Functional interactome of aquaporin 1 sub-family reveals new physiological functions in Arabidopsis thaliana

Network Biology

Volumn 3, Issue 3, 2013, Pages 87-96

  Gawwad, Mohamed Ragab Abdel ^a   Šutkovic, Jasmin ^a   Mataković, Lavinija ^b   Musrati, Mohamed ^a   Zhang, Lizhi ^c  

^a INTERNATIONAL UNIVERSITY OF SARAJEVO   (Bosnia and Herzegovina)

^b University of Josip Jurja Strossmayer   (Croatia)

^c OHIO STATE UNIVERSITY   (United States)

Author keywords

3 D structure; Aquaporins; Arabidopsis thaliana; Interactome

Indexed keywords

EID: 84909965070     PISSN: None     EISSN: 22208879     Source Type: Journal    
DOI: 10.0000/issn-2220-8879-networkbiology-2013-v3-00008     Document Type: Article

References (30)

1. Braun P, Carvunis AR, Charloteaux B, et al. 2011. Evidence for network evolution in an Arabidopsis interactome map. Science, 333(6042): 601-607.
2. Dortay H, Gruhn N, Pfeifer A, et al. 2008. Toward an interaction map of the two-component signalling pathway of Arabidopsis thaliana. Journal of Proteome Research, 7(9): 3649-3660.
3. Chaumont F, Moshelion M, Mark J. 2000. Daniels. Regulation of plant aquaporin activity. Franois Bilogy Cells, 97(10): 749-764.
4. Hohmann I, Bill RM, Kayingo I, et al. 2000. Microbial MIP channels. Trends in Microbiology, 8: 33-38.
5. Horton P, Park KJ, Obayashi T, et al. 2007. WoLF PSORT: Protein Localization Predictor. Nucleic Acids Research, 35: W585-W587.
6. Franceschini A, Szklarczyk D, et al. 2013. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Research, 41(Database issue): D808-D815.
7. Fraysse LC, Wells B, McCann MC, et al. 2005. Specific plasma membrane aquaporins of the PIP1 subfamily are expressed in sieve elements and guard cells. Biology of the Cell, 97(7): 519-534.
8. Ishikawa H, Uenishi Y, Takase T, et al. 2010. Involvement of phytochrome A in regulation of water dynamics and aquaporin expression in Arabidopsis roots. 21st International Conference on Arabidopsis Research.
9. Johanson U, Karlsson M, Johansson I, et al. 2001. The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants. Plant Physiology, 126: 1358-1369.
10. Kaldenhoff R, Bertl A, Otto B, et al. 2007. Characterization of plant aquaporins. Methods in Enzymology, 428: 505-531.
11. Kamiya T, Tanaka M, et al. 2009. NIP1;1, an aquaporin homolog, determines the arsenite sensitivity of Arabidopsis thaliana. Journal of Biological Chemistry, 284(4): 2114-2120.
12. Kuwagata T, Ishikawa-Sakurai J, Hayashi H, et al. 2012. Influence of low air humidity and low root temperature on water uptake, growth and aquaporin expression in rice plants. Plant and Cell Physiology, 53(8): 1418-1431.
13. Larkin MA, Blackshields G, Brown NP, et al. 2007. ClustalW and Clustal X version 2.0. Bioinformatics, 23(21): 2947-2948.
14. Li J, Zhang J, Wang X, et al. 2010 A membrane-tethered transcription factor ANAC089 negatively regulates floral initiation in Arabidopsis thaliana. Science China Life Sciences, 1299-1306.
15. Lamesch P, Berardini T.Z and Li D.2012.The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Research, 40: 1202-1210.
16. Letunic I, Doerks T, Bork P. 2012. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Research, 40(1): 302-305.
17. Maurel C, Verdoucq L, Luu DT, et al. 2008. Plant aquaporins: Membrane channels with multiple integrated functions. Annual Review of Plant Biology, 59: 595-624.
18. Muller DJ, Janovjak H, Lehto T, et al. 2002. Observing structure, function and assembly of single proteins by AFM. Progress in Biophysics & Molecular Biology, 79: 1-43.
19. Ping Li, Wind J, Shi XL, et al. 2011. Fructose sensitivity is suppressed in Arabidopsis by the transcription factor ANAC089 lacking the membrane-bound domain. Proceedings of the National Academy of Sciences of USA, 108: 3436-3441.
20. Qi Y, Katagiri F. 2009. Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components. Plant Journal, 57(5): 932-944.
21. Robinson BH, Brooks RR, Kirkman JH, et al. 1996. Plant-available elements in soils and their influence on the vegetation over ultramar (serpentine) rocks in New Zealand. Journal of the Royal Society of New Zealand, 26: 457-468.
22. Santoni V, Javot H, Lauvergeat V, et al. 2003. Role of a single aquaporin isoform in root water uptake. Plant Cell, 15: 509-522.
23. Sayers E W, Barrett T, Benson S H. 2009. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res, 37: 5-15.
24. Schwede T, Bordoli L, Kopp J, et al. 2006. The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling. Bioinformatics, 22: 195-201.
25. The PyMOL Molecular Graphics System, Version 1.5.0.4. Schrödinger, LLC.
26. Törnroth-Horsefield S, Wang Y, Hedfalk K, et al. 2005. Structural mechanism of plant aquaporin gating. Nature, 439(7077): 688-694.
27. Wang Y, Tajkhorshid E. 2007. Molecular mechanisms of conduction and selectivity in aquaporin water channels. Journal of Nutrition, 137: 1509-1515.
28. Yu J, Yool AJ, Schulten K, et al. 2006. Mechanism of gating and ion conductivity of a possible tetrameric pore in Aquaporin-1. Structure, 14: 1411-1423.
29. Zardoya R. and Villalba S. 2001. A phylogenetic framework for the aquaporin family in eukaryotes. Journal of Molecular Evolution, 52(5): 391-404.
30. Zelazny E, Borst JW, Muylaert M, et al. 2007. FRET imaging in living maize cells reveals that plasma membrane aquaporin interact to regulate their subcellular localization. Proceedings of the National Academy of Sciences of USA, 104: 12359-12364.