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Volumn 923, Issue , 2013, Pages 189-211

DNA microarray-based genome-wide analyses of plasmodium parasites

Author keywords

Comparative genomic hybridization; DNA microarray chip analyzed chromatin immunoprecipitation (ChIP on chip); Gene expression; Microarray hybridization; Plasmodium genomics; SMART PCR; Transcription profiling

Indexed keywords

GENOMIC DNA; OLIGONUCLEOTIDE;

EID: 84934443778     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-26-7_13     Document Type: Article
Times cited : (20)

References (29)
  • 1
    • 0036181430 scopus 로고    scopus 로고
    • DNA microarrays for malaria
    • Rathod PK et al (2002) DNA microarrays for malaria. Trends Parasitol 18:39-45
    • (2002) Trends Parasitol , vol.18 , pp. 39-45
    • Rathod, P.K.1
  • 2
    • 0037015614 scopus 로고    scopus 로고
    • Genome sequence of the human malaria parasite Plasmodium falciparum
    • Gardner MJ et al (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419:498-511
    • (2002) Nature , vol.419 , pp. 498-511
    • Gardner, M.J.1
  • 3
    • 0036749434 scopus 로고    scopus 로고
    • Monitoring the chromosome 2 intraerythrocytic transcriptome of Plasmodium falciparum using oligonucleotide arrays
    • Le Roch KG et al (2002) Monitoring the chromosome 2 intraerythrocytic transcriptome of Plasmodium falciparum using oligonucleotide arrays. Am J Trop Med Hyg 67:233-243
    • (2002) Am J Trop Med Hyg , vol.67 , pp. 233-243
    • Le Roch, K.G.1
  • 4
    • 1342303735 scopus 로고    scopus 로고
    • Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
    • Bozdech Z et al (2003) Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biol 4:R9
    • (2003) Genome Biol , vol.4
    • Bozdech, Z.1
  • 5
    • 4243071596 scopus 로고    scopus 로고
    • The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
    • Bozdech Z et al (2003) The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 1:E5
    • (2003) PLoS Biol , vol.1
    • Bozdech, Z.1
  • 6
    • 55849142984 scopus 로고    scopus 로고
    • The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites
    • Bozdech Z et al (2008) The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites. Proc Natl Acad Sci USA 105:16290-16295
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 16290-16295
    • Bozdech, Z.1
  • 7
    • 0141633042 scopus 로고    scopus 로고
    • Discovery of gene function by expression profiling of the malaria parasite life cycle
    • Le Roch KG et al (2003) Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 301:1503-1508
    • (2003) Science , vol.301 , pp. 1503-1508
    • Le Roch, K.G.1
  • 8
    • 22944459559 scopus 로고    scopus 로고
    • Genome-wide identification of genes upregulated at the onset of gametocytogenesis in Plasmodium falciparum
    • Silvestrini F et al (2005) Genome-wide identification of genes upregulated at the onset of gametocytogenesis in Plasmodium falciparum. Mol Biochem Parasitol 143:100-110
    • (2005) Mol Biochem Parasitol , vol.143 , pp. 100-110
    • Silvestrini, F.1
  • 9
    • 22844451398 scopus 로고    scopus 로고
    • The Plasmodium falciparum sexual development transcriptome: A microarray analysis using ontology-based pattern identification
    • Young JA et al (2005) The Plasmodium falciparum sexual development transcriptome: A microarray analysis using ontology-based pattern identification. Mol Biochem Parasitol 143:67-79
    • (2005) Mol Biochem Parasitol , vol.143 , pp. 67-79
    • Young, J.A.1
  • 10
    • 38349159563 scopus 로고    scopus 로고
    • A combined transcriptome and proteome survey of malaria parasite liver stages
    • Tarun AS et al (2008) A combined transcriptome and proteome survey of malaria parasite liver stages. Proc Natl Acad Sci USA 105: 305-310
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 305-310
    • Tarun, A.S.1
  • 11
    • 37249026903 scopus 로고    scopus 로고
    • Distinct physiological states of Plasmodium falciparum in malariainfected patients
    • Daily JP et al (2007) Distinct physiological states of Plasmodium falciparum in malariainfected patients. Nature 450:1091-1095
    • (2007) Nature , vol.450 , pp. 1091-1095
    • Daily, J.P.1
  • 12
    • 33644854445 scopus 로고    scopus 로고
    • Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
    • Llinas M et al (2006) Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Res 34:1166-1173
    • (2006) Nucleic Acids Res , vol.34 , pp. 1166-1173
    • Llinas, M.1
  • 13
    • 73649101765 scopus 로고    scopus 로고
    • Comparative transcriptional and genomic analysis of Plasmodium falciparum field isolates
    • Mackinnon MJ et al (2009) Comparative transcriptional and genomic analysis of Plasmodium falciparum field isolates. PLoS Pathog 5:e1000644
    • (2009) PLoS Pathog , vol.5
    • Mackinnon, M.J.1
  • 14
    • 79961008996 scopus 로고    scopus 로고
    • Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription
    • Mok S et al (2011) Artemisinin resistance in Plasmodium falciparum is associated with an altered temporal pattern of transcription. BMC Genomics 12:391
    • (2011) BMC Genomics , vol.12 , pp. 391
    • Mok, S.1
  • 15
    • 34547121721 scopus 로고    scopus 로고
    • Plasmodium falciparum : Genome wide perturbations in transcript pro fi les among mixed stage cultures after chloroquine treatment
    • Gunasekera AM et al (2007) Plasmodium falciparum : Genome wide perturbations in transcript pro fi les among mixed stage cultures after chloroquine treatment. Exp Parasitol 117:87-92
    • (2007) Exp Parasitol , vol.117 , pp. 87-92
    • Gunasekera, A.M.1
  • 16
    • 74049111230 scopus 로고    scopus 로고
    • Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum
    • Hu G et al (2009) Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum. Nat Biotechnol 28:91-98
    • (2009) Nat Biotechnol , vol.28 , pp. 91-98
    • Hu, G.1
  • 17
    • 52049121086 scopus 로고    scopus 로고
    • Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate
    • Natalang O et al (2008) Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate. BMC Genomics 9:388
    • (2008) BMC Genomics , vol.9 , pp. 388
    • Natalang, O.1
  • 18
    • 34147120638 scopus 로고    scopus 로고
    • Molecular factors and biochemical pathways induced by febrile temperature in intraerythrocytic Plasmodium falciparum parasites
    • Oakley MS et al (2007) Molecular factors and biochemical pathways induced by febrile temperature in intraerythrocytic Plasmodium falciparum parasites. Infect Immun 75:2012-2025
    • (2007) Infect Immun , vol.75 , pp. 2012-2025
    • Oakley, M.S.1
  • 19
    • 60649095351 scopus 로고    scopus 로고
    • Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites
    • Lopez-Rubio JJ et al (2009) Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites. Cell Host Microbe 5:179-190
    • (2009) Cell Host Microbe , vol.5 , pp. 179-190
    • Lopez-Rubio, J.J.1
  • 20
    • 67649849939 scopus 로고    scopus 로고
    • Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum
    • Salcedo-Amaya AM et al (2009) Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum. Proc Natl Acad Sci USA 106: 9655-9660
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9655-9660
    • Salcedo-Amaya, A.M.1
  • 21
    • 79953757647 scopus 로고    scopus 로고
    • An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations
    • Tan JC et al (2011) An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations. Genome Biol 12:R35
    • (2011) Genome Biol , vol.12
    • Tan, J.C.1
  • 22
    • 77649219343 scopus 로고    scopus 로고
    • Histone deacetylases play a major role in the transcriptional regulation of the Plasmodium falciparum life cycle
    • Chaal BK et al (2010) Histone deacetylases play a major role in the transcriptional regulation of the Plasmodium falciparum life cycle. PLoS Pathog 6:e1000737
    • (2010) PLoS Pathog , vol.6
    • Chaal, B.K.1
  • 23
    • 36849034573 scopus 로고    scopus 로고
    • Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
    • Hu G et al (2007) Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy. BMC Bioinformatics 8:350
    • (2007) BMC Bioinformatics , vol.8 , pp. 350
    • Hu, G.1
  • 24
    • 77649290642 scopus 로고    scopus 로고
    • Defining species specific genome differences in malaria parasites
    • Liew KJ et al (2010) Defining species specific genome differences in malaria parasites. BMC Genomics 11:128
    • (2010) BMC Genomics , vol.11 , pp. 128
    • Liew, K.J.1
  • 25
    • 0036081355 scopus 로고    scopus 로고
    • Gene expression omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R et al (2002) Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30:207-210
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1
  • 26
    • 0001447024 scopus 로고    scopus 로고
    • Generation and use of high-quality cDNA from small amounts of total RNA by SMART PCR
    • Siebert PD, Larrick JW (eds), Natick, MA
    • Chenchik A et al (1998) Generation and use of high-quality cDNA from small amounts of total RNA by SMART PCR. In: Siebert PD, Larrick JW (eds) Gene cloning and analysis by RT-PCR. BioTechniques Books, Natick, MA, pp 305-319
    • (1998) Gene Cloning and Analysis by RT-PCR. BioTechniques Books , pp. 305-319
    • Chenchik, A.1
  • 27
    • 0026761123 scopus 로고
    • A method for the rapid sequence-independent amplification of microdissected chromosomal material
    • Bohlander SK et al (1992) A method for the rapid sequence-independent amplification of microdissected chromosomal material. Genomics 13:1322-1324
    • (1992) Genomics , vol.13 , pp. 1322-1324
    • Bohlander, S.K.1
  • 28
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen MB, Brown PO (1999) DNA arrays for analysis of gene expression. Methods Enzymol 303:179-205
    • (1999) Methods Enzymol , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 29
    • 1842571774 scopus 로고    scopus 로고
    • Impact of surface chemistry and blocking strategies on DNA microarrays
    • Taylor S et al (2003) Impact of surface chemistry and blocking strategies on DNA microarrays. Nucleic Acids Res 31:e87
    • (2003) Nucleic Acids Res , vol.31
    • Taylor, S.1


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