-
1
-
-
39049156065
-
Short read fragment assembly of bacterial genomes
-
Chaisson,M.J. and Pevzner,P.A. (2008) Short read fragment assembly of bacterial genomes. Genome Res., 18, 324-330.
-
(2008)
Genome Res.
, vol.18
, pp. 324-330
-
-
Chaisson, M.J.1
Pevzner, P.A.2
-
2
-
-
0004116989
-
-
2nd edn. The MITPress/McGraw-Hill Book Company
-
Cormen,T.H. et al. (2001) Introduction to Algorithms, 2nd edn. The MITPress/McGraw-Hill Book Company, pp. 505-509.
-
(2001)
Introduction to Algorithms
, pp. 505-509
-
-
Cormen, T.H.1
-
3
-
-
71049176982
-
Genome 10K: a proposal to obtain wholegenome sequence for 10 000 vertebrate species
-
Genome 10K Community of Scientists
-
Genome 10K Community of Scientists (2009) Genome 10K: a proposal to obtain wholegenome sequence for 10 000 vertebrate species. J. Heredity, 00, 659-674.
-
(2009)
J. Heredity
, vol.100
, pp. 659-674
-
-
-
4
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill,S.R. et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science, 312, 1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
-
5
-
-
79551589417
-
HiTEC: accurate error correction in high-throughput sequencing data
-
Ilie,L. et al. (2010) HiTEC: accurate error correction in high-throughput sequencing data. Bioinformatics, 27, 295-302.
-
(2010)
Bioinformatics
, vol.27
, pp. 295-302
-
-
Ilie, L.1
-
7
-
-
78649358717
-
Quake: quality-aware detection and correction of sequencing errors
-
Kelley,D. et al. (2010) Quake: quality-aware detection and correction of sequencing errors. Genome Biol., 11, R116.
-
(2010)
Genome Biol.
, vol.11
-
-
Kelley, D.1
-
8
-
-
33847306942
-
Specific single-cell isolation and genomic amplification of uncultured microorganisms
-
Kvist,T. et al. (2007) Specific single-cell isolation and genomic amplification of uncultured microorganisms. Appl. Microbiol. Biotechnol., 74, 926-935.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.74
, pp. 926-935
-
-
Kvist, T.1
-
9
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead,B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
-
10
-
-
77951940273
-
Modeling non-uniformity in short-read rates in rna-seq data
-
Li,J. et al. (2010) Modeling non-uniformity in short-read rates in rna-seq data. Genome Biol., 11, R50.
-
(2010)
Genome Biol.
, vol.11
-
-
Li, J.1
-
11
-
-
0036202921
-
PatternHunter: faster and more sensitive homology search
-
Ma,B. et al. (2002) PatternHunter: faster and more sensitive homology search. Bioinformatics, 18, 440-445.
-
(2002)
Bioinformatics
, vol.18
, pp. 440-445
-
-
Ma, B.1
-
12
-
-
24044455869
-
Genome sequencing inmicrofabricated high-density picolitre reactors
-
Margulies,M. et al. (2005) Genome sequencing inmicrofabricated high-density picolitre reactors. Nature, 437, 376-80.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
13
-
-
34548688408
-
Insights into the genome of large sulfur bacteria revealed by analysis of single filaments
-
Mussmann,M. et al. (2007) Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biol., 5, e230.
-
(2007)
PLoS Biol.
, vol.5
-
-
Mussmann, M.1
-
14
-
-
0035859921
-
An Eulerian path approach to DNAfragment assembly
-
Pevzner,P.A. et al. (2001) An Eulerian path approach to DNAfragment assembly. Proc. Natl Acad. Sci. USA, 98, 9748-9753.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
-
15
-
-
67650074197
-
Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing
-
Qu,W. et al. (2009) Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing. Genome Res., 19, 1309-315.
-
(2009)
Genome Res.
, vol.19
, pp. 1309-1315
-
-
Qu, W.1
-
16
-
-
20444418081
-
Genomic DNA amplification from a single bacterium
-
Raghunathan,A., Jr et al. (2005) Genomic DNA amplification from a single bacterium. Appl. Environ. Microbiol., 71, 3342-3347.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3342-3347
-
-
Raghunathan Jr., A.1
-
17
-
-
70149108769
-
Whole genome amplification and de novo assembly of single bacterial cells
-
Rodrigue,S. et al. (2009) Whole genome amplification and de novo assembly of single bacterial cells. PLoS ONE, 4, e6864.
-
(2009)
PLoS ONE
, vol.4
-
-
Rodrigue, S.1
-
18
-
-
77952857079
-
Correction of sequencing errors in a mixed set of reads
-
Salmela,L. (2010) Correction of sequencing errors in a mixed set of reads. Bioinformatics, 26, 1284-1290.
-
(2010)
Bioinformatics
, vol.26
, pp. 1284-1290
-
-
Salmela, L.1
-
19
-
-
69949178009
-
SHREC: a short-read error correction method
-
Schroder,J. et al. (2009) SHREC: a short-read error correction method. Bioinformatics, 25, 2157-2163.
-
(2009)
Bioinformatics
, vol.25
, pp. 2157-2163
-
-
Schroder, J.1
-
20
-
-
77952001158
-
A parallel algorithm for error correction in high-throughput shortread data on cuda-enabled graphics hardware
-
Shi,H. et al. (2010) A parallel algorithm for error correction in high-throughput shortread data on cuda-enabled graphics hardware. J. Comput. Biol., 7, 603-615.
-
(2010)
J. Comput. Biol.
, vol.17
, pp. 603-615
-
-
Shi, H.1
-
21
-
-
77952973011
-
Recount: expectation maximization based error correction tool for next generation sequencing data
-
Wijaya,E. et al. (2009) Recount: expectation maximization based error correction tool for next generation sequencing data. Genome Inform. Ser., 23, 89-201.
-
(2009)
Genome Inform. Ser.
, vol.23
, pp. 189-201
-
-
Wijaya, E.1
-
22
-
-
77957758142
-
Reptile: representative tiling for short read error correction
-
Yang,X. et al. (2010) Reptile: representative tiling for short read error correction. Bioinformatics, 26, 2526-2533.
-
(2010)
Bioinformatics
, vol.26
, pp. 2526-2533
-
-
Yang, X.1
-
23
-
-
33947235074
-
The sorcerer ii global ocean sampling expedition: Expanding the universe of protein families
-
Yooseph,S. et al. (2007) The sorcerer ii global ocean sampling expedition: Expanding the universe of protein families. PLoS Biol., 5, e16.
-
(2007)
PLoS Biol.
, vol.5
-
-
Yooseph, S.1
-
24
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino,D.R. and Birney,E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
25
-
-
78349249371
-
Edar: an efficient error detection and removal algorithm for next generation sequencing data
-
Zhao,X. et al. (2010) Edar: an efficient error detection and removal algorithm for next generation sequencing data. J. Comput. Biol., 17, 1549-1560.
-
(2010)
J. Comput. Biol.
, vol.17
, pp. 1549-1560
-
-
Zhao, X.1
|