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Volumn 22, Issue 3, 2014, Pages 193-203

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

Author keywords

chickpea; NGS; QTL; QTL seq; SNP

Indexed keywords

COP9 SIGNALOSOME; MICROSATELLITE DNA; VEGETABLE PROTEIN;

EID: 84931060799     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsv004     Document Type: Article
Times cited : (142)

References (76)
  • 1
    • 33646439701 scopus 로고    scopus 로고
    • Two major genes for seed size in chickpea (Cicer arietinum L.)
    • Upadhyaya, H.D., Kumar, S., Gowda, C.L.L. and Singh, S. 2006, Two major genes for seed size in chickpea (Cicer arietinum L.), Euphytica, 147, 311-15.
    • (2006) Euphytica , vol.147 , pp. 311-315
    • Upadhyaya, H.D.1    Kumar, S.2    Gowda, C.L.L.3    Singh, S.4
  • 2
    • 78650433989 scopus 로고    scopus 로고
    • Identification of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement
    • Gowda, C.L.L., Upadhyaya, H.D., Dronavalli, N. and Singh, S. 2011, Identification of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement, Crop Sci., 51, 198-209.
    • (2011) Crop Sci , vol.51 , pp. 198-209
    • Gowda, C.L.L.1    Upadhyaya, H.D.2    Dronavalli, N.3    Singh, S.4
  • 3
    • 0036444884 scopus 로고    scopus 로고
    • Mapping genes for double podding and other morphological traits in chickpea
    • Cho, S., Kumar, J., Shultz, J.F., Anupama, K., Tefera, F. and Muehlbauer, F. J. 2002, Mapping genes for double podding and other morphological traits in chickpea, Euphytica, 125, 285-92.
    • (2002) Euphytica , vol.125 , pp. 285-292
    • Cho, S.1    Kumar, J.2    Shultz, J.F.3    Anupama, K.4    Tefera, F.5    Muehlbauer, F.J.6
  • 4
    • 0042203714 scopus 로고    scopus 로고
    • DAF marker tightly linked to a major locus for Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Rakshit, S., Winter, P., Tekeoglu, M., et al. 2003, DAF marker tightly linked to a major locus for Ascochyta blight resistance in chickpea (Cicer arietinum L.), Euphytica, 132, 23-30.
    • (2003) Euphytica , vol.132 , pp. 23-30
    • Rakshit, S.1    Winter, P.2    Tekeoglu, M.3
  • 5
    • 18844428094 scopus 로고    scopus 로고
    • Linkage map of chickpea (Cicer arietinum L.) based on populations from kabuli × desi crosses: Location of genes for resistance to Fusarium wilt race 0
    • Cobos, M.J., Fernandez, M., Rubio, J., et al. 2005, Linkage map of chickpea (Cicer arietinum L.) based on populations from kabuli × desi crosses: location of genes for resistance to Fusarium wilt race 0, Theor. Appl. Genet., 110, 1347-53.
    • (2005) Theor. Appl. Genet , vol.110 , pp. 1347-1353
    • Cobos, M.J.1    Fernandez, M.2    Rubio, J.3
  • 6
    • 33745714430 scopus 로고    scopus 로고
    • A new QTL for Ascochyta blight resistance in an RIL population derived from an interspecific cross in chickpea
    • Cobos, M., Rubio, J., Strange, R.N., Moreno, M.T., Gil, J. and Millán, T. 2006, A new QTL for Ascochyta blight resistance in an RIL population derived from an interspecific cross in chickpea, Euphytica, 149, 105-11.
    • (2006) Euphytica , vol.149 , pp. 105-111
    • Cobos, M.1    Rubio, J.2    Strange, R.N.3    Moreno, M.T.4    Gil, J.5    Millán, T.6
  • 7
    • 58749090349 scopus 로고    scopus 로고
    • Genetic analysis of agronomic traits in a wide cross of chickpea
    • Cobos, M.J., Winter, P., Kharrat, M., et al. 2009, Genetic analysis of agronomic traits in a wide cross of chickpea, Field Crop Res., 111, 130-6.
    • (2009) Field Crop Res , vol.111 , pp. 130-136
    • Cobos, M.J.1    Winter, P.2    Kharrat, M.3
  • 8
    • 33750036374 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in chickpea associated with time to flowering and resistance to Didymella rabiei the causal agent of Ascochyta blight
    • Lichtenzveig, J., Bonfil, D.J., Zhang, H.B., Shtienberg, D. and Abbo, S. 2006, Mapping quantitative trait loci in chickpea associated with time to flowering and resistance to Didymella rabiei the causal agent of Ascochyta blight, Theor. Appl. Genet., 113, 1357-69.
    • (2006) Theor. Appl. Genet , vol.113 , pp. 1357-1369
    • Lichtenzveig, J.1    Bonfil, D.J.2    Zhang, H.B.3    Shtienberg, D.4    Abbo, S.5
  • 9
    • 34347349067 scopus 로고    scopus 로고
    • Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations
    • Radhika, P., Gowda, S.J.M., Kadoo, N.Y., et al. 2007, Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations, Theor. Appl. Genet., 115, 209-16.
    • (2007) Theor. Appl. Genet , vol.115 , pp. 209-216
    • Radhika, P.1    Gowda, S.J.M.2    Kadoo, N.Y.3
  • 10
    • 34249983936 scopus 로고    scopus 로고
    • Genetic mapping of Ascochyta blight resistance in chickpea (Cicer arietinum) using a simple sequence repeat linkage map
    • Tar'an, B., Warkentin, T.D., Tullu, A. and Vanderberg, A. 2007, Genetic mapping of Ascochyta blight resistance in chickpea (Cicer arietinum) using a simple sequence repeat linkage map, Genome, 50, 26-34.
    • (2007) Genome , vol.50 , pp. 26-34
    • Tar'An, B.1    Warkentin, T.D.2    Tullu, A.3    Vanderberg, A.4
  • 11
    • 41549165277 scopus 로고    scopus 로고
    • Mechanism and molecular markers associated with rust resistance in a chickpea interspecific cross (Cicer arietinum × Cicer reticulatum)
    • Madrid, E., Rubiales, D., Moral, A., et al. 2008, Mechanism and molecular markers associated with rust resistance in a chickpea interspecific cross (Cicer arietinum × Cicer reticulatum), Eur. J. Plant. Pathol., 121, 43-53.
    • (2008) Eur. J. Plant. Pathol , vol.121 , pp. 43-53
    • Madrid, E.1    Rubiales, D.2    Moral, A.3
  • 12
    • 68349125552 scopus 로고    scopus 로고
    • Genetic analyses and conservation of QTL for Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Anbessa, Y., Taran, B., Warkentin, T.D., Tullu, A. and Vandenberg, A. 2009, Genetic analyses and conservation of QTL for Ascochyta blight resistance in chickpea (Cicer arietinum L.), Theor. Appl. Genet., 119, 757-65.
    • (2009) Theor. Appl. Genet , vol.119 , pp. 757-765
    • Anbessa, Y.1    Taran, B.2    Warkentin, T.D.3    Tullu, A.4    Vandenberg, A.5
  • 14
    • 79951855458 scopus 로고    scopus 로고
    • Mapping QTL for resistance to Botrytis grey mould in chickpea
    • Anuradha, C., Gaur, P.M., Pande, S., et al. 2011, Mapping QTL for resistance to Botrytis grey mould in chickpea, Euphytica, 182, 1-9.
    • (2011) Euphytica , vol.182 , pp. 1-9
    • Anuradha, C.1    Gaur, P.M.2    Pande, S.3
  • 15
    • 77953326729 scopus 로고    scopus 로고
    • Mapping a major gene for growth habit and QTLs for Ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum
    • Aryamanesh, N., Nelson, M.N., Yan, G., Clarke, H.J. and Siddique, K.H. M. 2010, Mapping a major gene for growth habit and QTLs for Ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum, Euphytica, 173, 307-19.
    • (2010) Euphytica , vol.173 , pp. 307-319
    • Aryamanesh, N.1    Nelson, M.N.2    Yan, G.3    Clarke, H.J.4    Siddique, K.H.M.5
  • 16
    • 78650433989 scopus 로고    scopus 로고
    • Identification of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement
    • Gowda, C.L.L., Upadhyaya, H.D., Dronavalli, N. and Singh, S. 2011, Identification of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement, Crop Sci., 5, 198-209.
    • (2011) Crop Sci , vol.5 , pp. 198-209
    • Gowda, C.L.L.1    Upadhyaya, H.D.2    Dronavalli, N.3    Singh, S.4
  • 17
    • 79957887475 scopus 로고    scopus 로고
    • Towards marker-assisted selection in pulses: A review
    • Kumar, A., Choudhary, A.K., Solanki, R.K. and Pratap, A. 2011, Towards marker-assisted selection in pulses: a review, Plant Breed., 130, 297-313.
    • (2011) Plant Breed , vol.130 , pp. 297-313
    • Kumar, A.1    Choudhary, A.K.2    Solanki, R.K.3    Pratap, A.4
  • 18
    • 79952475775 scopus 로고    scopus 로고
    • Mapping QTL associated with traits affecting grain yield in chickpea (Cicer arietinum L.) under terminal drought stress
    • Rehman, A.U., Malhotra, R.S., Bett, K., Tar'an, B., Bueckert, R. and Warkentin, T.D. 2011, Mapping QTL associated with traits affecting grain yield in chickpea (Cicer arietinum L.) under terminal drought stress, Crop Sci., 51, 450-63.
    • (2011) Crop Sci , vol.51 , pp. 450-463
    • Rehman, A.U.1    Malhotra, R.S.2    Bett, K.3    Tar'An, B.4    Bueckert, R.5    Warkentin, T.D.6
  • 19
    • 84861738658 scopus 로고    scopus 로고
    • Assessment of ICCV2 × JG62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components
    • Vadez, V., Krishnamurthy, L., Thudi, M., et al. 2012, Assessment of ICCV2 × JG62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components, Mol. Breed., 30, 9-21.
    • (2012) Mol. Breed , vol.30 , pp. 9-21
    • Vadez, V.1    Krishnamurthy, L.2    Thudi, M.3
  • 20
    • 84884190218 scopus 로고    scopus 로고
    • Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping
    • Kujur, A., Bajaj, D., Saxena, M.S., et al. 2013, Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping, DNA Res., 20, 355-74.
    • (2013) DNA Res , vol.20 , pp. 355-374
    • Kujur, A.1    Bajaj, D.2    Saxena, M.S.3
  • 21
    • 84901348264 scopus 로고    scopus 로고
    • An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: Identification of candidate genes for seed weight in chickpea
    • Kujur, A., Bajaj, D., Saxena, M.S., et al. 2014, An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea, Mol. Breed., 34, 241-65.
    • (2014) Mol. Breed , vol.34 , pp. 241-265
    • Kujur, A.1    Bajaj, D.2    Saxena, M.S.3
  • 22
    • 84881554353 scopus 로고    scopus 로고
    • Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)
    • Sabbavarapu, M.M., Sharma, M., Chamarthi, S.K., et al. 2013, Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.), Euphytica, 193, 121-33.
    • (2013) Euphytica , vol.193 , pp. 121-133
    • Sabbavarapu, M.M.1    Sharma, M.2    Chamarthi, S.K.3
  • 23
    • 84907169665 scopus 로고    scopus 로고
    • Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway
    • Ali, L., Madrid, E., Varshney, R.K., et al. 2014, Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway, Theor. Appl. Genet., 127, 481-8.
    • (2014) Theor. Appl. Genet , vol.127 , pp. 481-488
    • Ali, L.1    Madrid, E.2    Varshney, R.K.3
  • 24
    • 84922450139 scopus 로고    scopus 로고
    • An integrated genomic approach for rapid delineation of candidate genes regulating agromorphological traits in chickpea
    • Saxena, M.S., Bajaj, D., Das, S., et al. 2014, An integrated genomic approach for rapid delineation of candidate genes regulating agromorphological traits in chickpea, DNA Res., 21, 695-710.
    • (2014) DNA Res , vol.21 , pp. 695-710
    • Saxena, M.S.1    Bajaj, D.2    Das, S.3
  • 25
    • 84890872120 scopus 로고    scopus 로고
    • Genetic marker discovery intraspecific linkage map construction and quantitative trait locus analysis of Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Stephens, A., Lombardi, M., Cogan, N.O.I., et al. 2014, Genetic marker discovery, intraspecific linkage map construction and quantitative trait locus analysis of Ascochyta blight resistance in chickpea (Cicer arietinum L.), Mol. Breed, 33, 297-313.
    • (2014) Mol. Breed , vol.33 , pp. 297-313
    • Stephens, A.1    Lombardi, M.2    Cogan, N.O.I.3
  • 26
    • 84887989292 scopus 로고    scopus 로고
    • Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics
    • Varshney, R.K., Murali Mohan, S., Gaur, P.M., et al. 2013, Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics, Biotechnol. Adv., 31, 1120-34.
    • (2013) Biotechnol. Adv , vol.31 , pp. 1120-1134
    • Varshney, R.K.1    Murali Mohan, S.2    Gaur, P.M.3
  • 27
    • 84900445403 scopus 로고    scopus 로고
    • Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
    • Varshney, R.K., Thudi, M., Nayak, S.N., et al. 2014, Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.), Theor. Appl. Genet., 127, 445-62.
    • (2014) Theor. Appl. Genet , vol.127 , pp. 445-462
    • Varshney, R.K.1    Thudi, M.2    Nayak, S.N.3
  • 28
    • 84890711827 scopus 로고    scopus 로고
    • Fast-track introgression of "qTL-hotspot" for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.)
    • Varshney, R.K., Gaur, P.M., Chamarthi, S.K., et al. 2013, Fast-track introgression of "QTL-hotspot" for root traits and other drought tolerance trait in JG 11, an elite and leading variety of chickpea (Cicer arietinum L.), Plant Genome, 6, 1-26.
    • (2013) Plant Genome , vol.6 , pp. 1-26
    • Varshney, R.K.1    Gaur, P.M.2    Chamarthi, S.K.3
  • 29
    • 84897377529 scopus 로고    scopus 로고
    • Marker-assisted backcrossing to introgress resistance to Fusarium wilt race 1 and Ascochyta blight in C214 an elite cultivar of chickpea
    • Varshney, R.K., Mohan, S.M., Gaur, P.M., et al. 2014, Marker-assisted backcrossing to introgress resistance to Fusarium wilt race 1 and Ascochyta blight in C214, an elite cultivar of chickpea, Plant Genome, 7, 1-11.
    • (2014) Plant Genome , vol.7 , pp. 1-11
    • Varshney, R.K.1    Mohan, S.M.2    Gaur, P.M.3
  • 30
    • 84863564349 scopus 로고    scopus 로고
    • Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
    • Hiremath, P.J., Kumar, A., Penmetsa, R.V., et al. 2012, Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes, Plant Biotechnol. J., 10, 716-32.
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 716-732
    • Hiremath, P.J.1    Kumar, A.2    Penmetsa, R.V.3
  • 31
    • 84867714759 scopus 로고    scopus 로고
    • High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.)
    • Gaur, R., Azam, S., Jeena, G., et al. 2012, High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.), DNA Res., 19, 357-73.
    • (2012) DNA Res , vol.19 , pp. 357-373
    • Gaur, R.1    Azam, S.2    Jeena, G.3
  • 32
    • 84883746158 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform
    • Roorkiwal, M., Sawargaonkar, S.L., Chitikineni, A., et al. 2013, Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform, Plant Genome, 6, 1-10.
    • (2013) Plant Genome , vol.6 , pp. 1-10
    • Roorkiwal, M.1    Sawargaonkar, S.L.2    Chitikineni, A.3
  • 33
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • Elshire, R.J., Glaubitz, J.C., Sun, Q., et al. 2011, A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species, PLoS ONE, 6, e19379.
    • (2011) PLoS ONE , vol.6 , pp. e19379
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3
  • 34
    • 84857520461 scopus 로고    scopus 로고
    • Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
    • Poland, J.A., Brown, P.J., Sorrells, M.E. and Jannink, J.L. 2012, Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach, PLoS ONE, 7, e32253.
    • (2012) PLoS ONE , vol.7 , pp. e32253
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.L.4
  • 35
    • 84875444971 scopus 로고    scopus 로고
    • Genotyping-by-sequencing for plant breeding and genetics
    • Poland, J.A. and Rife, T.W. 2012, Genotyping-by-sequencing for plant breeding and genetics, Plant Genome, 5, 92-102.
    • (2012) Plant Genome , vol.5 , pp. 92-102
    • Poland, J.A.1    Rife, T.W.2
  • 36
    • 84876367781 scopus 로고    scopus 로고
    • Marker density and read depth for genotyping populations using genotyping-by-sequencing
    • Beissinger, T.M., Hirsch, C.N., Sekhon, R.S., et al. 2013, Marker density and read depth for genotyping populations using genotyping-by-sequencing, Genetics, 193, 1073-81.
    • (2013) Genetics , vol.193 , pp. 1073-1081
    • Beissinger, T.M.1    Hirsch, C.N.2    Sekhon, R.S.3
  • 37
    • 84889073191 scopus 로고    scopus 로고
    • Genomic prediction in maize breeding populations with genotyping-by-sequencing
    • Crossa, J., Beyene, Y., Kassa, S., et al. 2013, Genomic prediction in maize breeding populations with genotyping-by-sequencing, G3 (Bethesda), 3, 1903-26.
    • (2013) G3 (Bethesda) , vol.3 , pp. 1903-1926
    • Crossa, J.1    Beyene, Y.2    Kassa, S.3
  • 38
    • 84872789979 scopus 로고    scopus 로고
    • An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping
    • Sonah, H., Bastien, M., Iquira, E., et al. 2013, An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping, PLoS ONE, 8, e54603.
    • (2013) PLoS ONE , vol.8 , pp. e54603
    • Sonah, H.1    Bastien, M.2    Iquira, E.3
  • 39
    • 84887613153 scopus 로고    scopus 로고
    • Bridging the genotyping gap: Using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations
    • Spindel, J., Wright, M., Chen, C., et al. 2013, Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations, Theor. Appl. Genet., 126, 2699-716.
    • (2013) Theor. Appl. Genet , vol.126 , pp. 2699-2716
    • Spindel, J.1    Wright, M.2    Chen, C.3
  • 40
    • 84925483131 scopus 로고    scopus 로고
    • Genotyping-by-sequencing based intra-specific genetic map refines a "qTL-hotspot" region for drought tolerance in chickpea
    • Jaganathan, D., Thudi, M., Kale, S., et al. 2014, Genotyping-by-sequencing based intra-specific genetic map refines a "QTL-hotspot" region for drought tolerance in chickpea, Mol. Genet. Genomics, 290, 559-71.
    • (2014) Mol. Genet. Genomics , vol.290 , pp. 559-571
    • Jaganathan, D.1    Thudi, M.2    Kale, S.3
  • 41
    • 84893160089 scopus 로고    scopus 로고
    • An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley
    • Liu, H., Bayer, M., Druka, A., et al. 2014, An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley, BMC Genomics, 15, 104.
    • (2014) BMC Genomics , vol.15 , pp. 104
    • Liu, H.1    Bayer, M.2    Druka, A.3
  • 42
    • 84875371696 scopus 로고    scopus 로고
    • QTL-seq: Rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
    • Takagi, H., Abe, A., Yoshida, K., et al. 2013, QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations, Plant J., 74, 174-83.
    • (2013) Plant J. , vol.74 , pp. 174-183
    • Takagi, H.1    Abe, A.2    Yoshida, K.3
  • 43
    • 84925555084 scopus 로고    scopus 로고
    • QTL-seq identifies an early flowering QTL located near flowering locus T in cucumber
    • Lu, H., Lin, T., Klein, J., et al. 2014, QTL-seq identifies an early flowering QTL located near flowering locus T in cucumber, Theor. Appl. Genet., 127, 1491-9.
    • (2014) Theor. Appl. Genet , vol.127 , pp. 1491-1499
    • Lu, H.1    Lin, T.2    Klein, J.3
  • 44
    • 84878341271 scopus 로고    scopus 로고
    • A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)
    • Jain, M., Misra, G., Patel, R.K., et al. 2013, A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.), Plant J., 74, 715-29.
    • (2013) Plant J. , vol.74 , pp. 715-729
    • Jain, M.1    Misra, G.2    Patel, R.K.3
  • 45
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.L. 2012, Fast gapped-read alignment with Bowtie 2, Nat. Methods, 9, 357-9.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 46
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. 2009, Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, 25, 1754-60.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 47
    • 84856736515 scopus 로고    scopus 로고
    • Genome sequencing reveals agronomically important loci in rice using MutMap
    • Abe, A., Kosugi, S., Yoshida, K., et al. 2012, Genome sequencing reveals agronomically important loci in rice using MutMap, Nat. Biotechnol., 30, 174-8.
    • (2012) Nat. Biotechnol , vol.30 , pp. 174-178
    • Abe, A.1    Kosugi, S.2    Yoshida, K.3
  • 48
    • 84865299428 scopus 로고    scopus 로고
    • SNPs in stress-responsive rice genes: Validation genotyping, functional relevance and population structure
    • Parida, S.K., Mukerji, M., Singh, A.K., Singh, N.K. and Mohapatra, T. 2012, SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure, BMC Genomics, 13, 426.
    • (2012) BMC Genomics , vol.13 , pp. 426
    • Parida, S.K.1    Mukerji, M.2    Singh, A.K.3    Singh, N.K.4    Mohapatra, T.5
  • 49
    • 0032877640 scopus 로고    scopus 로고
    • Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome
    • Winter, P., Pfaff, T., Udupa, S.M., et al. 1999, Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome, Mol. Gen. Genet., 262, 90-101.
    • (1999) Mol. Gen. Genet , vol.262 , pp. 90-101
    • Winter, P.1    Pfaff, T.2    Udupa, S.M.3
  • 50
    • 0033694577 scopus 로고    scopus 로고
    • A linkage map of chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. Arietinum × C. Reticulatum cross: Localization of resistance genes for Fusarium wilt races 4 and 5
    • Winter, P., Benko-Iseppon, A.M., Hüttel, B., et al. 2000, A linkage map of chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum × C. reticulatum cross: localization of resistance genes for Fusarium wilt races 4 and 5, Theor. Appl. Genet., 101, 1155-63.
    • (2000) Theor. Appl. Genet , vol.101 , pp. 1155-1163
    • Winter, P.1    Benko-Iseppon, A.M.2    Hüttel, B.3
  • 51
    • 84863143122 scopus 로고    scopus 로고
    • Current state-of-art of sequencing technologies for plant genomics research
    • Thudi, M., Li, Y., Jackson, S.A., May, G.D. and Varshney, R.K. 2012, Current state-of-art of sequencing technologies for plant genomics research, Brief Funct. Genomics, 11, 3-11.
    • (2012) Brief Funct. Genomics , vol.11 , pp. 3-11
    • Thudi, M.1    Li, Y.2    Jackson, S.A.3    May, G.D.4    Varshney, R.K.5
  • 52
    • 84863567245 scopus 로고    scopus 로고
    • Transcriptome sequencing of wild chickpea as a rich resource for marker development
    • Jhanwar, S., Priya, P., Garg, R., Parida, S.K., Tyagi, A.K. and Jain, M. 2012, Transcriptome sequencing of wild chickpea as a rich resource for marker development, Plant Biotechnol. J., 10, 690-702.
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 690-702
    • Jhanwar, S.1    Priya, P.2    Garg, R.3    Parida, S.K.4    Tyagi, A.K.5    Jain, M.6
  • 53
    • 77953129466 scopus 로고    scopus 로고
    • Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of newanchor points with Medicago truncatula genome
    • Nayak, S.N., Zhu, H., Varghese, N., et al. 2010, Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of newanchor points with Medicago truncatula genome, Theor. Appl. Genet., 120, 1415-41.
    • (2010) Theor. Appl. Genet , vol.120 , pp. 1415-1441
    • Nayak, S.N.1    Zhu, H.2    Varghese, N.3
  • 54
    • 79951584055 scopus 로고    scopus 로고
    • Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.)
    • Gaur, R., Sethy, N.K., Choudhary, S., Shokeen, B., Gupta, V. and Bhatia, S. 2011, Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.), BMC Genomics, 12, 117.
    • (2011) BMC Genomics , vol.12 , pp. 117
    • Gaur, R.1    Sethy, N.K.2    Choudhary, S.3    Shokeen, B.4    Gupta, V.5    Bhatia, S.6
  • 55
    • 84860612585 scopus 로고    scopus 로고
    • Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1, 291 marker loci for chickpea (Cicer arietinum L.)
    • Thudi, M., Bohra, A., Nayak, S.N., et al. 2011, Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1, 291 marker loci for chickpea (Cicer arietinum L.), PLoS ONE, 6, e27275.
    • (2011) PLoS ONE , vol.6 , pp. e27275
    • Thudi, M.1    Bohra, A.2    Nayak, S.N.3
  • 56
    • 84930472856 scopus 로고    scopus 로고
    • Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers
    • Choudhary, P., Khanna, S.M., Jain, P.K., et al. 2012, Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers, Genet. Mol. Res., 11, 891-905.
    • (2012) Genet. Mol. Res , vol.11 , pp. 891-905
    • Choudhary, P.1    Khanna, S.M.2    Jain, P.K.3
  • 57
    • 80054123322 scopus 로고    scopus 로고
    • Arabidopsis CSLD1 and CSLD4 are required for cellulose deposition and normal growth of pollen tubes
    • Wang, W., Wang, L., Chen, C., et al. 2011, Arabidopsis CSLD1 and CSLD4 are required for cellulose deposition and normal growth of pollen tubes, J. Exp. Bot., 62, 5161-77.
    • (2011) J. Exp. Bot , vol.62 , pp. 5161-5177
    • Wang, W.1    Wang, L.2    Chen, C.3
  • 59
    • 84907185297 scopus 로고    scopus 로고
    • Natural allelic diversity genetic structure and linkage disequilibrium pattern in wild chickpea
    • Saxena, M.S., Bajaj, D., Kujur, A., et al. 2014, Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea, PLoS ONE, 9, e107484.
    • (2014) PLoS ONE , vol.9 , pp. e107484
    • Saxena, M.S.1    Bajaj, D.2    Kujur, A.3
  • 60
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. 2011, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 28, 2731-9.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 61
    • 0030832776 scopus 로고    scopus 로고
    • Heterogeneous inbred family (HIF) analysis: A method for developing near-isogenic lines that differ at quantitative trait loci
    • Tuinstra, M.R., Ejeta, G. and Goldsbrough, P.B. 1997, Heterogeneous inbred family (HIF) analysis: a method for developing near-isogenic lines that differ at quantitative trait loci, Theor. Appl. Genet., 95, 1005-11.
    • (1997) Theor. Appl. Genet , vol.95 , pp. 1005-1011
    • Tuinstra, M.R.1    Ejeta, G.2    Goldsbrough, P.B.3
  • 62
    • 0033658934 scopus 로고    scopus 로고
    • Development of a set of near isogenic and backcross recombinant inbred lines containing most of the Lycopersicon hirsutum genome in a L. Esculentum genetic background: A tool for gene mapping and gene discovery
    • Monforte, A.J. and Tanksley, S.D. 2000, Development of a set of near isogenic and backcross recombinant inbred lines containing most of the Lycopersicon hirsutum genome in a L. esculentum genetic background: a tool for gene mapping and gene discovery, Genome, 43, 803-13.
    • (2000) Genome , vol.43 , pp. 803-813
    • Monforte, A.J.1    Tanksley, S.D.2
  • 63
    • 15244350750 scopus 로고    scopus 로고
    • Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family
    • Loudet, O., Gaudon, V., Trubuil, A. andDaniel-Vedele, F. 2005, Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family, Theor. Appl. Genet., 110, 742-53.
    • (2005) Theor. Appl. Genet , vol.110 , pp. 742-753
    • Loudet, O.1    Gaudon, V.2    Trubuil, A.3    Daniel-Vedele, F.4
  • 64
    • 33645409862 scopus 로고    scopus 로고
    • GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
    • Fan, C., Xing, Y., Mao, H., et al. 2006, GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein, Theor. Appl. Genet., 112, 1164-71.
    • (2006) Theor. Appl. Genet , vol.112 , pp. 1164-1171
    • Fan, C.1    Xing, Y.2    Mao, H.3
  • 65
    • 78650601870 scopus 로고    scopus 로고
    • Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
    • Mao, H., Sun, S., Yao, J., et al. 2010, Linking differential domain functions of the GS3 protein to natural variation of grain size in rice, Proc. Natl Acad. Sci. USA, 107, 19579-84.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 19579-19584
    • Mao, H.1    Sun, S.2    Yao, J.3
  • 66
    • 82255192352 scopus 로고    scopus 로고
    • Natural variation in GS5 plays an important role in regulating grain size and yield in rice
    • Li, Y., Fan, C., Xing, Y., et al. 2011, Natural variation in GS5 plays an important role in regulating grain size and yield in rice, Nat. Genet., 43, 1266-70.
    • (2011) Nat. Genet , vol.43 , pp. 1266-1270
    • Li, Y.1    Fan, C.2    Xing, Y.3
  • 67
    • 84871843521 scopus 로고    scopus 로고
    • Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
    • Zhang, X., Wang, J., Huang, J., et al. 2012, Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice, Proc. Natl Acad. Sci. USA, 109, 21534-39.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 21534-21539
    • Zhang, X.1    Wang, J.2    Huang, J.3
  • 68
    • 84924348011 scopus 로고    scopus 로고
    • Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea
    • Bajaj, D., Saxena, M.S., Kujur, A., et al. 2015, Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea, J. Exp. Bot., 66, 1271-90.
    • (2015) J. Exp. Bot , vol.66 , pp. 1271-1290
    • Bajaj, D.1    Saxena, M.S.2    Kujur, A.3
  • 70
    • 77954669285 scopus 로고    scopus 로고
    • Inheritance of seed size in chickpea (Cicer arietinum L.) and identification of QTL based on 100-seed weight and seed size index
    • Hossain, S., Ford, R., McNeil, D., Pittock, C. and Panozzo, J.F. 2010, Inheritance of seed size in chickpea (Cicer arietinum L.) and identification of QTL based on 100-seed weight and seed size index, Aust. J. Crop Sci., 4, 126-35.
    • (2010) Aust. J. Crop Sci , vol.4 , pp. 126-135
    • Hossain, S.1    Ford, R.2    McNeil, D.3    Pittock, C.4    Panozzo, J.F.5
  • 71
    • 84900397393 scopus 로고    scopus 로고
    • Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches
    • Thudi, M., Upadhyaya, H.D. and Rathore, A. 2014, Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches, PloS ONE, 9, e96758.
    • (2014) PloS ONE , vol.9 , pp. e96758
    • Thudi, M.1    Upadhyaya, H.D.2    Rathore, A.3
  • 72
    • 0037480420 scopus 로고    scopus 로고
    • The COP9 signalosome: Regulating plant development through the control of proteolysis
    • Serino, G. and Deng, X.W. 2003, The COP9 signalosome: regulating plant development through the control of proteolysis, Annu. Rev. Plant. Biol., 54, 165-82.
    • (2003) Annu. Rev. Plant. Biol , vol.54 , pp. 165-182
    • Serino, G.1    Deng, X.W.2
  • 73
    • 77149153062 scopus 로고    scopus 로고
    • The COP9 signalosome and its role in plant development
    • Schwechheimer, C. and Isono, E. 2010, The COP9 signalosome and its role in plant development, Eur. J. Cell Biol., 89, 157-62.
    • (2010) Eur. J. Cell Biol , vol.89 , pp. 157-162
    • Schwechheimer, C.1    Isono, E.2
  • 74
    • 84865849716 scopus 로고    scopus 로고
    • SMALL ACIDIC PROTEIN1 acts with RUB modification components, the COP9 signalosome, and AXR1 to regulate growth and development of Arabidopsis
    • Nakasone, A., Fujiwara, M., Fukao, Y., et al. 2012, SMALL ACIDIC PROTEIN1 acts with RUB modification components, the COP9 signalosome, and AXR1 to regulate growth and development of Arabidopsis, Plant Physiol., 160, 93-105.
    • (2012) Plant Physiol , vol.160 , pp. 93-105
    • Nakasone, A.1    Fujiwara, M.2    Fukao, Y.3
  • 75
    • 84874625712 scopus 로고    scopus 로고
    • Incurvata13, a novel allele of AUXIN RESISTANT6, reveals a specific role for auxin and the SCF complex in Arabidopsis embryogenesis, vascular specification, and leaf flatness
    • Esteve-Bruna, D., Pérez-Pérez, J.M., Ponce, M.R. and Micol, J.L. 2013, incurvata13, a novel allele of AUXIN RESISTANT6, reveals a specific role for auxin and the SCF complex in Arabidopsis embryogenesis, vascular specification, and leaf flatness, Plant Physiol., 161, 1303-20.
    • (2013) Plant Physiol , vol.161 , pp. 1303-1320
    • Esteve-Bruna, D.1    Pérez-Pérez, J.M.2    Ponce, M.R.3    Micol, J.L.4
  • 76
    • 84885038670 scopus 로고    scopus 로고
    • The Arabidopsis COP9 SIGNALOSOME INTERACTING F-BOX KELCH 1 protein forms an SCF ubiquitin ligase and regulates hypocotyl elongation
    • Franciosini, A., Lombardi, B., Iafrate, S., et al. 2013, The Arabidopsis COP9 SIGNALOSOME INTERACTING F-BOX KELCH 1 protein forms an SCF ubiquitin ligase and regulates hypocotyl elongation, Mol. Plant, 6, 1616-29.
    • (2013) Mol. Plant , vol.6 , pp. 1616-1629
    • Franciosini, A.1    Lombardi, B.2    Iafrate, S.3


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