Differential gene regulation in Yersinia pestis versus Yersinia pseudotuberculosis: Effects of hypoxia and potential role of a plasmid regulator

Advances in Experimental Medicine and Biology

Volumn 603, Issue , 2007, Pages 131-144

  Bai, Guangchun ^a   Pata, Janice ^a   McDonough, Kathleen A ^a   Golubov, Andrey ^a   Smith, Eric ^a  

^a WADSWORTH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; CARBON DIOXIDE; IRON; PROTEIN CDS4; PROTEIN SODB; RNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

BACTERIAL GENE; BINDING AFFINITY; CATALYSIS; CONFERENCE PAPER; CORRELATION ANALYSIS; ENZYME ACTIVITY; GENE CONTROL; GENE EXPRESSION; GENE FUNCTION; HYPOXIA; MICROBIAL DIVERSITY; MOLECULAR BIOLOGY; PLASMID; PLASMID PPCP1; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEOMICS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; YERSINIA PESTIS; YERSINIA PSEUDOTUBERCULOSIS;

BACTERIA (MICROORGANISMS); YERSINIA PESTIS; YERSINIA PSEUDOTUBERCULOSIS;

EID: 84934434766     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-0-387-72124-8_11     Document Type: Conference Paper

References (66)

1. Achtman, M., Morelli, G., Zhu, P., Wirth, T., Diehl, I., Kusecek, B., Vogler, A.J., Wagner, D.M., Allender, C.J., Easterday, W.R., Chenal-Francisque, V., Worsham, P., Thomson, N.R., Parkhill, J., Lindler, L.E., Carniel, E. and Keim, P. (2004). Microevolution and history of the plague bacillus, Yersinia pestis. PNAS. U S A 101, 17837-17842.
2. Ammendola, S., Ajello, M., Pasquali, P., Kroll, J.S., Langford, P.R., Rotilio, G., Valenti, P. and Battistoni, A. (2005). Differential contribution of sodC1 and sodC2 to intracellular survival and pathogenicity of Salmonella enterica serovar Choleraesuis. Microbes Infect. 7, 698-707.
3. Bai, G., McCue, L.A. and McDonough, K.A. (2005). Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein. J. Bacteriol. 187, 7795-7804.
4. Bakshi, C.S., Malik, M., Regan, K., Melendez, J.A., Metzger, D.W., Pavlov, V.M. and Sellati, T.J. (2006). Superoxide dismutase B gene (sodB)-deficient mutants of Francisella tularensis demonstrate hypersensitivity to oxidative stress and attenuated virulence. J. Bacteriol. 188, 6443-6448.
5. Barnes, A.M. (1982). Surveillance and control of bubonic plague in the United States. Symp. Zool. Soc. London 50, 237-270.
6. Beauchamp, C. and Fridovich, I. (1971). Superoxide dismutase improved assays and an assay applicable to acrylamide gels. Anal. Biochem. 44, 276-287.
7. Bercovier, H., Mollaret, H.H., Alonso, J.M., Brault, J., Fanning, G.R., Steigerwalt, A.G. and Brenner, D.J. (1980). Intra- and interspecies relatedness of Yersinia pestis by DNA hybridization and its relationship to Yersinia pseudotuberculosis. Curr. Microbiol. 4, 225-229.
8. Bond, C.J., Huang, J., Hajduk, R., Flick, K.E., Heath, P.J. and Stoddard, B.L. (2000). Cloning, sequence and crystallographic structure of recombinant iron superoxide dismutase from Pseudomonas ovalis. Acta Crystallogr. D Biol. Crystallogr. 56, 1359-1366.
9. Brubaker, R.R., Beesley, E.D. and Surgalla, M.J. (1965). Pasteurella pestis: role of pesticin I and iron in experimental plague. Science 149, 422-424.
10. Cash, P. (2003). Proteomics of bacterial pathogens. Adv. Biochem. Eng. Biotechnol. 83, 93-115.
11. Chain, P.S.G., Carniel, E., Larimer, F.W., Lamerdin, J., Stoutland, P.O., Regala, W.M., Georgescu, A.M., Vergez, L.M., Land, M.L., Motin, V.L., Brubaker, R.R., Fowler, J., Hinnebusch, J., Marceau, M., Medigue, C., Simonet, M., Chenal-Francisque, V., Souza, B., Dacheux, D., Elliott, J.M., Derbise, A., Hauser, L.J. and Garcia, E. (2004). Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. PNAS 101, 13826-13831.
12. Chain, P.S.G., Hu, P., Malfatti, S.A., Radnedge, L., Larimer, F., Vergez, L.M., Worsham, P., "Chu, M.C. and Andersen, G.L. (2006). Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J. Bacteriol. 188, 4453-4463.
13. Deng, W., Burland, V., Plunkett, G., III, Boutin, A., Mayhew, G.F., Liss, P., Perna, N.T., Rose, D.J., Mau, B., Zhou, S., Schwartz, D.C., Fetherston, J.D., Lindler, L.E., Brubaker, R.R., Plano, G.V., Straley, S.C., McDonough, K.A., Nilles, M.L., Matson, J.S., Blattner, F.R. and Perry, R.D. (2002). Genome Sequence of Yersinia pestis KIM. J. Bacteriol. 184, 4601-4611.
14. Erickson, D.L., Jarrett, C.O., Wren, B.W. and Hinnebusch, B.J. (2006). Serotype differences and lack of biofilm formation characterize Yersinia pseudotuberculosis infection of the Xenopsylla cheopis flea vector of Yersinia pestis. J. Bacteriol. 188, 1113-1119.
15. Eswar, N., John, B., Mirkovic, N., Fiser, A., Ilyin, V.A., Pieper, U., Stuart, A.C., Marti-Renom, M.A., Madhusudhan, M.S., Yerkovich, B. and Sali, A. (2003). Tools for comparative protein structure modeling and analysis. Nucleic Acids Res. 31, 3375-3380.
16. Ferber, D.M. and Brubaker, R.R. (1981) Plasmids in Yersinia pestis. Infect. Immun. 31, 839-841.
17. Ferber, D.M., Fowler, J.M. and Brubaker, R.R. (1981). Mutations to tolerance and resistance to pesticin and colicins in Escherichia coli. J. Bacteriol. 146, 506-511.
18. Florczyk, M.A., McCue, L.A., Purkayastha, A., Currenti, E., Wolin, M.J. and McDonough, K.A. (2003). A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression. Infect. Immun. 71, 5332-5343.
19. Florczyk, M.A., McCue, L.A., Stack, R.F., Hauer, C.R. and McDonough, K.A. (2001). Identification and characterization of mycobacterial proteins differentially expressed under standing and shaking culture conditions, including Rv2623 from a novel class of putative ATP-binding proteins. Infect. Immun. 69, 5777-5785.
20. Gazdik, M. A. and McDonough, K.A. (2005). Identification of cyclic AMP-regulated genes in Mycobacterium tuberculosis complex bacteria under low-oxygen conditions. J. Bacteriol. 187, 2681-2692.
21. Gee, J.M., Valderas, M.W., Kovach, M.E., Grippe, V.K., Robertson, G.T., Ng, W.L., Richardson, J.M., Winkler, M.E. and Roop, R.M. 2nd. (2005). The Brucella abortus Cu, Zn superoxide dismutase is required for optimal resistance to oxidative killing by murine macrophages and wild-type virulence in experimentally infected mice. Infect. Immun. 73, 2873-2880.
22. Gronberg, A. and Kihlstrom, E. (1989). Structural variations and growth potential of Yersinia enterocolitica under different culture conditions. Apmis 97, 227-235.
23. Guyton, A.C., Ed. (1991). Textbook of medical physiology, 8th ed. Philadelphia, PA, W.B. Saunders Company.
24. Han, Y.W. and Miller, V.L. (1997). Reevaluation of the virulence phenotype of the inv yadA double mutants of Yersinia pseudotuberculosis. Infect. Immun. 65, 327-330.
25. Hare, J. M. and McDonough, K.A. (1999). High-frequency RecA-dependent and -independent mechanisms of congo red binding mutations in Yersinia pestis. J. Bacteriol. 181, 4896-4904.
26. Hinchliffe, S.J., Isherwood, K.E., Stabler, R.A., Prentice, M.B., Rakin, A., Nichols, R.A., Oyston, P.C.F., Hinds, J., Titball, R.W. and Wren, B.W. (2003) Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis. Genome Res. 13, 2018-2029.
27. Hinnebusch, B.J. (2003). Transmission factors: Yersinia pestis genes required to infect the flea vector of plague. Adv. Exp. Med. Biol. 529, 55-62.
28. Hinnebusch, B.J., Perry, R.D. and Schwan, T.G. (1996). Role of the Yersinia pestis hemin storage (hms) locus in the transmission of plague by fleas. Science 273, 367-370.
29. Hinnebusch, B.J., Rudolph, A.E., Cherepanov, P., Dixon, J.E., Schwan, T.G. and Forsberg, A. (2002). Role of Yersinia murine toxin in survival of Yersinia pestis in the midgut of the flea vector. Science 296, 733-735.
30. Ibrahim, A., Goebel, B.M., Liesack, W., Griffiths, M. and Stackebrandt, E. (1993). The phylogeny of the genus Yersinia based on 16S rDNA sequences. FEMS Microb. Letters 114, 173-178.
31. Jungblut, P.R., Muller, E.C., Mattow, J. and Kaufmann, S.H. (2001). Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics. Infect. Immun. 69, 5905-5907.
32. 2- and anaerobiosis-induced changes in physiology and gene expression of different Listeria monocytogenes strains. Appl. Environ. Microbiol. 70, 4111-4117.
33. Lathem, W.W., Crosby, S.D., Miller, V.L. and Goldman, W.E. (2005). Progression of primary pneumonic plague: A mouse model of infection, pathology, and bacterial transcriptional activity. PNAS 102, 17786-17791.
34. Lide, D.R., Ed. (1997). CRC handbook of chemistry and physics. Cleveland, Ohio, CRC Press.
35. Masse, E. and Gottesman, S. (2002). A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. PNAS U S A 99, 4620-4625.
36. McDonough, K. A. and Falkow, S. (1989). A Yersinia pestis-specific DNA fragment encodes temperature-dependent coagulase and fibrinolysin- associated phenotypes. Mol. Microbiol. 3, 767-775.
37. McDonough, K.A., Florczyk, M.A. and Kress, Y. (2000). Intracellular passage within macrophages affects the trafficking of virulent tubercle bacilli upon reinfection of other macrophages in a serum-dependent manner. Tuber Lung Dis. 80, 259-271.
38. Mollaret, H. H. (1965). Sur la nomenclature et la taxonomic du bacille de malassez et vignal. Int. Bull. Bacteriol. Nomencl. Taxon. 15, 97-106.
39. Motin, V.L., Georgescu, A.M., Fitch, J.P., Gu, P.P., Nelson, D.O., Mabery, S.L., Garnham, J.B., Sokhansanj, B.A., Ott, L.L., Coleman, M.A., Elliott, J.M., Kegelmeyer, L.M., Wyrobek, A.J., Slezak, T.R., Brubaker, R.R. and Garcia, E. (2004) Temporal global changes in gene expression during temperature transition in Yersinia pestis. J. Bacteriol. 186, 6298-6305.
40. Najdenski, H.M., Golkocheva, E.N., Vesselinova, A.M. and Russmann, H. (2004). Comparison of the course of infection of virulent Yersinia enterocolitica serotype O:8 with an isogenic sodA mutant in the peroral rabbit model. Int. J. Med. Microbiol. 294, 383-393.
41. Narasipura, S.D., Ault, J.G., Behr, M.J., Chaturvedi, V. and Chaturvedi, S. (2003). Characterization of Cu, Zn superoxide dismutase (SOD1) gene knock-out mutant of Cryptococcus neoformans var. gattii: role in biology and virulence. Mol. Microbiol. 47, 1681-1694.
42. Parkhill, J., Wren, B.W., Thomson, N.R., Titball, R.W., Holden, M.T., Prentice, M.B., Sebaihia, M., James, K.D., Churcher, C., Mungall, K.L., Baker, S., Basham, D., Bentley, S.D., Brooks, K., Cerdeno-Tarraga, A.M., Chillingworth, T., Cronin, A., Davies, R.M., Davis, P., Dougan, G., Feltwell, T., Hamlin, N., Holroyd, S., Jagels, K., Karlyshev, A.V., Leather, S., Moule, S., Oyston, P.C., Quail, M., Rutherford, K., Simmonds, M., Skelton, J., Stevens, K., Whitehead, S. and Barrell, B.G. (2001). Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413, 523-527.
43. Perry, R.D. (1993) Acquisition and storage of inorganic iron and hemin by the yersiniae. Trends Microbiol. 1, 142-147.
44. Perry, R.D. and Fetherston, J.D. (1997). Yersinia pestis - etiologic agent of plague. Clin. Microbiol. Rev. 10, 35-66.
45. Poland, J.D. and Barnes, A.M. (1979). Plague. in J.F. Steele (ed.), CRC Handbook Series in Zoonoses, Vol. 1, Section A. Bacterial, rickettsial and mycotic diseases-1979. CRC Press, Inc., Boca Raton, Fla., pp. 515-516.
46. Portnoy, D.A. and Falkow, S. (1981). Virulence-associated plasmids from Yersinia enterocolitica and Yersinia pestis. J. Bacteriol. 148, 877-883.
47. Protsenko, O.A., Anisimov, P.I., Mosharov, O.T., Konnov, N.P., Popov, Y.A. and Kokushkin, A.M. (1983) Detection and characterization of Yersinia pestis plasmids determining pesticin I, fraction I antigen, and "mouse" toxin synthesis. Soviet Genet. 19, 838-846.
48. Purkayastha, A., McCue, L.A. and McDonough, K.A., et al. (2002). Identification of a Mycobacterium tuberculosis putative classical nitroreductase gene whose expression is coregulated with that of the acr aene within macrophages, in standing versus shaking cultures, and under low oxygen conditions. Infect. Immun. 70, 1518-1529.
49. Quan, T. J., Barnes, A.M. and Polland, J.D. (1981). Yersinioses, p. 723-745. In A. Balows and W. J. Hausler, (ed.). Diagnostic procedures for bacterial, mycotic and parasitic infections, 6th edition. American Public Health Association, Washington, D. C.
50. Roggenkamp, A., Bittner, T., Leitritz, L., Sing, A. and Heesemann, J. (1997). Contribution of the Mn-cofactored superoxide dismutase (SodA) to the virulence of Yersinia enterocolitica serotype O8. Infect. Immun. 65, 4705-4710.
51. Rosqvist, R., Skurnik, M. and Wolf-Watz, H. (1988). Increased virulence of Yersinia pseudotuberculosis by two independent mutations. Nature 334, 522-525.
52. Ross, P.L., Huang, Y.N., Marchese, J.N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A. and Pappin, D.J. (2004). Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169.
53. Sebbane, F., Lemaîre, N., Sturdevant, D.E., Rebeil, R., Virtaneva, K., Porcella, S.F. and Hinnebusch, B.J. (2006). Adaptive response of Yersinia pestis to extracellular effectors of innate immunity during bubonic plague. PNAS 103, 11766-11771.
54. Seoh, H.K. and Tai, P.C. (1999). Catabolic repression of secB expression is positively controlled by cyclic AMP (cAMP) receptor protein-cAMP complexes at the transcriptional level. J. Bacteriol. 181, 1892-1899.
55. Simonet, M., Riot, B., Fortineau, M. and Berche, P. (1996). Invasin production by Yersinia pestis is abolished by insertion of an IS200-like element within the inv gene. Infect. Immun. 64, 375-379.
56. Sodeinde, O.A. and Goguen, J.D. (1988). Genetic analysis of the 9.5-kilobase virulence plasmid of Yersinia pestis. Infect. Immun. 56, 2743-2748.
57. Sodeinde, O.A., Sample, A.K., Brubaker, R.R. and Goguen, J.D. (1988). Plasminogen activator/coagulase gene of Yersinia pestis is responsible for degradation of plasmid-encoded outer membrane proteins. Infect. Immun. 56, 2749-2752.
58. Stabler, R.A., Hinds, J., Witney, A.A., Isherwood, K., Oyston, P., Titball, R., Wren, B., Hinchliffe, S., Prentice, M., Mangan, J.A. and Butcher, P.D. (2003). Construction of a Yersinia pestis microarray. Adv. Exp. Med. Biol. 529, 47-49.
59. Straley, S.C. and Perry, R.D. (1995). Environmental modulation of gene expression and pathogenesis in Yersinia. Trends Microbiol. 3, 310-317.
60. Stretton, S. and Goodman, A.E. (1998). Carbon dioxide as a regulator of gene expression in microorganisms. Antonie Van Leeuwenhoek 73, 79-85.
61. Sun, L., Fukamachi, T., Saito, H. and Kobayashi, H. (2005). Carbon dioxide increases acid resistance in Escherichia coli. Lett. Appl. Microbiol. 40, 397-400.
62. Timm, J., Post, F.A., Bekker, L.G., Walther, G.B., Wainwright, H.C., Manganelli, R., Chan, W.T., Tsenova, L., Gold, B., Smith, I., Kaplan, G. and McKinney, J.D. (2003). Differential expression of iron-, carbon-, and oxygen-responsive mycobacterial genes in the lungs of chronically infected mice and tuberculosis patients. PNAS U S A 100, 14321-14326.
63. Touati, D. (1997). Superoxide dismutases in bacteria and pathogen protists. Oxidative stress and the molecular biology of antioxidant defenses. J.G. Scandlios. New York, Cold Spring Harbor Laboratory Press: 447-493.
64. Une, T. (1977). Studies on the pathogenicity of Yersinia enterocolitica. III. Comparative studies between Y. enterocolitica and Y. pseudotuberculosis. Microbiol. Immunol. 21, 505-516.
65. Zhou, D., Han, Y., Song, Y., Tong, Z., Wang, J., Guo, Z., Pei, D., Pang, X., Zhai, J., Li, M., Cui, B., Qi, Z., Jin, L., Dai, R., Du, Z., Bao, J., Zhang, X., Yu, J., Wang, J., Huang, P. and Yang, R. (2004). DNA microarray analysis of genome dynamics in Yersinia pestis: Insights into bacterial genome microevolution and niche adaptation. J. Bacteriol. 186, 5138-5146.
66. Zhou, D., Qin, L., Han, Y., Qiu, J., Chen, Z., Li, B., Song, Y., Wang, J., Guo, Z., Zhai, J., Du, Z., Wang, X. and Yang, R. (2006). Global analysis of iron assimilation and fur regulation in Yersinia pestis. FEMS Microbiol. Lett. 258, 9-17.