메뉴 건너뛰기




Volumn 6, Issue MAY, 2015, Pages 1-12

Profiling the expression domains of a rice-specific microRNA under stress

Author keywords

Expression patterns; MicroRNA; Panicles; Rice; Salt stress

Indexed keywords

OSA; PUSA;

EID: 84934875931     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.00333     Document Type: Article
Times cited : (53)

References (65)
  • 1
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and microRNA targets identified by sequencing of the Arabidopsis degradome
    • Addo-Quaye, C., Eshoo, T. W., Bartel, D. P., and Axtell, M. J. (2008). Endogenous siRNA and microRNA targets identified by sequencing of the Arabidopsis degradome. Curr. Biol. 18, 758-762. doi: 10. 1016/j. cub. 2008. 04. 042.
    • (2008) Curr. Biol , vol.18 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.W.2    Bartel, D.P.3    Axtell, M.J.4
  • 2
    • 17444430392 scopus 로고    scopus 로고
    • microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen, E., Xie, Z., Gustafson, A. M., and Carrington, J. C. (2005). microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121, 207-221. doi: 10. 1016/j. cell. 2005. 04. 004.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 3
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    • Allen, E., Xie, Z., Gustafson, A. M., Sung, G.-H., Spatafora, J. W., and Carrington, J. C. (2004). Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet. 36, 1282-1290. doi: 10. 1038/ng1478.
    • (2004) Nat. Genet , vol.36 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.-H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 5
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
    • Aukerman, M. J., and Sakai, H. (2003). Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15, 2730-2741. doi: 10. 1105/tpc. 016238.
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 6
    • 33745960196 scopus 로고    scopus 로고
    • PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
    • Bari, R., Datt Pant, B., Stitt, M., and Scheible, W.-R. (2006). PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141, 988-999. doi: 10. 1104/pp. 106. 079707.
    • (2006) Plant Physiol , vol.141 , pp. 988-999
    • Bari, R.1    Datt Pant, B.2    Stitt, M.3    Scheible, W.-R.4
  • 8
    • 0037046810 scopus 로고    scopus 로고
    • Role of the Arabidopsis DRM methyltransferases in de novoDNA methylation and gene silencing
    • Cao, X., and Jacobsen, S. E. (2002). Role of the Arabidopsis DRM methyltransferases in de novoDNA methylation and gene silencing. Curr. Biol. 12, 1138-1144. doi: 10. 1016/S0960-9822(02)00925-9.
    • (2002) Curr. Biol , vol.12 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 9
    • 17744364327 scopus 로고    scopus 로고
    • Gardening the genome: DNA methylation in Arabidopsis thaliana
    • Chan, S. W. L., Henderson, I. R., and Jacobsen, S. E. (2005). Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6, 351-360. doi: 10. 1038/nrg1601.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 351-360
    • Chan, S.W.L.1    Henderson, I.R.2    Jacobsen, S.E.3
  • 10
    • 33745270651 scopus 로고    scopus 로고
    • Regulation of phosphate homeostasis by microRNA in Arabidopsis
    • Chiou, T.-J., Aung, K., Lin, S.-I., Wu, C.-C., Chiang, S.-F., and Su, C.-L. (2006). Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 18, 412-421. doi: 10. 1105/tpc. 105. 038943.
    • (2006) Plant Cell , vol.18 , pp. 412-421
    • Chiou, T.-J.1    Aung, K.2    Lin, S.-I.3    Wu, C.-C.4    Chiang, S.-F.5    Su, C.-L.6
  • 11
    • 79953086307 scopus 로고    scopus 로고
    • Evolution and functional diversification of MIRNA genes
    • Cuperus, J. T., Fahlgren, N., and Carrington, J. C. (2011). Evolution and functional diversification of MIRNA genes. Plant Cell 23, 431-442. doi: 10. 1105/tpc. 110. 082784.
    • (2011) Plant Cell , vol.23 , pp. 431-442
    • Cuperus, J.T.1    Fahlgren, N.2    Carrington, J.C.3
  • 12
    • 79959967431 scopus 로고    scopus 로고
    • psRNATarget: A plant small RNA target analysis server
    • Dai, X., and Zhao, P. X. (2011). psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res. 39, W155-W159. doi: 10. 1093/nar/gkr319.
    • (2011) Nucleic Acids Res , vol.39 , pp. W155-W159
    • Dai, X.1    Zhao, P.X.2
  • 13
    • 84867135634 scopus 로고    scopus 로고
    • Variations in carbohydrate and protein accumulation among spikelets at different positions within a panicle during rice grain filling
    • Dong, M. H., Chen, P. F., Xie, Y. L., Qiao, Z. Y., and Yang, J. C. (2012). Variations in carbohydrate and protein accumulation among spikelets at different positions within a panicle during rice grain filling. Rice Sci. 19, 223-232. doi: 10. 1016/S1672-6308(12)60044-4.
    • (2012) Rice Sci , vol.19 , pp. 223-232
    • Dong, M.H.1    Chen, P.F.2    Xie, Y.L.3    Qiao, Z.Y.4    Yang, J.C.5
  • 14
    • 84875066243 scopus 로고    scopus 로고
    • Identification and dynamic regulation of microRNAs involved in salt stress responses in functional soybean nodules by high-throughput sequencing
    • Dong, Z., Shi, L., Wang, Y., Chen, L., Cai, Z., Wang, Y., et al. (2013). Identification and dynamic regulation of microRNAs involved in salt stress responses in functional soybean nodules by high-throughput sequencing. Int. J. Mol. Sci. 14, 2717-2738. doi: 10. 3390/ijms14022717.
    • (2013) Int. J. Mol. Sci , vol.14 , pp. 2717-2738
    • Dong, Z.1    Shi, L.2    Wang, Y.3    Chen, L.4    Cai, Z.5    Wang, Y.6
  • 15
    • 77953214518 scopus 로고    scopus 로고
    • MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    • Fahlgren, N., Jogdeo, S., Kasschau, K. D., Sullivan, C. M., Chapman, E. J., Laubinger, S., et al. (2010). MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell 22, 1074-1089. doi: 10. 1105/tpc. 110. 073999.
    • (2010) Plant Cell , vol.22 , pp. 1074-1089
    • Fahlgren, N.1    Jogdeo, S.2    Kasschau, K.D.3    Sullivan, C.M.4    Chapman, E.J.5    Laubinger, S.6
  • 16
    • 27844526222 scopus 로고    scopus 로고
    • A miRNA involved in phosphate-starvation response in Arabidopsis
    • Fujii, H., Chiou, T.-J., Lin, S.-I., Aung, K., and Zhu, J.-K. (2005). A miRNA involved in phosphate-starvation response in Arabidopsis. Curr. Biol. 15, 2038-2043. doi: 10. 1016/j. cub. 2005. 10. 016.
    • (2005) Curr. Biol , vol.15 , pp. 2038-2043
    • Fujii, H.1    Chiou, T.-J.2    Lin, S.-I.3    Aung, K.4    Zhu, J.-K.5
  • 17
    • 77950531313 scopus 로고    scopus 로고
    • Over-expression of osa-MIR396c decreases salt and alkali stress tolerance
    • Gao, P., Bai, X., Yang, L., Lv, D., Li, Y., Cai, H., et al. (2010). Over-expression of osa-MIR396c decreases salt and alkali stress tolerance. Planta 231, 991-1001. doi: 10. 1007/s00425-010-1104-2.
    • (2010) Planta , vol.231 , pp. 991-1001
    • Gao, P.1    Bai, X.2    Yang, L.3    Lv, D.4    Li, Y.5    Cai, H.6
  • 18
    • 78651082291 scopus 로고    scopus 로고
    • osa-MIR393: A salinity-and alkaline stress-related microRNA gene
    • Gao, P., Bai, X., Yang, L., Lv, D., Pan, X., Li, Y., et al. (2011). osa-MIR393: a salinity-and alkaline stress-related microRNA gene. Mol. Biol. Rep. 38, 237-242. doi: 10. 1007/s11033-010-0100-8.
    • (2011) Mol. Biol. Rep , vol.38 , pp. 237-242
    • Gao, P.1    Bai, X.2    Yang, L.3    Lv, D.4    Pan, X.5    Li, Y.6
  • 19
    • 84909965070 scopus 로고    scopus 로고
    • Functional interactome of Aquaporin 1 sub-family reveals new physiological functions in Arabidopsis thaliana
    • Gawwad, M. R. A., Šutković, J., Mataković, L., Musrati, M., and Zhang, L. (2013). Functional interactome of Aquaporin 1 sub-family reveals new physiological functions in Arabidopsis thaliana. Netw. Biol. 3, 87-96.
    • (2013) Netw. Biol , vol.3 , pp. 87-96
    • Gawwad, M.R.A.1    Šutković, J.2    Mataković, L.3    Musrati, M.4    Zhang, L.5
  • 20
    • 61349171237 scopus 로고    scopus 로고
    • Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis
    • Jagadeeswaran, G., Saini, A., and Sunkar, R. (2009). Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta 229, 1009-1014. doi: 10. 1007/s00425-009-0889-3.
    • (2009) Planta , vol.229 , pp. 1009-1014
    • Jagadeeswaran, G.1    Saini, A.2    Sunkar, R.3
  • 21
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades, M. W., and Bartel, D. P. (2004). Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 14, 787-799. doi: 10. 1016/j. molcel. 2004. 05. 027.
    • (2004) Mol. Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 22
    • 84903907761 scopus 로고    scopus 로고
    • Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database
    • Khan, Y., Yadav, A., Suresh, V. B., Muthamilarasan, M., Yadav, C. B., and Prasad, M. (2014). Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database. Plant Cell Tissue and Organ Cult. 118, 279-292. doi: 10. 1007/s11240-014-0480-x.
    • (2014) Plant Cell Tissue and Organ Cult , vol.118 , pp. 279-292
    • Khan, Y.1    Yadav, A.2    Suresh, V.B.3    Muthamilarasan, M.4    Yadav, C.B.5    Prasad, M.6
  • 23
    • 84856594225 scopus 로고    scopus 로고
    • Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
    • Khraiwesh, B., Zhu, J.-K., and Zhu, J. (2012). Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim. Biophys. Acta 1819, 137-148. doi: 10. 1016/j. bbagrm. 2011. 05. 001.
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 137-148
    • Khraiwesh, B.1    Zhu, J.-K.2    Zhu, J.3
  • 24
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: Annotating high confidence microRNAs using deep sequencing data
    • Kozomara, A., and Griffiths-Jones, S. (2014). miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42, D68-D73. doi: 10. 1093/nar/gkt1181.
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 25
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25. doi: 10. 1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 26
    • 0031766442 scopus 로고    scopus 로고
    • Genetic dissection of the source-sink relationship affecting fecundity and yield in rice (shape Oryza sativa L.)
    • Li, Z., Pinson, S. M., Stansel, J., and Paterson, A. (1998). Genetic dissection of the source-sink relationship affecting fecundity and yield in rice (shape Oryza sativa L.). Mol. Breed. 4, 419-426. doi: 10. 1023/a: 1009608128785.
    • (1998) Mol. Breed , vol.4 , pp. 419-426
    • Li, Z.1    Pinson, S.M.2    Stansel, J.3    Paterson, A.4
  • 27
    • 42449109504 scopus 로고    scopus 로고
    • Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
    • Liu, H. H., Tian, X., Li, Y. J., Wu, C. A., and Zheng, C. C. (2008). Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14, 836-843. doi: 10. 1261/rna. 895308.
    • (2008) RNA , vol.14 , pp. 836-843
    • Liu, H.H.1    Tian, X.2    Li, Y.J.3    Wu, C.A.4    Zheng, C.C.5
  • 28
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
    • Llave, C., Xie, Z., Kasschau, K. D., and Carrington, J. C. (2002). Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297, 2053-2056. doi: 10. 1126/science. 1076311.
    • (2002) Science , vol.297 , pp. 2053-2056
    • Llave, C.1    Xie, Z.2    Kasschau, K.D.3    Carrington, J.C.4
  • 29
    • 47249095055 scopus 로고    scopus 로고
    • Stress-responsive microRNAs in Populus
    • Lu, S., Sun, Y. H., and Chiang, V. L. (2008). Stress-responsive microRNAs in Populus. Plant J. 55, 131-151. doi: 10. 1111/j. 1365-313X. 2008. 03497. x.
    • (2008) Plant J , vol.55 , pp. 131-151
    • Lu, S.1    Sun, Y.H.2    Chiang, V.L.3
  • 30
    • 33748288105 scopus 로고    scopus 로고
    • Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    • Luo, Y.-C., Zhou, H., Li, Y., Chen, J.-Y., Yang, J.-H., Chen, Y.-Q., et al. (2006). Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development. FEBS Lett. 580, 5111-5116. doi: 10. 1016/j. febslet. 2006. 08. 046.
    • (2006) FEBS Lett , vol.580 , pp. 5111-5116
    • Luo, Y.-C.1    Zhou, H.2    Li, Y.3    Chen, J.-Y.4    Yang, J.-H.5    Chen, Y.-Q.6
  • 31
    • 0029189113 scopus 로고
    • Changes in plant response to NaCl during development of rice (Oryza sativa L.) varieties differing in salinity resistance
    • Lutts, S., Kinet, J. M., and Bouharmont, J. (1995). Changes in plant response to NaCl during development of rice (Oryza sativa L.) varieties differing in salinity resistance. J. Exp. Bot. 46, 1843-1852. doi: 10. 1093/jxb/46. 12. 1843.
    • (1995) J. Exp. Bot , vol.46 , pp. 1843-1852
    • Lutts, S.1    Kinet, J.M.2    Bouharmont, J.3
  • 32
    • 4143128922 scopus 로고    scopus 로고
    • Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome
    • Marmagne, A., Rouet, M.-A., Ferro, M., Rolland, N., Alcon, C., Joyard, J., et al. (2004). Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Mol. Cell. Proteomics 3, 675-691. doi: 10. 1074/mcp. M400001-MCP200.
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 675-691
    • Marmagne, A.1    Rouet, M.-A.2    Ferro, M.3    Rolland, N.4    Alcon, C.5    Joyard, J.6
  • 33
    • 84881385457 scopus 로고    scopus 로고
    • Identification of tissue-preferential expression patterns of rice miRNAs
    • Mittal, D., Mukherjee, S. K., Vasudevan, M., and Mishra, N. S. (2013). Identification of tissue-preferential expression patterns of rice miRNAs. J. Cell. Biochem. 114, 2071-2081. doi: 10. 1002/jcb. 24552.
    • (2013) J. Cell. Biochem , vol.114 , pp. 2071-2081
    • Mittal, D.1    Mukherjee, S.K.2    Vasudevan, M.3    Mishra, N.S.4
  • 34
    • 10844245732 scopus 로고    scopus 로고
    • Rice growth and development
    • eds N.A. Slaton, L.B. Ford, J.L. Bernhardt, R.D. Cartwright, D. Gardisser, J. Gibbons, et al. (Lawrence: Cooperative Extension Service, Division of Agriculture, University of Arkansas)
    • Moldenhauer, K., and Slaton, N. (2001). "Rice growth and development, " in Rice Production Handbook, eds N. A. Slaton, L. B. Ford, J. L. Bernhardt, R. D. Cartwright, D. Gardisser, J. Gibbons, et al. (Lawrence: Cooperative Extension Service, Division of Agriculture, University of Arkansas), 7-14.
    • (2001) Rice Production Handbook , pp. 7-14
    • Moldenhauer, K.1    Slaton, N.2
  • 35
    • 18744379315 scopus 로고    scopus 로고
    • Salinity tolerance of rice during reproductive development and association with tolerance at the seedling stage
    • Moradi, F., Ismail, A., Egdane, J., and Gregorio, G. (2003). Salinity tolerance of rice during reproductive development and association with tolerance at the seedling stage. Indian J. Plant Physiol. 8, 276-287.
    • (2003) Indian J. Plant Physiol , vol.8 , pp. 276-287
    • Moradi, F.1    Ismail, A.2    Egdane, J.3    Gregorio, G.4
  • 36
    • 84875871482 scopus 로고    scopus 로고
    • Evolution of variety-specific regulatory schema for expression of osa-miR408 in indica rice varieties under drought stress
    • Mutum, R. D., Balyan, S. C., Kansal, S., Agarwal, P., Kumar, S., Kumar, M., et al. (2013). Evolution of variety-specific regulatory schema for expression of osa-miR408 in indica rice varieties under drought stress. FEBS J. 280, 1717-1730. doi: 10. 1111/febs. 12186.
    • (2013) FEBS J , vol.280 , pp. 1717-1730
    • Mutum, R.D.1    Balyan, S.C.2    Kansal, S.3    Agarwal, P.4    Kumar, S.5    Kumar, M.6
  • 37
    • 84881078001 scopus 로고    scopus 로고
    • The copy number of rice CACTA DNA transposons carrying MIR820 does not correlate with MIR820 expression
    • Nosaka, M., Ishiwata, A., Shimizu-Sato, S., Ono, A., Ishimoto, K., Noda, Y., et al. (2013a). The copy number of rice CACTA DNA transposons carrying MIR820 does not correlate with MIR820 expression. Plant Signal. Behav. 8, e25169. doi: 10. 4161/psb. 25169.
    • (2013) Plant Signal. Behav , vol.8
    • Nosaka, M.1    Ishiwata, A.2    Shimizu-Sato, S.3    Ono, A.4    Ishimoto, K.5    Noda, Y.6
  • 38
    • 84879997175 scopus 로고    scopus 로고
    • Expression of the rice microRNA miR820 is associated with epigenetic modifications at its own locus
    • Nosaka, M., Ono, A., Ishiwata, A., Shimizu-Sato, S., Ishimoto, K., Noda, Y., et al. (2013b). Expression of the rice microRNA miR820 is associated with epigenetic modifications at its own locus. Genes Genet. Syst. 88, 105-112. doi: 10. 1266/ggs. 88. 105.
    • (2013) Genes Genet. Syst , vol.88 , pp. 105-112
    • Nosaka, M.1    Ono, A.2    Ishiwata, A.3    Shimizu-Sato, S.4    Ishimoto, K.5    Noda, Y.6
  • 39
    • 13744249762 scopus 로고    scopus 로고
    • NAC transcription factors: Structurally distinct, functionally diverse
    • Olsen, A. N., Ernst, H. A., Leggio, L. L., and Skriver, K. (2005). NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10, 79-87. doi: 10. 1016/j. tplants. 2004. 12. 010.
    • (2005) Trends Plant Sci , vol.10 , pp. 79-87
    • Olsen, A.N.1    Ernst, H.A.2    Leggio, L.L.3    Skriver, K.4
  • 40
    • 33846101405 scopus 로고    scopus 로고
    • The TIGR rice genome annotation resource: Improvements and new features
    • Ouyang, S., Zhu, W., Hamilton, J., Lin, H., Campbell, M., Childs, K., et al. (2007). The TIGR rice genome annotation resource: improvements and new features. Nucleic Acids Res. 35, D883-D887. doi: 10. 1093/nar/gkl976.
    • (2007) Nucleic Acids Res , vol.35 , pp. D883-D887
    • Ouyang, S.1    Zhu, W.2    Hamilton, J.3    Lin, H.4    Campbell, M.5    Childs, K.6
  • 41
    • 84899708631 scopus 로고    scopus 로고
    • A comprehensive genome-wide study on tissue-specific and abiotic stress-specific miRNAs in Triticum aestivum
    • Pandey, R., Joshi, G., Bhardwaj, A. R., Agarwal, M., and Katiyar-Agarwal, S. (2014). A comprehensive genome-wide study on tissue-specific and abiotic stress-specific miRNAs in Triticum aestivum. PLoS ONE 9: e95800. doi: 10. 1371/journal. pone. 0095800.
    • (2014) PLoS ONE , vol.9
    • Pandey, R.1    Joshi, G.2    Bhardwaj, A.R.3    Agarwal, M.4    Katiyar-Agarwal, S.5
  • 42
    • 80054096606 scopus 로고    scopus 로고
    • Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
    • Peng, T., Lv, Q., Zhang, J., Li, J., Du, Y., and Zhao, Q. (2011). Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa). J. Exp. Bot. 62, 4943-4954. doi: 10. 1093/jxb/err205.
    • (2011) J. Exp. Bot , vol.62 , pp. 4943-4954
    • Peng, T.1    Lv, Q.2    Zhang, J.3    Li, J.4    Du, Y.5    Zhao, Q.6
  • 43
    • 84902341239 scopus 로고    scopus 로고
    • DRM1 and DRM2 expression regulation: Potential role of splice variants in response to stress and environmental factors in Arabidopsis
    • Rae, G. M., Uversky, V. N., David, K., and Wood, M. (2014). DRM1 and DRM2 expression regulation: potential role of splice variants in response to stress and environmental factors in Arabidopsis. Mol. Genet. Genomics 289, 317-332. doi: 10. 1007/s00438-013-0804-2.
    • (2014) Mol. Genet. Genomics , vol.289 , pp. 317-332
    • Rae, G.M.1    Uversky, V.N.2    David, K.3    Wood, M.4
  • 45
    • 84883167952 scopus 로고    scopus 로고
    • Biogenesis, turnover, and mode of action of plant microRNAs
    • Rogers, K., and Chen, X. (2013). Biogenesis, turnover, and mode of action of plant microRNAs. Plant Cell 25, 2383-2399. doi: 10. 1105/tpc. 113. 113159.
    • (2013) Plant Cell , vol.25 , pp. 2383-2399
    • Rogers, K.1    Chen, X.2
  • 46
    • 70349556320 scopus 로고    scopus 로고
    • Regulation and functional specialization of small RNA-target nodes during plant development
    • Rubio-Somoza, I., Cuperus, J. T., Weigel, D., and Carrington, J. C. (2009). Regulation and functional specialization of small RNA-target nodes during plant development. Curr. Opin. Plant Biol. 12, 622-627. doi: 10. 1016/j. pbi. 2009. 07. 003.
    • (2009) Curr. Opin. Plant Biol , vol.12 , pp. 622-627
    • Rubio-Somoza, I.1    Cuperus, J.T.2    Weigel, D.3    Carrington, J.C.4
  • 47
    • 84880512830 scopus 로고    scopus 로고
    • Epigenetic mechanisms of plant stress responses and adaptation
    • Sahu, P., Pandey, G., Sharma, N., Puranik, S., Muthamilarasan, M., and Prasad, M. (2013). Epigenetic mechanisms of plant stress responses and adaptation. Plant Cell Rep. 32, 1151-1159. doi: 10. 1007/s00299-013-1462-x.
    • (2013) Plant Cell Rep , vol.32 , pp. 1151-1159
    • Sahu, P.1    Pandey, G.2    Sharma, N.3    Puranik, S.4    Muthamilarasan, M.5    Prasad, M.6
  • 48
    • 72849129956 scopus 로고    scopus 로고
    • Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
    • Sanan-Mishra, N., Kumar, V., Sopory, S. K., and Mukherjee, S. K. (2009). Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses. Mol. Genet. Genomics 282, 463-474. doi: 10. 1007/s00438-009-0478-y.
    • (2009) Mol. Genet. Genomics , vol.282 , pp. 463-474
    • Sanan-Mishra, N.1    Kumar, V.2    Sopory, S.K.3    Mukherjee, S.K.4
  • 49
    • 84861075495 scopus 로고    scopus 로고
    • DNA methylation in plants: Relationship to small RNAs and histone modifications, and functions in transposon inactivation
    • Saze, H., Tsugane, K., Kanno, T., and Nishimura, T. (2012). DNA methylation in plants: relationship to small RNAs and histone modifications, and functions in transposon inactivation. Plant Cell Physiol. 53, 766-784. doi: 10. 1093/pcp/pcs008.
    • (2012) Plant Cell Physiol , vol.53 , pp. 766-784
    • Saze, H.1    Tsugane, K.2    Kanno, T.3    Nishimura, T.4
  • 50
    • 84919920992 scopus 로고    scopus 로고
    • Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice
    • Sharma, D., Tiwari, M., Lakhwani, D., Tripathi, R. D., and Trivedi, P. K. (2015). Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice. Metallomics 7, 174-187. doi: 10. 1039/c4mt00264d.
    • (2015) Metallomics , vol.7 , pp. 174-187
    • Sharma, D.1    Tiwari, M.2    Lakhwani, D.3    Tripathi, R.D.4    Trivedi, P.K.5
  • 51
    • 41049106186 scopus 로고    scopus 로고
    • Enhancing salt tolerance in a crop plant by overexpression of glyoxalase II
    • Singla-Pareek, S., Yadav, S., Pareek, A., Reddy, M. K., and Sopory, S. K. (2008). Enhancing salt tolerance in a crop plant by overexpression of glyoxalase II. Transgenic Res. 17, 171-180. doi: 10. 1007/s11248-007-9082-2.
    • (2008) Transgenic Res , vol.17 , pp. 171-180
    • Singla-Pareek, S.1    Yadav, S.2    Pareek, A.3    Reddy, M.K.4    Sopory, S.K.5
  • 52
    • 84893716683 scopus 로고    scopus 로고
    • Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
    • Stroud, H., Do, T., Du, J., Zhong, X., Feng, S., Johnson, L., et al. (2014). Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat. Struct. Mol. Biol. 21, 64-72. doi: 10. 1038/nsmb. 2735.
    • (2014) Nat. Struct. Mol. Biol , vol.21 , pp. 64-72
    • Stroud, H.1    Do, T.2    Du, J.3    Zhong, X.4    Feng, S.5    Johnson, L.6
  • 53
    • 34347263491 scopus 로고    scopus 로고
    • Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
    • Sunkar, R., Chinnusamy, V., Zhu, J., and Zhu, J. K. (2007). Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci. 12, 301-309. doi: 10. 1016/j. tplants. 2007. 05. 001.
    • (2007) Trends Plant Sci , vol.12 , pp. 301-309
    • Sunkar, R.1    Chinnusamy, V.2    Zhu, J.3    Zhu, J.K.4
  • 54
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: A highly sensitive RT-PCR method for detection and quantification of microRNAs
    • Varkonyi-Gasic, E., Wu, R., Wood, M., Walton, E. F., and Hellens, R. P. (2007). Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 3, 12-12. doi: 10. 1186/1746-4811-3-12.
    • (2007) Plant Methods , vol.3
    • Varkonyi-Gasic, E.1    Wu, R.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5
  • 55
    • 56649102410 scopus 로고    scopus 로고
    • Evolution of Arabidopsis MIR genes generates novel microRNA classes
    • Vazquez, F., Blevins, T., Ailhas, J., Boller, T., and Meins, F. (2008). Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res. 36, 6429-6438. doi: 10. 1093/nar/gkn670.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6429-6438
    • Vazquez, F.1    Blevins, T.2    Ailhas, J.3    Boller, T.4    Meins, F.5
  • 56
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet, O. (2009). Origin, biogenesis, and activity of plant microRNAs. Cell 136, 669-687. doi: 10. 1016/j. cell. 2009. 01. 046.
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 57
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTLs
    • Voorrips, R. E. (2002). MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93, 77-78. doi: 10. 1093/jhered/93. 1. 77.
    • (2002) J. Hered , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 58
    • 77149143214 scopus 로고    scopus 로고
    • Small RNAs in flower development
    • Wollmann, H., and Weigel, D. (2010). Small RNAs in flower development. Eur. J. Cell Biol. 89, 250-257. doi: 10. 1016/j. ejcb. 2009. 11. 004.
    • (2010) Eur. J. Cell Biol , vol.89 , pp. 250-257
    • Wollmann, H.1    Weigel, D.2
  • 59
    • 77951974552 scopus 로고    scopus 로고
    • DNA methylation mediated by a microRNA pathway
    • Wu, L., Zhou, H., Zhang, Q., Zhang, J., Ni, F., Liu, C., et al. (2010). DNA methylation mediated by a microRNA pathway. Mol. Cell 38, 465-475. doi: 10. 1016/j. molcel. 2010. 03. 008.
    • (2010) Mol. Cell , vol.38 , pp. 465-475
    • Wu, L.1    Zhou, H.2    Zhang, Q.3    Zhang, J.4    Ni, F.5    Liu, C.6
  • 60
    • 0033743939 scopus 로고    scopus 로고
    • Salinity tolerant performance and genetic diversity of four rice varieties
    • Xie, J., Zapata-Arias, F., Shen, M., and Afza, R. (2000). Salinity tolerant performance and genetic diversity of four rice varieties. Euphytica 116, 105-110. doi: 10. 1023/A: 1004041900101.
    • (2000) Euphytica , vol.116 , pp. 105-110
    • Xie, J.1    Zapata-Arias, F.2    Shen, M.3    Afza, R.4
  • 61
    • 78651307694 scopus 로고    scopus 로고
    • starBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
    • Yang, J.-H., Li, J.-H., Shao, P., Zhou, H., Chen, Y.-Q., and Qu, L.-H. (2011). starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res. 39, D202-D209. doi: 10. 1093/nar/gkq1056.
    • (2011) Nucleic Acids Res , vol.39 , pp. D202-D209
    • Yang, J.-H.1    Li, J.-H.2    Shao, P.3    Zhou, H.4    Chen, Y.-Q.5    Qu, L.-H.6
  • 62
    • 0033841595 scopus 로고    scopus 로고
    • Salinity effects on seedling growth and yield components of rice
    • Zeng, L., and Shannon, M. C. (2000). Salinity effects on seedling growth and yield components of rice. Crop Sci. 40, 996-1003. doi: 10. 2135/cropsci2000. 404996x.
    • (2000) Crop Sci , vol.40 , pp. 996-1003
    • Zeng, L.1    Shannon, M.C.2
  • 63
    • 80052930265 scopus 로고    scopus 로고
    • Cytological analysis and genetic control of rice anther development
    • Zhang, D., Luo, X., and Zhu, L. (2011). Cytological analysis and genetic control of rice anther development. J. Genet. Genomics 38, 379-390. doi: 10. 1016/j. jgg. 2011. 08. 001.
    • (2011) J. Genet. Genomics , vol.38 , pp. 379-390
    • Zhang, D.1    Luo, X.2    Zhu, L.3
  • 64
    • 9144231248 scopus 로고    scopus 로고
    • BGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics
    • Zhao, W., Wang, J., He, X., Huang, X., Jiao, Y., Dai, M., et al. (2004). BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 32, D377-D382. doi: 10. 1093/nar/gkh085.
    • (2004) Nucleic Acids Res , vol.32 , pp. D377-D382
    • Zhao, W.1    Wang, J.2    He, X.3    Huang, X.4    Jiao, Y.5    Dai, M.6
  • 65
    • 50649110065 scopus 로고    scopus 로고
    • A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    • Zhu, Q.-H., Spriggs, A., Matthew, L., Fan, L., Kennedy, G., Gubler, F., et al. (2008). A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res. 18, 1456-1465. doi: 10. 1101/gr. 075572. 107.
    • (2008) Genome Res , vol.18 , pp. 1456-1465
    • Zhu, Q.-H.1    Spriggs, A.2    Matthew, L.3    Fan, L.4    Kennedy, G.5    Gubler, F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.