Plant pathogenic bacteria in open irrigation systems: What risk for crop health?

Plant Pathology

Volumn 64, Issue 4, 2015, Pages 757-766

  Lamichhane, J R ^a   Bartoli, C ^b  

^a INRA   (France)

^b LABORATOIRE DES INTERACTIONS PLANTES MICROORGANISMES LIPM   (France)

Author keywords

Aquatic ecology; Disease emergence; Monitoring; Pathogen dissemination; Risk assessment; Surveillance

Indexed keywords

AQUATIC ECOSYSTEM; BACTERIUM; CULTIVATION; EPIDEMIC; IRRIGATION SYSTEM; MONITORING; PATHOGEN; RISK ASSESSMENT; SOCIOECONOMIC IMPACT; SURVIVAL;

EID: 84935704146     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/ppa.12371     Document Type: Review

References (82)

1. Álvarez B, López MM, Biosca EG, 2007. Influence of native microbiota on survival of Ralstonia solanacearum phylotype II in river water microcosms. Applied and Environmental Microbiology 73, 7210-7.
2. Álvarez B, López MM, Biosca EG, 2008. Survival strategies and pathogenicity of Ralstonia solanacearum phylotype II subjected to prolonged starvation in environmental water microcosms. Microbiology 154, 3590-8.
3. Atmatjidou VP, 1991. Dissemination and transmission of Xanthomonas campestris pv. begoniae in an ebb and flow irrigation system. Plant Disease 75, 1261-5.
4. Baltrus D, 2013. Exploring the costs of horizontal gene transfer. Trends in Ecology & Evolution 28, 489-95.
5. Bartoli C, Lamichhane JR, Berge O et al., 2015. A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker. Molecular Plant Pathology 16, 137-49.
6. Bech K, 1994. Spread of Erwinia chrysanthemi in Kalanchoe blossfeldiana. Journal of Phytopathology 141, 285-92.
7. Berge O, Monteil CL, Bartoli C et al., 2014. A user's guide to a data base of the diversity of Pseudomonas syringae and its application to classifying strains in this phylogenetic complex. PLoS ONE 9, e105547.
8. Bodenhausen N, Bortfeld-Miller M, Ackermann M, Vorholt JA, 2014. A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota. PLoS Genetics 10, e1004283.
9. Brookes JD, Antenucci J, Hipsey M, Burch MD, Ashbolt NJ, Ferguson C, 2004. Fate and transport of pathogens in lakes and reservoirs. Environment International 30, 741-59.
10. Brouwer C, Hoevenaars JPM, van Bosch BE, Hatcho N, Heibloem M, 1992. Irrigation water management: training manual no. 6 - Scheme Irrigation Water Needs and Supply.
11. Cahill G, Fraser K, Kowalewska MJ, Kenyon DM, Saddler GS, 2010. Recent findings from the Dickeya survey and monitoring programme. In: Heilbronn ed. Proceedings Crop Protection in Northern Britain 2010 Dundee, UK: Association of Crop Protection in Northern Britain, 171-6. [http://www.sipr.ac.uk/CPNB/Index_and_Proceedings_2010.pdf]
12. Cappaert MR, 1988. Irrigation water as a source of inoculum of soft rot erwinias for aerial stem rot of potatoes. Phytopathology 78, 1668.
13. Caruso P, Palomo JL, Bertolini E, Alvarez B, López MM, Biosca EG, 2005. Seasonal variation of Ralstonia solanacearum biovar 2 populations in a Spanish river: recovery of stressed cells at low temperatures. Applied and Environmental Microbiology 71, 140-8.
14. Cother EJ, Gilbert RL, 1990. Presence of Erwinia chrysanthemi in two major river systems and their alpine sources in Australia. Journal of Applied Bacteriology 69, 729-38.
15. Cother EJ, Bradley JK, Gillings MR, Fahy PC, 1992. Characterization of Erwinia chrysanthemi biovars in alpine water sources by biochemical properties, GLC fatty acid analysis and genomic DNA fingerprinting. Journal of Applied Bacteriology 73, 99-107.
16. Cottyn B, Baeyen S, Pauwelyn E, 2011. Development of a real-time PCR assay for Pseudomonas cichorii, the causal agent of midrib rot in greenhouse-grown lettuce, and its detection in irrigating water. Plant Pathology 60, 453-61.
17. Cruz L, Eloy M, Quirino F, Oliveira H, Tenreiro R, 2012. Molecular epidemiology of Ralstonia solanacearum strains from plants and environmental sources in Portugal. European Journal of Plant Pathology 133, 687-706.
18. Elphinstone JG, Stanford HM, Stead ED, 1998. Survival and transmission of Ralstonia solanacearum in aquatic plants of Solanum dulcamara and associated surface water in England. EPPO Bulletin 28, 93-4.
19. European Union, 2002. Council Directive 2002/89/EC of 28 November 2002 amending Directive 2000/29/EC on protective measures against the introduction into the community of organisms harmful to plants. European Union Official Journal 355, 45-60.
20. Farag N, Stead DE, Janse JD, 1999. Ralstonia (Pseudomonas) solanacearum race 2, biovar 1, detected in surface (irrigation) water in Egypt. Journal of Phytopathology 147, 374-6.
21. Federico G, 2005. Feeding the World: An Economic History of Agriculture 1800-2000. Princeton, NJ, USA: Princeton University Press.
22. Gallelli A, Talocci S, L'Aurora A, Loreti S, 2011. Detection of Pseudomonas syringae pv. actinidiae, causal agent of bacterial canker of kiwifruit, from symptomless fruits, and twigs, and from pollen. Phytopathologia Mediterranea 50, 473-83.
23. Gent DH, Lang JM, Schwartz HF, Bartolo ME, 2005. Inoculum sources and survival of Xanthomonas axonopodis pv. allii in Colorado. Plant Disease 89, 507-14.
24. Gilbert JA, Dupont CL, 2011. Microbial metagenomics: beyond the genome. Annual Review of Marine Science 3, 347-71.
25. Harrison MD, Franc GD, Maddox DA, Michaud JE, McCarter NJ, 1987. Presence of Erwinia carotovora in surface water in North America. Journal of Applied Bacteriology 62, 565-70.
26. Hirano SS, Rouse DI, Clayton MK, Upper CD, 1995. Pseudomonas syringae pv. syringae and bacterial brown spot of snap bean: a study of epiphytic phytopathogenic bacteria and associated disease. Plant Disease 79, 1085-93.
27. Hoitink HAJ, Fynn RP, McMahon RW, Atmatjidou V, 1991. Transmission of plant pathogens in an ebb and flood system. Ohio Florists' Association Bulletin 742, 5-9.
28. Hong CX, Moorman GW, 2005. Plant pathogens in irrigation water: challenges and opportunities. Critical Reviews in Plant Sciences 24, 189-208.
29. Hong JC, Momol MT, Jones JB, 2008. Detection of Ralstonia solanacearum in irrigation ponds and aquatic weeds associated with the ponds in North Florida. Plant Disease 92, 1674-82.
30. Howell TA, 2003. Irrigation Efficiency. In: Stewart BA, Howell T, eds. Encyclopedia of Water Science. New York, USA: Marcell Dekker Inc., 467-72.
31. Iacobellis NS, Devay JE, 1986. Long-term storage of plant-pathogenic bacteria in sterile distilled water. Applied and Environmental Microbiology 52, 388-9.
32. Irwin RD, Vaughan EK, 1972. Bacterial rot of onion and the relation of irrigation water to disease incidence. Phytopathology 62, 1103.
33. Janse JD, Araluppan FAX, Schans J, Wenneker M, Westerhuis W, 1998. Experiences with bacterial brown rot Ralstonia solanacearum biovar 2, race 3, in The Netherlands. In: Prior P, Allen C, Elphinstone J, eds. Bacterial Wilt Disease. Molecular and Ecological Aspects. Heidelberg, Germany: Springer-Verlag, 147-52.
34. Jenkins SF Jr, 1983. Root diseases of vegetables in hydroponic culture systems in North Carolina greenhouses. Plant Disease 67, 968.
35. Lamichhane JR, 2014. Xanthomonas arboricola diseases of stone fruit, almond and walnut trees: progress toward understanding and management. Plant Disease 98, 1600-10.
36. Lamichhane JR, Varvaro L, 2013. Epiphytic Pseudomonas savastanoi pv. savastanoi can infect and cause olive knot disease on Olea europaea subsp. cuspidata. Australasian Plant Pathology 42, 219-25.
37. Lamichhane JR, Fabi A, Ridolfi R, Varvaro L, 2013. Epidemiological study of hazelnut bacterial blight in central Italy by using laboratory analysis and geostatistics. PLoS ONE 8, e56298.
38. Lamichhane JR, Barzman M, Booij K et al., 2014a. Robust cropping systems to tackle pests under climate change: a review. Agronomy for Sustainable Development. doi:10.1007/s13593-014-0275-9.
39. Lamichhane JR, Varvaro L, Parisi L, Audergon J-M, Morris CE, 2014b. Disease and frost damage of woody plants caused by Pseudomonas syringe: seeing the forest for the trees. Advances in Agronomy 126, 235-95.
40. Lamichhane JR, Messéan A, Morris CE, 2015. Insights into epidemiology and control of diseases of annual plants caused by the Pseudomonas syringae species complex. Journal of General Plant Pathology. in press.
41. Laue BE, Steele H, Green S, 2014. Survival, cold tolerance and seasonality of infection of European horse chestnut (Aesculus hippocastanum) by Pseudomonas syringae pv. aesculi. Plant Pathology 63, 1417-25.
42. Laurila J, Ahola V, Lehtinen A et al., 2008. Characterization of Dickeya strains isolated from potato and river water samples in Finland. European Journal of Plant Pathology 122, 213-25.
43. Laurila J, Hannukkala A, Nykyri J et al., 2010. Symptoms and yield reduction caused by Dickeya spp. strains isolated from potato and river water in Finland. European Journal of Plant Pathology 126, 249-62.
44. Liao CH, Shollenberger LM, 2003. Survivability and long-term preservation of bacteria in water and in phosphate-buffered saline. Letters in Applied Microbiology 37, 45-50.
45. Madden LV, Wheelis M, 2003. The threat of plant pathogens as weapons against U.S. crops. Annual Review of Phytopathology 41, 155-76.
46. McCarter-Zorner NJ, Franc GD, Harrison MD, Al E, 1984. Soft rot Erwinia bacteria in surface and underground waters in southern Scotland and in Colorado, United States. Journal of Applied Bacteriology 57, 95-105.
47. Mew TW, 1992. Bacterial blight. In: Webster RK, Gunnell PS, eds. Compendium of Rice Diseases. St Paul, MN, USA: American Phytopathological Society, 10-1.
48. Monteil CL, Lafolie F, Laurent J et al., 2014a. Soil water flow is a source of the plant pathogen Pseudomonas syringae in subalpine headwaters. Environmental Microbiology 16, 2038-52.
49. Monteil CL, Bardin M, Morris CE, 2014b. Features of air masses associated with the deposition of Pseudomonas syringae and Botrytis cinerea by rain and snowfall. ISME Journal 8, 2290-304.
50. Morris CE, Sands DC, Vinatzer BA et al., 2008. The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle. ISME Journal 2, 321-34.
51. Morris CE, Sands DC, Vanneste JL et al., 2010. Inferring the evolutionary history of the plant pathogen Pseudomonas syringae from Its biogeography in headwaters of rivers in North America, Europe, and New Zealand. mBio 1, e00107-10.
52. Norman DJ, Yuen JMF, Resendiz R, Boswell J, 2003. Characterization of Erwinia populations from nursery retention ponds and lakes infecting ornamental plants in Florida. Plant Disease 87, 193-6.
53. Nyvall RF, 1999. Field Crop Diseases. Ames, IA, USA: Iowa State University Press.
54. Olsson K, 1976. Experience of brown rot caused by Pseudomonas solanacearum in Sweden. EPPO Bulletin 6, 199-207.
55. Paret ML, Kubota R, Jenkins DM, Alvarez AM, 2010. Survival of Ralstonia solanacearum race 4 in drainage water and soil and detection with immunodiagnostic and DNA-based assays. Horttechnology 20, 539-48.
56. Parkinson N, DeVos P, Pirhonen M, Elphinstone J, 2014. Dickeya aquatica sp. nov., isolated from waterways. International Journal of Systematic and Evolutionary Microbiology 64, 2264-6.
57. Paterson R, Lima N, 2010. How will climate change affect mycotoxins in food? Food Research International 43, 1902-14.
58. Pattemore DE, Goodwin RM, McBrydie HM, Hoyte SM, Vanneste JL, 2014. Evidence of the role of honey bees (Apis mellifera) as vectors of the bacterial plant pathogen Pseudomonas syringae. Australasian Plant Pathology 43, 571-5.
59. Persson P, 1991. Soft rot Erwinia species attacking potatoes in Sweden. Uppsala, Sweden: Swedish University of Agricultural Sciences: Plant Protection Reports and Dissertations, 20.
60. Riffaud CMH, Morris CE, 2002. Detection of Pseudomonas syringae pv. aptata in irrigation water retention basins by immunofluorescence colony-staining. European Journal of Plant Pathology 108, 539-45.
61. Roozen NJM, 1990. Besmetting van Erwinia-vrij Pootgoed Vanuit Divese Bronnen. Een Literatuuroverzicht. Lelystad, Netherlands: PAGV.
62. Schuster ML, Wagner LJ, 1972. Control of bacterial canker and root knot of hydroponic tomatoes. Plant Disease Reporter 56, 139-40.
63. Scortichini M, Marcelletti S, Ferrante P, Petriccione M, Firrao G, 2012. Pseudomonas syringae pv. actinidiae: a re-emerging, multi-faceted, pandemic pathogen. Molecular Plant Pathology 13, 631-40.
64. Siebert S, Burke J, Faures JM et al., 2010. Groundwater use for irrigation - a global inventory. Hydrology and Earth System Sciences 14, 1863-80.
65. Singh D, Sinha S, Yadav DK, Chaudhary G, 2014. Detection of Ralstonia solanacearum from asymptomatic tomato plants, irrigation water, and soil through non-selective enrichment medium with hrp gene-based Bio-PCR. Current Microbiology 69, 127-34.
66. Stauffer F, Makristathis A, Hassl A, Nowotny S, Neudorfer W, 2001. Microbiological irrigation water quality of the Marchfeld canal system. International Journal of Hygiene and Environmental Health 203, 445-50.
67. Steadman JR, Maier CR, Schwartz HF, Kerr ED, 1975. Pollution of surface irrigation waters by plant pathogenic organisms. Journal of the American Water Resources Association 11, 796-804.
68. Stefani E, Giovanardi D, 2011. Dissemination of Pseudomonas syringae pv. actinidiae through pollen and its epiphytic life on leaves and fruits. Phytopathologia Mediterranea 50, 501-5.
69. Stokstad E, 2012. Dread citrus disease turns up in California, Texas. Science 336, 283-4.
70. Sueno WSK, Marrero G, de Silva AS, 2014. Diversity of Dickeya strains collected from pineapple plants and irrigation water in Hawaii. Plant Disease 98, 817-24.
71. Teoh TS, Chuo SK, 1978. The possible use of sodium hypochlorite for bacterial wilt control in the hydroponic cultivation of sweet pepper. Singapore Journal of Primary Industries 6, 102-12.
72. Thompson DL, 1965. Control of bacterial stalk rot of corn by chlorination of water in sprinkler irrigation. Crop Science 5, 369-70.
73. Torres JP, Maringoni AC, Silva TAF Jr, 2009. Survival of Xanthomonas axonopodis pv. phaseoli var. fuscans in common bean leaflets on soil. Journal of Plant Pathology 91, 195-8.
74. Toth IK, van der Wolf JM, Saddler G et al., 2011. Dickeya species: an emerging problem for potato production in Europe. Plant Pathology 60, 385-99.
75. Van Doorn J, Houtenbos R, Dees R, van der Wolf J, 2008. Overleving van Erwinia in water. Bloembollenvisie 10, 22-30.
76. Van Vaerenbergh J, Jamart G, Kamoen O, 1985. Epidemiology of Corynebacterium michiganense in NFT tomato. Medical Faculty Landbouww University of Gent 50, 997-1013.
77. Van Vuurde JWL, de Vries PM, 1992. Detectie van Pathogene Erwinia spp. van Aardappel in Oppervlaktewater in de Periode 1988-1991. Wageningen, Netherlands: IPO-DLO: IPO-DLO report no. 92-01.
78. Venturi V, da Silva DP, 2012. Incoming pathogens team up with harmless 'resident' bacteria. Trends in Microbiology 20, 160-4.
79. Wenneker M, Verdel MSW, Groeneveld RMW, Kempenaar C, Van Beuningen AR, Janse JD, 1999. Ralstonia (Pseudomonas) solanacearum race 3 (biovar 2) in surface water and natural weed hosts: First report on stinging nettle (Urtica dioica). European Journal of Plant Pathology 105, 307-15.
80. Wohanka W, 1995. Disinfection of recirculating nutrient solution by slow sand filtration. 4th International Symposium on Soil and Substrate Infestation and Disinfestation. Acta Horticulurae 382, 246-55.
81. Xu HS, Roberts N, Singleton FL, Attwell RW, Grimes DJ, Colwell RR, 1982. Survival and viability of nonculturable Escherichia coli and Vibrio cholerae in the estuarine and marine environment. Microbial Ecology 8, 313-23.
82. Zappia RE, Huberli D, Hardy GEStJ, Bayliss KL, 2014. Fungi and oomycetes in open irrigation systems: knowledge gaps and biosecurity implications. Plant Pathology 63, 961-72.