Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes

Ecology Letters

Volumn 16, Issue 6, 2013, Pages 791-798

  Bernhardsson, Carolina ^a,c   Robinson, Kathryn M ^a,c   Abreu, Ilka N ^a,c   Jansson, Stefan ^a   Albrectsen, Benedicte R ^a,b   Ingvarsson, Pär K ^a  

^a Umea Plant Science Center   (Sweden)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Geographic structure association; Herbivore community traits; Maladaptation of herbivores; Phenotypic association; Plant herbivore interaction; Populus tremula; Untargeted metabolic profiling

Indexed keywords

HEXAPODA; POPULUS; POPULUS TREMULA;

EID: 84931749061     PISSN: 1461023X     EISSN: 14610248     Source Type: Journal    
DOI: 10.1111/ele.12114     Document Type: Article

References (50)

1. Albrectsen, B.R., Björkén, L., Varad, A., Hagner, Å., Wedin, M., Karlsson, J. et al. (2010a). Endophytic fungi in European aspen (Populus tremula) leaves - diversity, detection, and a suggested correlation with herbivory resistance. Fungal Divers., 41, 17-28.
2. Albrectsen, B.R., Witzell, J., Robinson, K.M., Wulff, S., Luquez, V.M.C., Ågren, R. et al. (2010b). Large scale geographic clines of parasite damage to Populus tremula. Ecography, 33, 483-493.
3. Bangert, R.K., Allan, G.J., Turek, R.J., Wimp, G.M., Meneses, N., Martinsen, G.D. et al. (2006). From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales. Mol. Ecol., 15, 4215-4228.
4. Barbour, R.C., O'Reilly-Wapstra, J.M., De Little, D.W., Jordan, G.J., Steane, D.A., Humphreys, J.R. et al. (2009). A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences. Ecology, 90, 1762-1772.
5. Bernhardsson, C. & Ingvarsson, P.K. (2012). Geographical structure and adaptive population differentiation in herbivore defence genes in European aspen (Populus tremula L., Salicaceae). Mol. Ecol., 21, 2197-2207.
6. Bray, J. & Curtis, J. (1957). An ordination of the upland forest communities of southern Wisconsin. Ecol. Monogr., 27, 326-349.
7. Campos, R.I., Vasconcelos, H.L., Ribeiro, S.P., Neves, F.S. & Soares, J.P. (2006). Relationship between tree size and insect assemblages associated with Anadenanthera macrocarpa. Ecography, 29, 442-450.
8. De Carvalho, D.D., Ingvarsson, P.K., Joseph, J., Suter, L., Sedivy, C., Macaya-Sanz, D. et al. (2010). Admixture facilitates adaptation from standing variation in the European aspen (Populus tremula L.), a widespread forest tree. Mol. Ecol., 19, 1638-1650.
9. Evans, L.M., Allan, G.J., Shuster, S.M., Woolbright, S.A. & Whitham, T.G. (2008). Tree hybridization and genotypic variation drive cryptic speciation of a specialist mite herbivore. Evolution, 62, 3027-3040.
10. Gandon, S., Capowiez, Y., Dubois, Y., Michalakis, Y. & Olivieri, I. (1996). Local adaptation and gene-for-gene coevolution in a metapopulation model. Proc. R. Soc. Lond. B, 263, 1003-1009.
11. Gelman, A., Carlin, J.B., Stern, H.S. & Rubin, D.B. (2004). Bayesian Data Analysis. Chapman & Hall/CRC, Boca Raton, FL.
12. Hadfield, J.D., Wilson, A.J., Garant, D., Sheldon, B.C. & Kruuk, L.E.B. (2010). The misuse of BLUP in ecology and evolution. Am. Nat., 175, 116-125.
13. Hall, D., Luquez, V., Garcia, V.M., Onge, K.R.S., Jansson, S. & Ingvarsson, P.K. (2007). Adaptive population differentiation in phenology across a latitudinal gradient in European aspen (Populus tremula, L.): a comparison of neutral markers, candidate genes and phenotypic traits. Evolution, 61, 2849-2860.
14. Hoeksema, J.D. & Forde, S.E. (2008). A meta-analysis of factors affecting local adaptation between interacting species. Am. Nat., 171, 275-290.
15. Ingvarsson, P.K., Garcia, M.V., Luquez, V., Hall, D. & Jansson, S. (2008). Nucleotide polymorphism and phenotypic associations within and around the phytochrome B2 locus in European aspen (Populus tremula, Salicaceae). Genetics, 178, 2217-2226.
16. Jansen, J.J., Allwood, J.W., Marsden-Edwards, E., van der Putten, W.H., Goodacre, R. & van Dam, N.M. (2009). Metabolomic analysis of the interaction between plants and herbivores RID C-3707-2011 RID B-3281-2008. Metabolomics, 5, 150-161.
17. Jonsson, P., Johansson, A., Gullberg, J., Trygg, J., Jiye, A., Grung, B. et al. (2005). High-throughput data analysis for detecting and identifying differences between samples in GC/MS-based metabolomic analyses. Anal. Chem., 77, 5635-5642.
18. Kaltz, O. & Shykoff, J.A. (1998). Local adaptation in host-parasite systems. Heredity, 81, 361-370.
19. Karban, R. (2011). The ecology and evolution of induced resistance against herbivores. Funct. Ecol., 25, 339-347.
20. Karban, R. & Baldwin, I.T. (1997). Induced Responses to Herbivory. University of Chicago Press, Chicago, IL.
21. Keith, A.R., Bailey, J.K. & Whitham, T.G. (2010). A genetic basis to community repeatability and stability. Ecology, 91, 3398-3406.
22. Kempel, A., Schädler, M., Chrobock, T., Fischer, M. & van Kleunen, M. (2011). Tradeoffs associated with constitutive and induced plant resistance against herbivory. PNAS, 108, 5685-5689.
23. Kniskern, J. & Rausher, M. (2001). Two modes of host-enemy coevolution. Popul. Ecol., 43, 3-14.
24. Konieczny, A. & Ausubel, F. (1993). A procedure for mapping arabidopsis mutations using codominant ecotype-specific PCR-based markers. Plant J., 4, 403-410.
25. Le Corre, V. & Kremer, A. (2003). Genetic variability at neutral markers, quantitative trait loci and trait in a subdivided population under selection. Genetics, 164, 1205-1219.
26. Linhart, Y.B. & Grant, M.C. (1996). Evolutionary significance of local genetic differentiation in plants. Annu. Rev. Ecol. Syst., 27, 237-277.
27. Luquez, V., Hall, D., Albrectsen, B., Karlsson, J., Ingvarsson, P. & Jansson, S. (2008). Natural phenological variation in aspen (Populus tremula): the SwAsp collection. Tree Genet. Genomes, 4, 279-292.
28. Lynch, M. & Walsh, B. (1998). Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA.
29. Ma, X-F., Hall, D., St. Onge, K.R., Jansson, S. & Ingvarsson, P.K. (2010). Genetic differentiation, clinal variation and phenotypic associations with growth cessation across the Populus tremula photoperiodic pathway. Genetics, 186, 1033-1044.
30. Magee, L. (1990). R2 measures based on wald and likelihood ratio joint significance tests. Am. Stat., 44, 250-253.
31. Mopper, S. & Strauss, S.Y. (eds). (1997). Genetic Structure and Local Adaptation in Natural Insect Populations: Effects Of Ecology, Life History, and Behavior, 1st edn. Springer, New York, NY.
32. Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., Minchin, P.R., O'Hara, R.B. et al. (2012). vegan: community ecology package. R, package version, 2 0-2. Available at: http://cran.r-project.org/web/packages/vegan/index.html
33. Parker, J., Burkepile, D. & Hay, M. (2006). Opposing effects of native and exotic herbivores on plant invasions. Science, 311, 1459-1461.
34. Peeters, P.J. (2002). Correlations between leaf structural traits and the densities of herbivorous insect guilds. Biol. J. Linn. Soc., 77, 43-65.
35. Pinheiro, J.C. & Bates, D.M. (2000). Mixed Effects Models in S and S-Plus. Springer, New York, NY.
36. Plummer, M., Best, N., Cowles, K. & Vines, K. (2006). CODA: convergence diagnosis and output analysis for MCMC. R News, 6, 7-11.
37. Robinson, K.M., Ingvarsson, P.K., Jansson, S. & Albrectsen, B.R. (2012). Genetic variation in functional traits influences arthropod community composition in aspen (Populus tremula L.). PLoS ONE, 7, e37679.
38. Shuster, S.M., Lonsdorf, E.V., Wimp, G.M., Bailey, J.K. & Whitham, T.G. (2006). Community heritability measures the evolutionary consequences of indirect genetic effects on community structure. Evolution, 60, 991-1003.
39. Stamp, N. (2003). Out of the quagmire of plant defense hypotheses. Q. Rev. Biol., 78, 23-55.
40. Storey, J.D. & Tibshirani, R. (2003). Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA, 100, 9440-9445.
41. Sun, G., Zhu, C., Kramer, M.H., Yang, S.-S., Song, W., Piepho, H.-P. et al. (2010). Variation explained in mixed-model association mapping. Heredity, 105, 333-340.
42. Thompson, J.N. (2005). The Geographic Mosaic of Coevolution. University of Chicago Press, Chicago, IL.
43. Verhoeven, K.J.F., Biere, A., Harvey, J.A. & Van Der Putten, W.H. (2009). Plant invaders and their novel natural enemies: who is naïve? Ecol. Lett., 12, 107-117.
44. Whitham, T.G., Bailey, J.K., Schweitzer, J.A., Shuster, S.M., Bangert, R.K., LeRoy, C.J. et al. (2006). A framework for community and ecosystem genetics: from genes to ecosystems. Nat. Rev. Genet., 7, 510-523.
45. Wimp, G., Martinsen, G., Floate, K., Bangert, R. & Whitham, T. (2005). Plant genetic determinants of arthropod community structure and diversity. Evolution, 59, 61-69.
46. Witzell, J. & Martin, J.A. (2008). Phenolic metabolites in the resistance of northern forest trees to pathogens - past experiences and future prospects. Can. J. For. Res.-Rev. Can. Rech. For., 38, 2711-2727.
47. Yeaman, S. & Otto, S.P. (2011). Establishment and maintenance of adaptive genetic divergence under migration, selection, and drift. Evolution, 65, 2123-2129.
48. Yu, J., Pressoir, G., Briggs, W.H., Vroh Bi, I., Yamasaki, M., Doebley, J.F. et al. (2006). A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet., 38, 203-208.
49. Zapala, M.A. & Schork, N.J. (2006). Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables. PNAS, 103, 19430-19435.
50. Züst, T., Heichinger, C., Grossniklaus, U., Harrington, R., Kliebenstein, D.J. & Turnbul, L.A. (2012). atural enemies drive geographic variation in plant defenses. Science, 338, 116-119.