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Volumn 3, Issue 1, 2014, Pages 1-8

Isolation and characterization of H9N2 influenza virus isolates from poultry respiratory disease outbreak

Author keywords

Avian influenza; Next generation sequencing; Phylogeny; Poultry; Virus isolation

Indexed keywords


EID: 84933053713     PISSN: None     EISSN: 21931801     Source Type: Journal    
DOI: 10.1186/2193-1801-3-196     Document Type: Article
Times cited : (28)

References (36)
  • 4
    • 84879692810 scopus 로고    scopus 로고
    • Genetic characterization of HA gene of low pathogenic H9N2 influenza viruses isolated in Israel during 2006-2012 periods
    • doi:10.1007/s11262-012-0852-4
    • Davidson I, Shkoda I, Golender N, Perk S, Lapin K, Khinich Y, Panshin A (2013) Genetic characterization of HA gene of low pathogenic H9N2 influenza viruses isolated in Israel during 2006-2012 periods. Virus Genes 46(2):255-263, doi:10.1007/s11262-012-0852-4
    • (2013) Virus Genes , vol.46 , Issue.2 , pp. 255-263
    • Davidson, I.1    Shkoda, I.2    Golender, N.3    Perk, S.4    Lapin, K.5    Khinich, Y.6    Panshin, A.7
  • 5
    • 84901595173 scopus 로고    scopus 로고
    • Molecular evolution of H9N2 avian influenza viruses in Israel
    • doi:10.1007/s11262-014-1037-0
    • Davidson I, Fusaro A, Heidari A, Monne I, Cattoli G (2014) Molecular evolution of H9N2 avian influenza viruses in Israel. Virus Genes, doi:10.1007/s11262-014-1037-0
    • (2014) Virus Genes
    • Davidson, I.1    Fusaro, A.2    Heidari, A.3    Monne, I.4    Cattoli, G.5
  • 6
    • 33747839468 scopus 로고    scopus 로고
    • ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    • Web Server issue doi:10.1093/ nar/gkl124
    • de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N (2006) ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res 34(Web Server issue):W362-W365, doi:10.1093/ nar/gkl124
    • (2006) Nucleic Acids Res , vol.34
    • de Castro, E.1    Sigrist, C.J.2    Gattiker, A.3    Bulliard, V.4    Langendijk-Genevaux, P.S.5    Gasteiger, E.6    Bairoch, A.7    Hulo, N.8
  • 7
    • 79952206673 scopus 로고    scopus 로고
    • Phylogenetic diversity and genotypical complexity of H9N2 influenza A viruses revealed by genomic sequence analysis
    • doi:10.1371/journal.pone.0017212
    • Dong G, Luo J, Zhang H, Wang C, Duan M, Deliberto TJ, Nolte DL, Ji G, He H (2011) Phylogenetic diversity and genotypical complexity of H9N2 influenza A viruses revealed by genomic sequence analysis. PloS One 6(2):e17212, doi:10.1371/journal.pone.0017212
    • (2011) PloS One , vol.6 , Issue.2
    • Dong, G.1    Luo, J.2    Zhang, H.3    Wang, C.4    Duan, M.5    Deliberto, T.J.6    Nolte, D.L.7    Ji, G.8    He, H.9
  • 10
    • 0033809121 scopus 로고    scopus 로고
    • H9N2 Influenza Viruses Possessing H5N1-Like Internal Genomes Continue To Circulate in Poultry in Southeastern China
    • doi:10.1128/jvi.74.20.9372-9380.2000
    • Guan Y, Shortridge KF, Krauss S, Chin PS, Dyrting KC, Ellis TM, Webster RG, Peiris M (2000) H9N2 Influenza Viruses Possessing H5N1-Like Internal Genomes Continue To Circulate in Poultry in Southeastern China. J Virol 74(20):9372-9380, doi:10.1128/jvi.74.20.9372-9380.2000
    • (2000) J Virol , vol.74 , Issue.20 , pp. 9372-9380
    • Guan, Y.1    Shortridge, K.F.2    Krauss, S.3    Chin, P.S.4    Dyrting, K.C.5    Ellis, T.M.6    Webster, R.G.7    Peiris, M.8
  • 11
    • 67649968023 scopus 로고    scopus 로고
    • Novel genotypes of H9N2 influenza A viruses isolated from poultry in Pakistan containing NS genes similar to highly pathogenic H7N3 and H5N1 viruses
    • doi:10.1371/journal.pone.0005788
    • Iqbal M, Yaqub T, Reddy K, McCauley JW (2009) Novel genotypes of H9N2 influenza A viruses isolated from poultry in Pakistan containing NS genes similar to highly pathogenic H7N3 and H5N1 viruses. PloS One 4(6):e5788, doi:10.1371/journal.pone.0005788
    • (2009) PloS One , vol.4 , Issue.6
    • Iqbal, M.1    Yaqub, T.2    Reddy, K.3    McCauley, J.W.4
  • 12
    • 41949123710 scopus 로고    scopus 로고
    • A new influenza virus virulence determinant: The NS1 protein four C-terminal residues modulate pathogenicity
    • doi:10.1073/pnas.0800482105
    • Jackson D, Hossain MJ, Hickman D, Perez DR, Lamb RA (2008) A new influenza virus virulence determinant: the NS1 protein four C-terminal residues modulate pathogenicity. Proc Natl Acad Sci U S A 105(11):4381-4386, doi:10.1073/pnas.0800482105
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.11 , pp. 4381-4386
    • Jackson, D.1    Hossain, M.J.2    Hickman, D.3    Perez, D.R.4    Lamb, R.A.5
  • 13
    • 0033760939 scopus 로고    scopus 로고
    • Molecular correlates of influenza A H5N1 virus pathogenesis in mice
    • Katz JM, Lu X, Tumpey TM, Smith CB, Shaw MW, Subbarao K (2000) Molecular correlates of influenza A H5N1 virus pathogenesis in mice. J Virol 74 (22):10807-10810
    • (2000) J Virol , vol.74 , Issue.22 , pp. 10807-10810
    • Katz, J.M.1    Lu, X.2    Tumpey, T.M.3    Smith, C.B.4    Shaw, M.W.5    Subbarao, K.6
  • 14
    • 0023736676 scopus 로고
    • Sequence requirements for cleavage activation of influenza virus hemagglutinin expressed in mammalian cells
    • Kawaoka Y, Webster RG (1988) Sequence requirements for cleavage activation of influenza virus hemagglutinin expressed in mammalian cells. Proc Natl Acad Sci U S A 85(2):324-328
    • (1988) Proc Natl Acad Sci U S A , vol.85 , Issue.2 , pp. 324-328
    • Kawaoka, Y.1    Webster, R.G.2
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16(2):111-120
    • (1980) J Mol Evol , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0035171964 scopus 로고    scopus 로고
    • Amino acids responsible for the absolute sialidase activity of the influenza A virus neuraminidase: Relationship to growth in the duck intestine
    • doi:10.1128/ JVI.75.23.11773-11780.2001
    • Kobasa D, Wells K, Kawaoka Y (2001) Amino acids responsible for the absolute sialidase activity of the influenza A virus neuraminidase: relationship to growth in the duck intestine. J Virol 75(23):11773-11780, doi:10.1128/ JVI.75.23.11773-11780.2001
    • (2001) J Virol , vol.75 , Issue.23 , pp. 11773-11780
    • Kobasa, D.1    Wells, K.2    Kawaoka, Y.3
  • 17
    • 59649103887 scopus 로고    scopus 로고
    • PB2 protein of a highly pathogenic avian influenza virus strain A/chicken/ Yamaguchi/7/2004 (H5N1) determines its replication potential in pigs
    • doi:10.1128/JVI.01879-08
    • Manzoor R, Sakoda Y, Nomura N, Tsuda Y, Ozaki H, Okamatsu M, Kida H (2009) PB2 protein of a highly pathogenic avian influenza virus strain A/chicken/ Yamaguchi/7/2004 (H5N1) determines its replication potential in pigs. J Virol 83(4):1572-1578, doi:10.1128/JVI.01879-08
    • (2009) J Virol , vol.83 , Issue.4 , pp. 1572-1578
    • Manzoor, R.1    Sakoda, Y.2    Nomura, N.3    Tsuda, Y.4    Ozaki, H.5    Okamatsu, M.6    Kida, H.7
  • 18
    • 0032927194 scopus 로고    scopus 로고
    • The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties
    • Matrosovich M, Zhou N, Kawaoka Y, Webster R (1999) The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J Virol 73(2):1146-1155
    • (1999) J Virol , vol.73 , Issue.2 , pp. 1146-1155
    • Matrosovich, M.1    Zhou, N.2    Kawaoka, Y.3    Webster, R.4
  • 19
    • 0035866642 scopus 로고    scopus 로고
    • H9N2 influenza A viruses from poultry in Asia have human virus-like receptor specificity
    • doi:10.1006/viro.2000.0799
    • Matrosovich MN, Krauss S, Webster RG (2001) H9N2 influenza A viruses from poultry in Asia have human virus-like receptor specificity. Virology 281 (2):156-162, doi:10.1006/viro.2000.0799
    • (2001) Virology , vol.281 , Issue.2 , pp. 156-162
    • Matrosovich, M.N.1    Krauss, S.2    Webster, R.G.3
  • 21
    • 56349153651 scopus 로고    scopus 로고
    • Co-circulation of two sublineages of HPAI H5N1 virus in the Kingdom of Saudi Arabia with unique molecular signatures suggesting separate introductions into the commercial poultry and falconry sectors
    • doi:10.1099/ vir.0.2008/004259-0
    • Monne I, Fusaro A, Al-Blowi MH, Ismail MM, Khan OA, Dauphin G, Tripodi A, Salviato A, Marangon S, Capua I, Cattoli G (2008) Co-circulation of two sublineages of HPAI H5N1 virus in the Kingdom of Saudi Arabia with unique molecular signatures suggesting separate introductions into the commercial poultry and falconry sectors. J Gen Virol 89(Pt 11):2691-2697, doi:10.1099/ vir.0.2008/004259-0
    • (2008) J Gen Virol , vol.89 , Issue.Pt 11 , pp. 2691-2697
    • Monne, I.1    Fusaro, A.2    Al-Blowi, M.H.3    Ismail, M.M.4    Khan, O.A.5    Dauphin, G.6    Tripodi, A.7    Salviato, A.8    Marangon, S.9    Capua, I.10    Cattoli, G.11
  • 22
    • 53849125470 scopus 로고    scopus 로고
    • Host restriction of avian influenza viruses at the level of the ribonucleoproteins
    • doi:10.1146/annurev.micro.62.081307.162746
    • Naffakh N, Tomoiu A, Rameix-Welti MA, van der Werf S (2008) Host restriction of avian influenza viruses at the level of the ribonucleoproteins. Annu Rev Microbiol 62:403-424, doi:10.1146/annurev.micro.62.081307.162746
    • (2008) Annu Rev Microbiol , vol.62 , pp. 403-424
    • Naffakh, N.1    Tomoiu, A.2    Rameix-Welti, M.A.3    van der Werf, S.4
  • 25
    • 0030863130 scopus 로고    scopus 로고
    • Regulation of receptor binding affinity of influenza virus hemagglutinin by its carbohydrate moiety
    • Ohuchi M, Ohuchi R, Feldmann A, Klenk HD (1997) Regulation of receptor binding affinity of influenza virus hemagglutinin by its carbohydrate moiety. J Virol 71(11):8377-8384
    • (1997) J Virol , vol.71 , Issue.11 , pp. 8377-8384
    • Ohuchi, M.1    Ohuchi, R.2    Feldmann, A.3    Klenk, H.D.4
  • 27
    • 84864771999 scopus 로고    scopus 로고
    • Avian influenza surveillance reveals presence of low pathogenic avian influenza viruses in poultry during 2009-2011 in the West Bengal State, India
    • doi:10.1186/1743-422X-9-151
    • Pawar SD, Kale SD, Rawankar AS, Koratkar SS, Raut CG, Pande SA, Mullick J, Mishra AC (2012) Avian influenza surveillance reveals presence of low pathogenic avian influenza viruses in poultry during 2009-2011 in the West Bengal State, India. Virol J 9:151, doi:10.1186/1743-422X-9-151
    • (2012) Virol J , vol.9 , pp. 151
    • Pawar, S.D.1    Kale, S.D.2    Rawankar, A.S.3    Koratkar, S.S.4    Raut, C.G.5    Pande, S.A.6    Mullick, J.7    Mishra, A.C.8
  • 28
    • 0023333393 scopus 로고
    • Influenza surveillance in Pune (India) during 1983-85
    • Rao BL (1987) Influenza surveillance in Pune (India) during 1983-85. Indian J Med Res 85:492-495
    • (1987) Indian J Med Res , vol.85 , pp. 492-495
    • Rao, B.L.1
  • 29
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • doi:10.1093/bioinformatics/btr026
    • Schmieder R, Edwards R (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27(6):863-864, doi:10.1093/bioinformatics/btr026
    • (2011) Bioinformatics , vol.27 , Issue.6 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 30
    • 38749106195 scopus 로고    scopus 로고
    • Structure and mechanism of the M2 proton channel of influenza A virus
    • doi:10.1038/nature06531
    • Schnell JR, Chou JJ (2008) Structure and mechanism of the M2 proton channel of influenza A virus. Nature 451(7178):591-595, doi:10.1038/nature06531
    • (2008) Nature , vol.451 , Issue.7178 , pp. 591-595
    • Schnell, J.R.1    Chou, J.J.2
  • 32
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi:10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739, doi:10.1093/molbev/msr121
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 33
    • 78651504041 scopus 로고    scopus 로고
    • Analysis of the PDZ binding specificities of Influenza A virus NS1 proteins
    • doi:10.1186/1743-422X-8-25
    • Thomas M, Kranjec C, Nagasaka K, Matlashewski G, Banks L (2011) Analysis of the PDZ binding specificities of Influenza A virus NS1 proteins. Virol J 8:25, doi:10.1186/1743-422X-8-25
    • (2011) Virol J , vol.8 , pp. 25
    • Thomas, M.1    Kranjec, C.2    Nagasaka, K.3    Matlashewski, G.4    Banks, L.5
  • 35
    • 77953123292 scopus 로고    scopus 로고
    • Equine influenza outbreak in India (2008-09): Virus isolation, sero-epidemiology and phylogenetic analysis of HA gene
    • doi:10.1016/j.vetmic.2009.12.007
    • Virmani N, Bera BC, Singh BK, Shanmugasundaram K, Gulati BR, Barua S, Vaid RK, Gupta AK, Singh RK (2010) Equine influenza outbreak in India (2008-09): virus isolation, sero-epidemiology and phylogenetic analysis of HA gene. Vet Microbiol 143(2-4):224-237, doi:10.1016/j.vetmic.2009.12.007
    • (2010) Vet Microbiol , vol.143 , Issue.2-4 , pp. 224-237
    • Virmani, N.1    Bera, B.C.2    Singh, B.K.3    Shanmugasundaram, K.4    Gulati, B.R.5    Barua, S.6    Vaid, R.K.7    Gupta, A.K.8    Singh, R.K.9
  • 36
    • 0023915219 scopus 로고
    • Structure of the influenza virus haemagglutinin complexed with its receptor, sialic acid
    • doi:10.1038/333426a0
    • Weis W, Brown JH, Cusack S, Paulson JC, Skehel JJ, Wiley DC (1988) Structure of the influenza virus haemagglutinin complexed with its receptor, sialic acid. Nature 333(6172):426-431, doi:10.1038/333426a0
    • (1988) Nature , vol.333 , Issue.6172 , pp. 426-431
    • Weis, W.1    Brown, J.H.2    Cusack, S.3    Paulson, J.C.4    Skehel, J.J.5    Wiley, D.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.