Genetic control of plant height in European winter wheat cultivars

Theoretical and Applied Genetics

Volumn 128, Issue 5, 2015, Pages 865-874

  Würschum, Tobias ^a   Langer, Simon M ^a   Longin, C Friedrich H ^a  

^a UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FACSIMILE; GENES; PLANTS (BOTANY);

COPY NUMBER VARIATIONS; CROP PERFORMANCE; DWARFING GENES; FINE ADJUSTMENTS; GENETIC ARCHITECTURE; GENETIC CONTROL; SOURCES OF VARIATION; WHEAT (TRITICUM AESTIVUM L.);

CROPS;

GENETIC MARKER; PLANT DNA;

ALLELE; BIOLOGICAL MODEL; CHROMOSOME MAP; CLASSIFICATION; DNA SEQUENCE; EPISTASIS; EUROPE; GENETIC MARKER; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; PHENOTYPE; PLANT GENE; QUANTITATIVE TRAIT LOCUS; WHEAT;

ALLELES; CHROMOSOME MAPPING; DNA, PLANT; EPISTASIS, GENETIC; EUROPE; GENES, PLANT; GENETIC MARKERS; GENOTYPE; MODELS, GENETIC; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SEQUENCE ANALYSIS, DNA; TRITICUM;

EID: 84934299133     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-015-2476-2     Document Type: Article

References (49)

1. Archard P, Cheng H, De Grauwe L, Decat J, Schoutteten H, Moritz T, Van Der Straeten D, Peng JR, Harberd NP (2006) Integration of plant responses to environmentally activated phytohormonal signals. Science 311:91–94
2. Beales J, Turner A, Griffiths S, Snape JW, Laurie DA (2007) A Pseudo-Response Regulator is misexpressed in the photoperiod insensitive Ppd-D1a mutant of wheat (Triticum aestivum L.). Theor Appl Genet 115:721–733
3. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc 57:289–300
4. Börner A, Worland AJ, Plaschke J, Schumann E, Law CN (1993) Pleiotropic effects of genes for reduced height (Rht) and day-length insensitivity (Ppd) on yield and its components for wheat grown in middle Europe. Plant Breed 111:204–216
5. Börner A, Plaschke J, Korzun V, Worland AJ (1996) The relationships between the dwarfing genes of wheat and rye. Euphytica 89:69–75
6. Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ et al (2009) The genetic architecture of maize flowering time. Science 325:714–718
7. Bürstmayr M, Huber K, Heckmann J, Steiner B, Nelson JC, Bürstmayr H (2012) Mapping of QTL for Fusarium head blight resistance and morphological and developmental traits in three backcross populations derived from Triticum dicoccum × Triticum durum. Theor Appl Genet 125:1751–1765
8. CadalenT Sourdille P, Charmet G, Tixier MH, Gay G, Boeuf C, Bernard S, Leroy P, Bernard M (1998) Molecular markers linked to genes affecting plant height in wheat using a doubled-haploid population. Theor Appl Genet 96:391–397
9. Carlborg Ö, Haley CS (2004) Epistasis: too often neglected in complex trait studies? Nat Rev Genet 5:618–625
10. Díaz A, Zikhali M, Turner AS, Isaac P, Laurie DA (2012) Copy number variation affecting the Photoperiod-B1 and Vernalization-A1 genes is associated with altered flowering time in wheat (Triticum aestivum). PLoS ONE 7:e33234
11. Ellis M, Spielmeyer W, Gale K, Rebetzke G, Richards R (2002) “Perfect” markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat. Theor Appl Genet 105:1038–1042
12. Ellis MH, Bonnett DG, Rebetzke GJ (2007) A 192 bp allele at the Xgwm261 locus is not always associated with the Rht8 dwarfing gene in wheat (Triticum aesitvum L.). Euphytica 157:209–214
13. Flintham JE, Börner A, Worland AJ, Gale MD (1997) Optimizing wheat grain yield: effects of Rht (gibberellin-insensitive) dwarfing genes. J Agric Sci 128:11–25
14. Gasperini D, Greenland A, Hedden P, Dreos R, Harwood W, Griffiths S (2012) Genetic and physiological analysis of Rht8 in bread wheat: an alternative source of semi-dwarfism with a reduced sensitivity to brassinosteroids. J Exp Bot 63:4419–4436
15. Gilmour AR, Gogel B, Cullis B, Thompson R (2009) ASReml user guide release 3.0. VSN International Ltd, Hemel Hempstead, UK
16. Griffiths S, Simmonds J, Leverington M, Wang Y, Fish L, Sayers L, Alibert L, Orford S, Wingen L, Snape J (2012) Meta-QTL analysis of the genetic control of crop height in elite European winter wheat germplasm. Mol Breed 29:159–171
17. Hedden P (2003) The genes of the green revolution. Trends Genet 19:5–9
18. Kamran A, Iqbal M, Spaner D (2014) Flowering time in wheat (Triticum aestivum L.): a key factor for global adaptability. Euphytica 197:1–26
19. Kato K, Miura H, Sawada S (1999) QTL mapping of genes controlling ear emergence time and plant height on chromosome 5A of wheat. Theor Appl Genet 98:472–477
20. Knopf C, Becker H, Ebmeyer E, Korzun V (2008) Occurrence of three dwarfing Rht genes in German winter wheat varieties. Cer Res Comm 36:553–560
21. Kollers S, Rodemann B, Ling J, Korzun V, Ebmeyer E, Argillier O, Hinze M, Plieske J, Kulosa D, Ganal MW, Röder MS (2013) Whole genome association mapping of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.). PLoS ONE 8:e57500
22. Korzun V, Röder MS, Ganal MW, Worland AJ, Law CN (1998) Genetic analysis of the dwarfing gene (Rht8) in wheat. Part I. Molecular mapping of Rht8 on the short arm of chromosome 2D of bread wheat (Triticum aestivum L.). Theor Appl Genet 96:1104–1109
23. Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19:1639–1645
24. Langer SM, Longin CFH, Würschum T (2014) Flowering time control in European winter wheat. Front Plant Sci. doi:10.3389/fpls.2014.00537
25. Law CN, Snape JW, Worland AJ (1978) Genetic relationship between height and yield in wheat. Heredity 40:133–151
26. Le Couviour F, Faure S, Poupard B, Flodrops Y, Dubreuil P, Praud S (2011) Analysis of genetic structure in a panel of wheat varieties and relevance for association mapping. Theor Appl Genet 123:715–727
27. Le Gouis J, Bordes J, Ravel C, Heumez E, Faure S, Praud S, Galic N, Remoué C, Balfourier F, Allard V, Rousset M (2012) Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat. Theor Appl Genet 124:597–611
28. Liu W, Reif JC, Ranc N, Porta GD, Würschum T (2012) Comparison of biometrical approaches for QTL detection in multiple segregating families. Theor Appl Genet 125:987–998
29. Longin CFH, Gowda M, Mühleisen J, Ebmeyer E, Kazman E, Schachschneider R, Schacht J, Kirchhoff M, Zhao Y, Reif JC (2013) Hybrid wheat: quantitative genetic parameters and consequences for the design of breeding programs. Theor Appl Genet 126:2791–2801
30. Piepho HP, Möhring J (2007) Computing heritability and selection response from unbalanced plant breeding trials. Genetics 177:1881–1888
31. Reif JC, Gowda M, Maurer HP, Longin C, Korzun V, Ebmeyer E, Bothe R, Pietsch C, Würschum T (2011a) Association mapping for quality traits in soft winter wheat. Theor Appl Genet 122:961–970
32. Reif JC, Maurer HP, Korzun V, Ebmeyer E, Miedaner T, Würschum T (2011b) Mapping QTLs with main and epistatic effects underlying grain yield and heading time in soft winter wheat. Theor Appl Genet 123:283–292
33. Rousset M, Bonnin I, Remoué C, Falque M, Rhoné B, Veyrieras J, Madur D, Murigneux A, Balfourier F, Le Gouis J, Santoni S, Goldringer I (2011) Deciphering the genetics of flowering time by an association study on candidate genes in bread wheat (Triticum aestivum L.). Theor Appl Genet 123:907–926
34. Srinivasachary Gosman N, Steed A, Simmonds J, Leverington-Waite M, Wang Y, Snape J, Nicholson P (2008) Susceptibility to Fusarium head blight is associated with the Rht-D1b semi-dwarfing allele in wheat. Theor Appl Genet 116:1145–1153
35. Steinhoff J, Liu W, Reif JC, Porta GD, Ranc N, Würschum T (2012) Detection of QTL for flowering time in multiple families of elite maize. Theor Appl Genet 125:1539–1551
36. Utz HF, Melchinger AE, Schön CC (2000) Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154:1839–1849
37. Wilhelm EP, Mackay IJ, Saville RJ, Korolev AV, Balfourier F, Greenland AJ, Boulton MI, Powell W (2013a) Haplotype dictionary for the Rht-1 loci in wheat. Theor Appl Genet 126:1733–1747
38. Wilhelm EP, Boulton MI, Al-Kaff N, Balfourier F, Bordes J, Greenland AJ, Powell W, Mackay IJ (2013b) Rht-1 and Ppd-D1 associations with height, GA sensitivity, and days to heading in a worldwide bread wheat collection. Theor Appl Genet 126:2233–2243
39. Williams E, Piepho H-P, Whitaker D (2011) Augmented p-rep designs. Biom J 53:19–27
40. Worland T, Snape JW (2001) Genetic basis of worldwide wheat varietal improvement. In: Bonjean AP, Angus WJ (eds) The world wheat book—a history of wheat breeding, vol 1. Lavoisier publishing, Paris, pp 59–100
41. Worland AJ, Petrovic S, Law CN (1988) Genetic analysis of chromosome 2D of wheat II. The importance of this chromosome to Yugoslavian varieties. Plant Breed 100:247–259
42. Worland AJ, Korzun V, Röder MS, Ganal MW, Law CN (1998) Genetic analysis of the dwarfing gene Rht8 in wheat. Part II. The distribution and adaptive significance of allelic variants at the Rht8 locus of wheat as revealed by microsatellite screening. Theor Appl Genet 96:1110–1120
43. Würschum T (2012) Mapping QTL for agronomic traits in breeding populations. Theor Appl Genet 125:201–210
44. Würschum T, Kraft T (2014a) Cross-validation in association mapping and its relevance for the estimation of QTL parameters of complex traits. Heredity 112:463–468
45. Würschum T, Kraft T (2014b) Evaluation of multi-locus models for genome-wide association studies: a case study in sugar beet. Heredity. doi:10.1038/hdy.2014.98
46. Würschum T, Liu W, Gowda M, Maurer HP, Fischer S, Schechert A, Reif JC (2012) Comparison of biometrical models for joint linkage association mapping. Heredity 108:332–340
47. Würschum T, Maurer HP, Dreyer F, Reif JC (2013) Effect of inter- and intragenic epistasis on the heritability of oil content in rapeseed (Brassica napus L.). Theor Appl Genet 126:435–441
48. Würschum T, Liu W, Busemeyer L, Tucker MR, Reif JC, Weissmann EA, Hahn V, Ruckelshausen A, Maurer HP (2014) Mapping dynamic QTL for plant height in triticale. BMC Genet 15:59
49. Zhao Y, Mette MF, Gowda M, Longin CFH, Reif JC (2014) Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat. Heredity 112:638–645