetics, 45, 450-455.
    • (2013) Nature Genetics , vol.45 , pp. 450-455
    • Adler, C.J.1    Dobney, K.2    Weyrich, L.S.3
  • 2
    • 84868087346 scopus 로고    scopus 로고
    • The half-life of DNA in bone: Measuring decay kinetics in 158 dated fossils
    • Allentoft ME, Collins M, Harker D, et al,. (2012) The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proceedings Biological Sciences, 279, 4724-4733.
    • (2012) Proceedings Biological Sciences , vol.279 , pp. 4724-4733
    • Allentoft, M.E.1    Collins, M.2    Harker, D.3
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schäffer AA, et al,. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25, 3389-3402.
    • (1997) Nucleic Acids Research , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3
  • 4
    • 0032868141 scopus 로고    scopus 로고
    • Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
    • Andrews RM, Kubacka I, Chinnery PF, et al,. (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nature Genetics, 23, 147.
    • (1999) Nature Genetics , vol.23 , pp. 147
    • Andrews, R.M.1    Kubacka, I.2    Chinnery, P.F.3
  • 5
    • 0030607184 scopus 로고    scopus 로고
    • The speed of post-mortem change to the human skeleton and its taphonomic significance
    • Bell LS, Skinner MF, Jones SJ, (1996) The speed of post-mortem change to the human skeleton and its taphonomic significance. Forensic Science International, 82, 129-149.
    • (1996) Forensic Science International , vol.82 , pp. 129-149
    • Bell, L.S.1    Skinner, M.F.2    Jones, S.J.3
  • 6
    • 80054987989 scopus 로고    scopus 로고
    • A draft genome of Yersinia pestis from victims of the Black Death
    • Bos KI, Schuenemann VJ, Golding GB, et al,. (2011) A draft genome of Yersinia pestis from victims of the Black Death. Nature, 478, 506-510.
    • (2011) Nature , vol.478 , pp. 506-510
    • Bos, K.I.1    Schuenemann, V.J.2    Golding, G.B.3
  • 8
    • 67650831473 scopus 로고    scopus 로고
    • Targeted retrieval and analysis of five Neandertal mtDNA genomes
    • Briggs AW, Good JM, Green RE, et al,. (2009) Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science, 325, 318-321.
    • (2009) Science , vol.325 , pp. 318-321
    • Briggs, A.W.1    Good, J.M.2    Green, R.E.3
  • 9
    • 77952206860 scopus 로고    scopus 로고
    • Targeted investigation of the Neandertal genome by array-based sequence capture
    • Burbano HA, Hodges E, Green RE, et al,. (2010) Targeted investigation of the Neandertal genome by array-based sequence capture. Science, 328, 723-725.
    • (2010) Science , vol.328 , pp. 723-725
    • Burbano, H.A.1    Hodges, E.2    Green, R.E.3
  • 10
    • 84855512692 scopus 로고    scopus 로고
    • DNA in ancient bone - Where is it located and how should we extract it?
    • Campos PF, Craig OE, Turner-Walker G, et al,. (2012) DNA in ancient bone-where is it located and how should we extract it? Annals of Anatomy, 194, 7-16.
    • (2012) Annals of Anatomy , vol.194 , pp. 7-16
    • Campos, P.F.1    Craig, O.E.2    Turner-Walker, G.3
  • 11
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • Caporaso JG, Bittinger K, Bushman FD, et al,. (2010a) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics, 26, 266-267.
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1    Bittinger, K.2    Bushman, F.D.3
  • 12
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al,. (2010b) QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7, 335-336.
    • (2010) Nature Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 13
    • 84890151805 scopus 로고    scopus 로고
    • Pulling out the 1%: Whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries
    • Carpenter ML, Buenrostro JD, Valdiosera C, et al,. (2013) Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries. The American Journal of Human Genetics, 93, 852-864.
    • (2013) The American Journal of Human Genetics , vol.93 , pp. 852-864
    • Carpenter, M.L.1    Buenrostro, J.D.2    Valdiosera, C.3
  • 14
    • 0038760902 scopus 로고
    • A type of bacteria abundant of productive soils, but apparently lacking in certain soils of low productivity
    • Conn HJ, (1928) A type of bacteria abundant of productive soils, but apparently lacking in certain soils of low productivity. New York State Agricultural Experimental Station Technical Bulletin No, 138, 3-26.
    • (1928) New York State Agricultural Experimental Station Technical Bulletin No , vol.138 , pp. 3-26
    • Conn, H.J.1
  • 16
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, et al,. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environment Microbiology, 72, 5069-5072.
    • (2006) Applied and Environment Microbiology , vol.72 , pp. 5069-5072
    • Desantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 18
    • 0036668904 scopus 로고    scopus 로고
    • On the circumstances surrounding the preservation and analysis of very old DNA
    • Geigl E-M, (2002) On the circumstances surrounding the preservation and analysis of very old DNA. Archaeometry, 44, 337-342.
    • (2002) Archaeometry , vol.44 , pp. 337-342
    • Geigl, E.-M.1
  • 19
    • 1242273715 scopus 로고    scopus 로고
    • Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims
    • Gilbert MT, Cuccui J, White W, et al,. (2004) Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims. Microbiology, 150, 341-354.
    • (2004) Microbiology , vol.150 , pp. 341-354
    • Gilbert, M.T.1    Cuccui, J.2    White, W.3
  • 20
    • 15744383335 scopus 로고    scopus 로고
    • Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy
    • Gilbert MTP, Rudbeck L, Willerslev E, et al,. (2005) Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy. Journal of Archaeological Science, 32, 785-793.
    • (2005) Journal of Archaeological Science , vol.32 , pp. 785-793
    • Gilbert, M.T.P.1    Rudbeck, L.2    Willerslev, E.3
  • 21
    • 79960421225 scopus 로고    scopus 로고
    • MapDamage: Testing for damage patterns in ancient DNA sequences
    • Ginolhac A, Rasmussen M, Gilbert MT, et al,. (2011) mapDamage: testing for damage patterns in ancient DNA sequences. Bioinformatics, 27, 2153-2155.
    • (2011) Bioinformatics , vol.27 , pp. 2153-2155
    • Ginolhac, A.1    Rasmussen, M.2    Gilbert, M.T.3
  • 22
    • 84860690205 scopus 로고    scopus 로고
    • Improving the performance of true single molecule sequencing for ancient DNA
    • Ginolhac A, Vilstrup J, Stenderup J, et al,. (2012) Improving the performance of true single molecule sequencing for ancient DNA. BMC Genomics, 13, 177.
    • (2012) BMC Genomics , vol.13 , pp. 177
    • Ginolhac, A.1    Vilstrup, J.2    Stenderup, J.3
  • 23
    • 77952136530 scopus 로고    scopus 로고
    • A draft sequence of the Neandertal genome
    • Green RE, Krause J, Briggs AW, et al,. (2010) A draft sequence of the Neandertal genome. Science, 328, 710-722.
    • (2010) Science , vol.328 , pp. 710-722
    • Green, R.E.1    Krause, J.2    Briggs, A.W.3
  • 24
    • 34047240363 scopus 로고    scopus 로고
    • Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor?
    • Haile J, Holdaway R, Oliver K, et al,. (2007) Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor? Molecular Biology and Evolution, 24, 982-989.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 982-989
    • Haile, J.1    Holdaway, R.2    Oliver, K.3
  • 25
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SY, Phillips MJ, Cooper A, et al,. (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22, 1561-1568.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1561-1568
    • Ho, S.Y.1    Phillips, M.J.2    Cooper, A.3
  • 26
    • 0029925452 scopus 로고    scopus 로고
    • DNA damage and DNA sequence retrieval from ancient tissues
    • Höss M, Jaruga P, Zastawny TH, et al,. (1996) DNA damage and DNA sequence retrieval from ancient tissues. Nucleic Acids Research, 24, 1304-1307.
    • (1996) Nucleic Acids Research , vol.24 , pp. 1304-1307
    • Höss, M.1    Jaruga, P.2    Zastawny, T.H.3
  • 27
    • 84896963128 scopus 로고    scopus 로고
    • The living dead: Bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition
    • Hyde ER, Haarmann DP, Lynne AM, et al,. (2013) The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition. PLoS ONE, 8, e77733.
    • (2013) PLoS ONE , vol.8
    • Hyde, E.R.1    Haarmann, D.P.2    Lynne, A.M.3
  • 29
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen PH, (2006) Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Applied and Environmental Microbiology, 72, 1719-1728.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 30
    • 84879910635 scopus 로고    scopus 로고
    • MapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters
    • Jónsson H, Ginolhac A, Schubert M, et al,. (2013) mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics, 29, 1682-1684.
    • (2013) Bioinformatics , vol.29 , pp. 1682-1684
    • Jónsson, H.1    Ginolhac, A.2    Schubert, M.3
  • 31
    • 84863230079 scopus 로고    scopus 로고
    • New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
    • Keller A, Graefen A, Ball M, et al,. (2012) New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nature Communications, 3, 698.
    • (2012) Nature Communications , vol.3 , pp. 698
    • Keller, A.1    Graefen, A.2    Ball, M.3
  • 32
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nature Methods, 9, 357-359.
    • (2012) Nature Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 33
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 34
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A, et al,. (2009) The Sequence alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 35
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T, (1993) Instability and decay of the primary structure of DNA. Nature, 362, 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 36
    • 84863101693 scopus 로고    scopus 로고
    • AdapterRemoval: Easy cleaning of next generation sequencing reads
    • Lindgreen S, (2012) AdapterRemoval: easy cleaning of next generation sequencing reads. BMC Research Notes, 5, 337.
    • (2012) BMC Research Notes , vol.5 , pp. 337
    • Lindgreen, S.1
  • 37
    • 24744437359 scopus 로고    scopus 로고
    • Extensive human DNA contamination in extracts from ancient dog bones and teeth
    • Malmström H, Stora J, Dalen L, et al,. (2005) Extensive human DNA contamination in extracts from ancient dog bones and teeth. Molecular Biology and Evolution, 22, 2040-2047.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 2040-2047
    • Malmström, H.1    Stora, J.2    Dalen, L.3
  • 38
    • 84892942971 scopus 로고    scopus 로고
    • Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
    • Martin MD, Cappellini E, Samaniego JA, et al,. (2013) Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nature Communications, 4, 2172.
    • (2013) Nature Communications , vol.4 , pp. 2172
    • Martin, M.D.1    Cappellini, E.2    Samaniego, J.A.3
  • 39
    • 84885895443 scopus 로고    scopus 로고
    • A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
    • Metcalf JL, Parfrey LW, Gonzalez A, et al,. (2013) A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. eLife, 2, e01104.
    • (2013) ELife , vol.2
    • Metcalf, J.L.1    Parfrey, L.W.2    Gonzalez, A.3
  • 40
    • 84867331947 scopus 로고    scopus 로고
    • A high-coverage genome sequence from an archaic Denisovan individual
    • Meyer M, Kircher M, Gansauge MT, et al,. (2012) A high-coverage genome sequence from an archaic Denisovan individual. Science, 338, 222-226.
    • (2012) Science , vol.338 , pp. 222-226
    • Meyer, M.1    Kircher, M.2    Gansauge, M.T.3
  • 41
    • 84875404794 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: Extensions and updates 2013
    • Meyer LR, Zweig AS, Hinrichs AS, et al,. (2013) The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Research, 41, D64-D69.
    • (2013) Nucleic Acids Research , vol.41
    • Meyer, L.R.1    Zweig, A.S.2    Hinrichs, A.S.3
  • 42
    • 56749119854 scopus 로고    scopus 로고
    • Sequencing the nuclear genome of the extinct woolly mammoth
    • Miller W, Drautz DI, Ratan A, et al,. (2008) Sequencing the nuclear genome of the extinct woolly mammoth. Nature, 456, 387-390.
    • (2008) Nature , vol.456 , pp. 387-390
    • Miller, W.1    Drautz, D.I.2    Ratan, A.3
  • 44
    • 0033068222 scopus 로고    scopus 로고
    • Bone porosity and the use of mercury intrusion porosimetry in bone diagenesis studies
    • Nielsen-Marsh CM, Hedges REM, (1999) Bone porosity and the use of mercury intrusion porosimetry in bone diagenesis studies. Archaeometry, 41, 165-174.
    • (1999) Archaeometry , vol.41 , pp. 165-174
    • Nielsen-Marsh, C.M.1    Hedges, R.E.M.2
  • 45
    • 0029130110 scopus 로고
    • A genetic study of 2000 year old human remains from Japan using mitochondrial DNA sequences
    • Oota H, Saitou N, Matsushita T, et al,. (1995) A genetic study of 2000 year old human remains from Japan using mitochondrial DNA sequences. American Journal of Physical Anthropology, 98, 133-145.
    • (1995) American Journal of Physical Anthropology , vol.98 , pp. 133-145
    • Oota, H.1    Saitou, N.2    Matsushita, T.3
  • 47
    • 80053495571 scopus 로고    scopus 로고
    • True single-molecule DNA sequencing of a Pleistocene horse bone
    • Orlando L, Ginolhac A, Raghavan M, et al,. (2011) True single-molecule DNA sequencing of a Pleistocene horse bone. Genome Research, 21, 1705-1719.
    • (2011) Genome Research , vol.21 , pp. 1705-1719
    • Orlando, L.1    Ginolhac, A.2    Raghavan, M.3
  • 48
    • 84879888373 scopus 로고    scopus 로고
    • Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
    • Orlando L, Ginolhac A, Zhang G, et al,. (2013) Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature, 499, 74-78.
    • (2013) Nature , vol.499 , pp. 74-78
    • Orlando, L.1    Ginolhac, A.2    Zhang, G.3
  • 50
    • 84892911658 scopus 로고    scopus 로고
    • Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    • DOI: 10.1101/gr.163592.113.
    • Pedersen JS, Valen E, Velazquez AMV, et al,. (2014) Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Research, gr-163592. DOI: 10.1101/gr.163592.113.
    • (2014) Genome Research
    • Pedersen, J.S.1    Valen, E.2    Velazquez, A.M.V.3
  • 51
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team. R Foundation for Statistical Computing, Vienna, Austria. Available from.
    • R Core Team (2013) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Available from http://www.R-project.org/.
    • (2013) R: A Language and Environment for Statistical Computing
  • 52
    • 76749141381 scopus 로고    scopus 로고
    • Ancient human genome sequence of an extinct Palaeo-Eskimo
    • Rasmussen M, Li Y, Lindgreen S, et al,. (2010) Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature, 463, 757-762.
    • (2010) Nature , vol.463 , pp. 757-762
    • Rasmussen, M.1    Li, Y.2    Lindgreen, S.3
  • 53
    • 78650850475 scopus 로고    scopus 로고
    • Genetic history of an archaic hominin group from Denisova Cave in Siberia
    • Reich D, Green RE, Kircher M, et al,. (2010) Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468, 1053-1060.
    • (2010) Nature , vol.468 , pp. 1053-1060
    • Reich, D.1    Green, R.E.2    Kircher, M.3
  • 54
    • 34548579114 scopus 로고    scopus 로고
    • Ancient DNA extraction from bones and teeth
    • Rohland N, Hofreiter M, (2007) Ancient DNA extraction from bones and teeth. Nature Protocols, 2, 1756-1762.
    • (2007) Nature Protocols , vol.2 , pp. 1756-1762
    • Rohland, N.1    Hofreiter, M.2
  • 55
    • 2442560471 scopus 로고    scopus 로고
    • Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens
    • 818-821.
    • Rohland N, Siedel H, Hofreiter M, (2004) Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. BioTechniques, 36, 814-816, 818-821.
    • (2004) BioTechniques , vol.36 , pp. 814-816
    • Rohland, N.1    Siedel, H.2    Hofreiter, M.3
  • 57
    • 84859112401 scopus 로고    scopus 로고
    • Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
    • Sawyer S, Krause J, Guschanski K, et al,. (2012) Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS ONE, 7, e34131.
    • (2012) PLoS ONE , vol.7
    • Sawyer, S.1    Krause, J.2    Guschanski, K.3
  • 58
    • 84860683374 scopus 로고    scopus 로고
    • Improving ancient DNA read mapping against modern reference genomes
    • Schubert M, Ginolhac A, Lindgreen S, et al,. (2012) Improving ancient DNA read mapping against modern reference genomes. BMC Genomics, 13, 178.
    • (2012) BMC Genomics , vol.13 , pp. 178
    • Schubert, M.1    Ginolhac, A.2    Lindgreen, S.3
  • 59
    • 84899508956 scopus 로고    scopus 로고
    • Characterization of ancient and modern genomes by sequencing, SNP detection, phylogenomic and metagenomic analysis
    • In press.
    • Schubert M, Ermini L, Der Sarkissian C, et al,. (2014) Characterization of ancient and modern genomes by sequencing, SNP detection, phylogenomic and metagenomic analysis. Nature Protocols. In press.
    • (2014) Nature Protocols
    • Schubert, M.1    Ermini, L.2    Der Sarkissian, C.3
  • 61
    • 84880294680 scopus 로고    scopus 로고
    • Genome-wide comparison of medieval and modern Mycobacterium leprae
    • Schuenemann VJ, Singh P, Mendum TA, et al,. (2013) Genome-wide comparison of medieval and modern Mycobacterium leprae. Science, 341, 179-183.
    • (2013) Science , vol.341 , pp. 179-183
    • Schuenemann, V.J.1    Singh, P.2    Mendum, T.A.3
  • 62
    • 67249110285 scopus 로고    scopus 로고
    • New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains
    • Schwarz C, Debruyne R, Kuch M, et al,. (2009) New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains. Nucleic Acids Research, 37, 3215-3229.
    • (2009) Nucleic Acids Research , vol.37 , pp. 3215-3229
    • Schwarz, C.1    Debruyne, R.2    Kuch, M.3
  • 63
    • 79959383523 scopus 로고    scopus 로고
    • Metagenomic biomarker discovery and explanation
    • Segata N, Izard J, Waldron L, et al,. (2011) Metagenomic biomarker discovery and explanation. Genome Biology, 12, R60.
    • (2011) Genome Biology , vol.12
    • Segata, N.1    Izard, J.2    Waldron, L.3
  • 64
    • 84864440400 scopus 로고    scopus 로고
    • Metagenomic microbial community profiling using unique clade-specific marker genes
    • Segata N, Waldron L, Ballarini A, et al,. (2012) Metagenomic microbial community profiling using unique clade-specific marker genes. Nature Methods, 9, 811-814.
    • (2012) Nature Methods , vol.9 , pp. 811-814
    • Segata, N.1    Waldron, L.2    Ballarini, A.3
  • 66
    • 84893629592 scopus 로고    scopus 로고
    • Ligation bias in Illumina next-generation DNA libraries: Implications for sequencing ancient genomes
    • Seguin-Orlando A, Schubert M, Clary J, et al,. (2013) Ligation bias in Illumina next-generation DNA libraries: implications for sequencing ancient genomes. PLoS ONE, 8, e78575.
    • (2013) PLoS ONE , vol.8
    • Seguin-Orlando, A.1    Schubert, M.2    Clary, J.3
  • 67
    • 84860132302 scopus 로고    scopus 로고
    • Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe
    • Skoglund P, Malmström H, Raghavan M, et al,. (2012) Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science, 336, 466-469.
    • (2012) Science , vol.336 , pp. 466-469
    • Skoglund, P.1    Malmström, H.2    Raghavan, M.3
  • 68
    • 0242711368 scopus 로고    scopus 로고
    • The thermal history of human fossils and the likelihood of successful DNA amplification
    • Smith CI, Chamberlain AT, Riley MS, et al,. (2003) The thermal history of human fossils and the likelihood of successful DNA amplification. Journal of Human Evolution, 45, 203-217.
    • (2003) Journal of Human Evolution , vol.45 , pp. 203-217
    • Smith, C.I.1    Chamberlain, A.T.2    Riley, M.S.3
  • 69
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: An R package for assessing the uncertainty in hierarchical clustering
    • Suzuki R, Shimodaira H, (2006) Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics, 22, 1540-1542.
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 70
    • 84855258227 scopus 로고    scopus 로고
    • Molecular identification of bacteria by total sequence screening: Determining the cause of death in ancient human subjects
    • Thèves C, Senescau A, Vanin S, et al,. (2011) Molecular identification of bacteria by total sequence screening: determining the cause of death in ancient human subjects. PLoS ONE, 6, e21733.
    • (2011) PLoS ONE , vol.6
    • Thèves, C.1    Senescau, A.2    Vanin, S.3
  • 71
    • 84871194834 scopus 로고    scopus 로고
    • Insights from characterizing extinct human gut microbiomes
    • Tito RY, Knights D, Metcalf J, et al,. (2012) Insights from characterizing extinct human gut microbiomes. PLoS ONE, 7, e51146.
    • (2012) PLoS ONE , vol.7
    • Tito, R.Y.1    Knights, D.2    Metcalf, J.3
  • 72
    • 70449379045 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis, and population genetics of the domestic horse
    • Wade CM, Giulotto E, Sigurdsson S, et al,. (2009) Genome sequence, comparative analysis, and population genetics of the domestic horse. Science, 326, 865-867.
    • (2009) Science , vol.326 , pp. 865-867
    • Wade, C.M.1    Giulotto, E.2    Sigurdsson, S.3
  • 73
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, et al,. (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73, 5261-5267.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3
  • 74
    • 0028132144 scopus 로고
    • The complete mitochondrial DNA sequence of the horse, Equus caballus: Extensive heteroplasmy of the control region
    • Xu X, Arnason U, (1994) The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region. Gene, 148, 357-362.
    • (1994) Gene , vol.148 , pp. 357-362
    • Xu, X.1    Arnason, U.2
  • 75
    • 84879037102 scopus 로고    scopus 로고
    • The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
    • Yoshida K, Schuenemann VJ, Cano LM, et al,. (2013) The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. eLife, 2, e00731.
    • (2013) ELife , vol.2
    • Yoshida, K.1    Schuenemann, V.J.2    Cano, L.M.3
  • 76
    • 84877022196 scopus 로고    scopus 로고
    • No ancient DNA damage in Actinobacteria from the Neanderthal bone
    • Zaremba-Niedźwiedzka K, Andersson SGE, (2013) No ancient DNA damage in Actinobacteria from the Neanderthal bone. PLoS ONE, 8, e62799.
    • (2013) PLoS ONE , vol.8
    • Zaremba-Niedźwiedzka, K.1    Andersson, S.G.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.