DNA microarrays for malaria

Trends in Parasitology

Volumn 18, Issue 1, 2002, Pages 39-45

  Rathod, Pradipsinh K ^a   Ganesan, Karthikeyan ^a   Hayward, Rhian E ^b   Bozdech, Zbynek ^c   DeRisi, Joseph L ^c  

^a UNIVERSITY OF WASHINGTON   (United States)

^b NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROQUINE; DNA; MEFLOQUINE; PYRIMETHAMINE; RNA; SULFADOXINE;

CELL CYCLE; DNA DETERMINATION; DNA MICROARRAY; DRUG MECHANISM; EXPRESSED SEQUENCE TAG; GENE SEQUENCE; GENETIC TRANSCRIPTION; HUMAN; HYBRIDIZATION; MALARIA; MOLECULAR CLONING; NONHUMAN; PARASITE SURVIVAL; PARASITE VIRULENCE; PLASMODIUM FALCIPARUM; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; RNA ANALYSIS; SEQUENCE TAGGED SITE;

ANIMALS; DRUG RESISTANCE; GENE EXPRESSION PROFILING; HUMANS; LIFE CYCLE STAGES; MALARIA, FALCIPARUM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASMODIUM; VACCINATION;

PLASMODIUM FALCIPARUM; PROTOZOA;

EID: 0036181430     PISSN: 14714922     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1471-4922(01)02153-5     Document Type: Review

References (53)

1. Computational biology. Bioinformatics - Trying to swim in a sea of data
2. Genome projects, genetic analysis, and the changing landscape of malaria research
3. Functional analysis of drug resistance in Plasmodium falciparum in the post-genomic era
4. Serial analysis of gene expression (SAGE) in Plasmodium falciparum: Application of the technique to A-T rich genomes
5. Identification of differentially regulated genes of Plasmodium by suppression subtractive hybridization
6. Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum
7. Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis
8. Exploring the transcriptome of the malaria sporozoite stage
9. Exploring the new world of the genome with DNA microarrays
10. Genomics and array technology
11. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
12. Use of a cDNA microarray to analyse gene expression patterns in human cancer
13. Exploring the metabolic and genetic control of gene expression on a genomic scale
14. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
15. The transcriptional program of sporulation in budding yeast
16. The transcriptional program in the response of human fibroblasts to serum
17. Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays
18. Molecular portraits of human breast tumours
19. The lymphochip: A specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes
20. Delineation of prognostic biomarkers in prostate cancer
21. Genome-wide analysis of DNA copy-number changes using cDNA microarrays
22. Mung bean nuclease cleaves Plasmodium genomic DNA at sites before and after genes
23. Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum
24. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum
25. Gene synteny across Plasmodium spp: Could 'operon-like' structures exist?
26. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays
27. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
28. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
29. The complexity of radiation stress responses: Analysis by informatics and functional genomics approaches
30. Cluster analysis and display of genome-wide expression patterns
31. The development of genetic tools for dissecting the biology of malaria parasites
32. The Plasmodium vivax and P. berghei gene sequence tag projects
33. A reticulocyte-binding protein complex of Plasmodium vivax merozoites
34. A novel class of supercoil-independent nuclease hypersensitive site is comprised of alternative DNA structures that flank eukaryotic genes
35. The enzymes of the glycolytic pathway in erythrocytes infected with Plasmodium falciparum malaria parasites
36. Cloning and characterisation of a Plasmodium falciparum homologue of the Ran/TC4 signal transducing GTPase involved in cell cycle control
37. Expression of Plasmodium falciparum trimeric G proteins and their involvement in switching to sexual development
38. Differential transcription of histone genes in asexual and sexual stages of Plasmodium falciparum
39. Heterogeneous ribosome populations are present in Plasmodium berghei during development in its vector
40. Malaria cooperative silencing elements in var genes
41. Intra-cluster recombination and var transcription switches in the antigenic variation of Plasmodium falciparum
42. Genomic organization and chromatin structure of Plasmodium falciparum chromosome ends
43. Apicidin: A novel antiprotozoal agent that inhibits parasite histone deacetylase
44. Transformation of Plasmodium falciparum malaria parasites by homologous integration of plasmids that confer resistance to pyrimethamine
45. Variations in frequencies of drug resistance in Plasmodium falciparum
46. Mutations in the P. Falciparum digestive vacuole transmembrane protein PfCRT and evidence for their role in chloroquine resistance
47. A chloroquine resistance locus in the rodent malaria parasite Plasmodium chabaudi
48. A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum
49. Large-scale identification of secreted and membrane-associated gene products using DNA microarrays
50. Sequestration in Plasmodium falciparum malaria: Sticky cells and sticky problems
51. Variant proteins on the surface of malaria-infected erythrocytes-developing vaccines
52. Antigenic variation at the infected red cell surface in malaria
53. Gene expression in individual cells: Analysis using global single cell reverse transcription polymerase chain reaction (GSC RT-PCR)