-
1
-
-
84865194855
-
Implementation of proteomic biomarkers: making it work
-
Mischak, H., Ioannidis, J. P., Argiles, A., Attwood, T. K. et al., Implementation of proteomic biomarkers: making it work. Eur. J. Clin. Invest. 2012, 42, 1027-1036.
-
(2012)
Eur. J. Clin. Invest.
, vol.42
, pp. 1027-1036
-
-
Mischak, H.1
Ioannidis, J.P.2
Argiles, A.3
Attwood, T.K.4
-
2
-
-
50849092540
-
CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
-
Coon, J. J., Zürbig, P., Dakna, M., Dominiczak, A. F. et al., CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics. Proteomics Clin. Appl. 2008, 2, 964-973.
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 964-973
-
-
Coon, J.J.1
Zürbig, P.2
Dakna, M.3
Dominiczak, A.F.4
-
3
-
-
78149291420
-
Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease
-
Good, D. M., Zürbig, P., Argiles, A., Bauer, H. W. et al., Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease. Mol. Cell Proteomics 2010, 9, 2424-2437.
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 2424-2437
-
-
Good, D.M.1
Zürbig, P.2
Argiles, A.3
Bauer, H.W.4
-
4
-
-
79251560313
-
CE-MS in biomarker discovery, validation, and clinical application
-
Mischak, H., Schanstra, J. P., CE-MS in biomarker discovery, validation, and clinical application. Proteomics Clin. Appl. 2011, 5, 9-23.
-
(2011)
Proteomics Clin. Appl.
, vol.5
, pp. 9-23
-
-
Mischak, H.1
Schanstra, J.P.2
-
5
-
-
84898599281
-
Urine as a source for clinical proteome analysis: from discovery to clinical application
-
Rodriguez-Suarez, E., Siwy, J., Zurbig, P., Mischak, H., Urine as a source for clinical proteome analysis: from discovery to clinical application. Biochim. Biophys. Acta 2014, 5, 884-898.
-
(2014)
Biochim. Biophys. Acta
, vol.5
, pp. 884-898
-
-
Rodriguez-Suarez, E.1
Siwy, J.2
Zurbig, P.3
Mischak, H.4
-
6
-
-
84871143909
-
Urine proteomic analysis differentiates cholangiocarcinoma from primary sclerosing cholangitis and other benign biliary disorders
-
Metzger, J., Negm, A. A., Plentz, R. R., Weismuller, T. J. et al., Urine proteomic analysis differentiates cholangiocarcinoma from primary sclerosing cholangitis and other benign biliary disorders. Gut 2013, 1, 122-130.
-
(2013)
Gut
, vol.1
, pp. 122-130
-
-
Metzger, J.1
Negm, A.A.2
Plentz, R.R.3
Weismuller, T.J.4
-
7
-
-
84875597573
-
A urinary peptide biomarker set predicts worsening of albuminuria in type 2 diabetes mellitus
-
Roscioni, S. S., de, Z. D., Hellemons, M. E., Mischak, H. et al., A urinary peptide biomarker set predicts worsening of albuminuria in type 2 diabetes mellitus. Diabetologia 2012, 56, 259-267.
-
(2012)
Diabetologia
, vol.56
, pp. 259-267
-
-
Roscioni, S.S.1
de, Z.D.2
Hellemons, M.E.3
Mischak, H.4
-
8
-
-
42449130178
-
Discovery and validation of urinary biomarkers for prostate cancer
-
Theodorescu, D., Schiffer, E., Bauer, H. W., Douwes, F. et al., Discovery and validation of urinary biomarkers for prostate cancer. Proteomics Clin. Appl. 2008, 2, 556-570.
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 556-570
-
-
Theodorescu, D.1
Schiffer, E.2
Bauer, H.W.3
Douwes, F.4
-
9
-
-
84875908330
-
Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation
-
Klein, J., Eales, J., Zurbig, P., Vlahou, A. et al., Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation. Proteomics 2013, 13, 1077-1082.
-
(2013)
Proteomics
, vol.13
, pp. 1077-1082
-
-
Klein, J.1
Eales, J.2
Zurbig, P.3
Vlahou, A.4
-
10
-
-
84865737357
-
Peptide identification by tandem mass spectrometry with alternate fragmentation modes
-
Guthals, A., Bandeira, N., Peptide identification by tandem mass spectrometry with alternate fragmentation modes. Mol. Cell Proteomics 2012, 11, 550-557.
-
(2012)
Mol. Cell Proteomics
, vol.11
, pp. 550-557
-
-
Guthals, A.1
Bandeira, N.2
-
11
-
-
84897410743
-
Comparison of CE-MS/MS and LC-MS/MS sequencing demonstrates significant complementarity in natural peptide identification in human urine
-
Klein, J., Papadopoulos, T., Mischak, H., Mullen, W., Comparison of CE-MS/MS and LC-MS/MS sequencing demonstrates significant complementarity in natural peptide identification in human urine. Electrophoresis 2014, 35, 1060-1064.
-
(2014)
Electrophoresis
, vol.35
, pp. 1060-1064
-
-
Klein, J.1
Papadopoulos, T.2
Mischak, H.3
Mullen, W.4
-
12
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen, J. V., Ong, S. E., Mann, M., Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol. Cell Proteomics 2004, 3, 608-614.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.E.2
Mann, M.3
-
13
-
-
84890101156
-
A novel electrochemical method for efficient reduction of disulfide bonds in peptides and proteins prior to MS detection
-
Kraj, A., Brouwer, H. J., Reinhoud, N., Chervet, J. P., A novel electrochemical method for efficient reduction of disulfide bonds in peptides and proteins prior to MS detection. Anal. Bioanal. Chem. 2013, 405, 9311-9320.
-
(2013)
Anal. Bioanal. Chem.
, vol.405
, pp. 9311-9320
-
-
Kraj, A.1
Brouwer, H.J.2
Reinhoud, N.3
Chervet, J.P.4
-
14
-
-
54549103296
-
Fragmentation of intra-peptide and inter-peptide disulfide bonds of proteolytic peptides by nanoESI collision-induced dissociation
-
Mormann, M., Eble, J., Schwoppe, C., Mesters, R. M. et al., Fragmentation of intra-peptide and inter-peptide disulfide bonds of proteolytic peptides by nanoESI collision-induced dissociation. Anal. Bioanal. Chem. 2008, 392, 831-838.
-
(2008)
Anal. Bioanal. Chem.
, vol.392
, pp. 831-838
-
-
Mormann, M.1
Eble, J.2
Schwoppe, C.3
Mesters, R.M.4
-
15
-
-
70349157281
-
Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures
-
Second, T. P., Blethrow, J. D., Schwartz, J. C., Merrihew, G. E. et al., Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. Anal. Chem. 2009, 81, 7757-7765.
-
(2009)
Anal. Chem.
, vol.81
, pp. 7757-7765
-
-
Second, T.P.1
Blethrow, J.D.2
Schwartz, J.C.3
Merrihew, G.E.4
-
16
-
-
84863053378
-
Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information
-
Shen, Y., Tolic, N., Purvine, S. O., Smith, R. D., Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information. J. Proteome. Res. 2012, 11, 668-677.
-
(2012)
J. Proteome. Res.
, vol.11
, pp. 668-677
-
-
Shen, Y.1
Tolic, N.2
Purvine, S.O.3
Smith, R.D.4
-
17
-
-
83055182135
-
Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics
-
Jedrychowski, M. P., Huttlin, E. L., Haas, W., Sowa, M. E. et al., Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics. Mol. Cell Proteomics 2011, 10, M111.
-
(2011)
Mol. Cell Proteomics
, vol.10
, pp. M111
-
-
Jedrychowski, M.P.1
Huttlin, E.L.2
Haas, W.3
Sowa, M.E.4
-
18
-
-
75149144996
-
A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
-
Olsen, J. V., Schwartz, J. C., Griep-Raming, J., Nielsen, M. L. et al., A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Mol. Cell Proteomics 2009, 8, 2759-2769.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 2759-2769
-
-
Olsen, J.V.1
Schwartz, J.C.2
Griep-Raming, J.3
Nielsen, M.L.4
-
19
-
-
55849104839
-
Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications
-
Wiesner, J., Premsler, T., Sickmann, A., Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications. Proteomics 2008, 8, 4466-4483.
-
(2008)
Proteomics
, vol.8
, pp. 4466-4483
-
-
Wiesner, J.1
Premsler, T.2
Sickmann, A.3
-
20
-
-
79955831978
-
Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos
-
Frese, C. K., Altelaar, A. F., Hennrich, M. L., Nolting, D. et al., Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos. J. Proteome. Res. 2011, 10, 2377-2388.
-
(2011)
J. Proteome. Res.
, vol.10
, pp. 2377-2388
-
-
Frese, C.K.1
Altelaar, A.F.2
Hennrich, M.L.3
Nolting, D.4
-
21
-
-
34548336772
-
Higher-energy C-trap dissociation for peptide modification analysis
-
Olsen, J. V., Macek, B., Lange, O., Makarov, A. et al., Higher-energy C-trap dissociation for peptide modification analysis. Nat. Methods 2007, 4, 709-712.
-
(2007)
Nat. Methods
, vol.4
, pp. 709-712
-
-
Olsen, J.V.1
Macek, B.2
Lange, O.3
Makarov, A.4
-
22
-
-
77952048255
-
pNovo: de novo peptide sequencing and identification using HCD spectra
-
Chi, H., Sun, R. X., Yang, B., Song, C. Q. et al., pNovo: de novo peptide sequencing and identification using HCD spectra. J. Proteome Res. 2010, 9, 2713-2724.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 2713-2724
-
-
Chi, H.1
Sun, R.X.2
Yang, B.3
Song, C.Q.4
-
23
-
-
70349974261
-
High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: a new mass spectrometric method combining the benefits of all
-
Kocher, T., Pichler, P., Schutzbier, M., Stingl, C. et al., High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: a new mass spectrometric method combining the benefits of all. J. Proteome Res. 2009, 8, 4743-4752.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4743-4752
-
-
Kocher, T.1
Pichler, P.2
Schutzbier, M.3
Stingl, C.4
-
24
-
-
84903636844
-
Recent developments and applications of electron transfer dissociation mass spectrometry in proteomics
-
Sarbu, M., Ghiulai, R. M., Zamfir, A. D., Recent developments and applications of electron transfer dissociation mass spectrometry in proteomics. Amino Acids 2014, 46, 1625-1634.
-
(2014)
Amino Acids
, vol.46
, pp. 1625-1634
-
-
Sarbu, M.1
Ghiulai, R.M.2
Zamfir, A.D.3
-
25
-
-
84897410743
-
Comparison of CE-MS/MS and LC-MS/MS sequencing demonstrates significant complementarity in natural peptide identification
-
Klein J., Papadopoulos, T., Mischak, H., Mullen, W., Comparison of CE-MS/MS and LC-MS/MS sequencing demonstrates significant complementarity in natural peptide identification. Electrophoresis 2014, 35, 1060-1064.
-
(2014)
Electrophoresis
, vol.35
, pp. 1060-1064
-
-
Klein, J.1
Papadopoulos, T.2
Mischak, H.3
Mullen, W.4
-
26
-
-
71049165855
-
Identification and validation of urinary biomarkers for differential diagnosis and dvaluation of therapeutic intervention in ANCA associated vasculitis
-
Haubitz, M., Good, D. M., Woywodt, A., Haller H et al., Identification and validation of urinary biomarkers for differential diagnosis and dvaluation of therapeutic intervention in ANCA associated vasculitis. Mol. Cell. Proteomics 2009, 8, 2296-2307.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2296-2307
-
-
Haubitz, M.1
Good, D.M.2
Woywodt, A.3
Haller, H.4
-
27
-
-
60849087391
-
Quantitative urinary proteome analysis for biomarker evaluation in chronic kidney disease
-
Jantos-Siwy, J., Schiffer, E., Brand, K., Schumann, G. et al., Quantitative urinary proteome analysis for biomarker evaluation in chronic kidney disease. J. Proteome Res. 2009, 8, 268-281.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 268-281
-
-
Jantos-Siwy, J.1
Schiffer, E.2
Brand, K.3
Schumann, G.4
-
28
-
-
67449143228
-
Identification of a unique urinary biomarker profile in patients with autosomal dominant polycystic kidney disease
-
Kistler, A. D., Mischak, H., Poster, D., Dakna, M. et al., Identification of a unique urinary biomarker profile in patients with autosomal dominant polycystic kidney disease. Kidney Int. 2009, 76, 89-96.
-
(2009)
Kidney Int
, vol.76
, pp. 89-96
-
-
Kistler, A.D.1
Mischak, H.2
Poster, D.3
Dakna, M.4
-
29
-
-
70349758752
-
Capillary electrophoresis coupled to mass spectrometry for proteomic profiling of human urine and biomarker discovery
-
Zürbig, P., Schiffer, E., Mischak, H., Capillary electrophoresis coupled to mass spectrometry for proteomic profiling of human urine and biomarker discovery. Methods Mol. Biol. 2009, 564, 105-121.
-
(2009)
Methods Mol. Biol.
, vol.564
, pp. 105-121
-
-
Zürbig, P.1
Schiffer, E.2
Mischak, H.3
-
30
-
-
0033861403
-
Relationship between the occurrence of cysteine in proteins and the complexity of organisms
-
Miseta, A., Csutora, P., Relationship between the occurrence of cysteine in proteins and the complexity of organisms. Mol. Biol. Evol. 2000, 17, 1232-1239.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1232-1239
-
-
Miseta, A.1
Csutora, P.2
-
31
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A., Nesvizhskii, A. I., Kolker, E., Aebersold, R., Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 2002, 74, 5383-5392.
-
(2002)
Anal. Chem.
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
32
-
-
79957592170
-
Human urinary peptide database for multiple disease biomarker discovery
-
Siwy, J., Mullen, W., Golovko, I., Franke, J., Zürbig, P., Human urinary peptide database for multiple disease biomarker discovery. Proteomics Clin. Appl. 2011, 5, 367-374.
-
(2011)
Proteomics Clin. Appl
, vol.5
, pp. 367-374
-
-
Siwy, J.1
Mullen, W.2
Golovko, I.3
Franke, J.4
Zürbig, P.5
-
33
-
-
35649024481
-
High-resolution proteome/peptidome analysis of peptides and low-molecular-weight proteins in urine
-
Mischak, H., Julian, B. A., Novak, J., High-resolution proteome/peptidome analysis of peptides and low-molecular-weight proteins in urine. Proteomics Clin. Appl. 2007, 1, 792-804.
-
(2007)
Proteomics Clin. Appl.
, vol.1
, pp. 792-804
-
-
Mischak, H.1
Julian, B.A.2
Novak, J.3
-
34
-
-
33745005452
-
Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer
-
Zheng, X., Baker, H., Hancock, W. S., Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer. J. Chromatogr. A 2006, 1120, 173-184.
-
(2006)
J. Chromatogr. A
, vol.1120
, pp. 173-184
-
-
Zheng, X.1
Baker, H.2
Hancock, W.S.3
-
35
-
-
84900990297
-
Analysis of the human urine endogenous peptides by nanoparticle extraction and mass spectrometry identification
-
Yang, X., Hu, L., Ye, M., Zou, H., Analysis of the human urine endogenous peptides by nanoparticle extraction and mass spectrometry identification. Anal. Chim. Acta 2014, 829, 40-47.
-
(2014)
Anal. Chim. Acta
, vol.829
, pp. 40-47
-
-
Yang, X.1
Hu, L.2
Ye, M.3
Zou, H.4
-
36
-
-
57449099068
-
Precision proteomics: the case for high resolution and high mass accuracy
-
Mann, M., Kelleher, N. L., Precision proteomics: the case for high resolution and high mass accuracy. Proc. Natl. Acad. Sci. USA 2008, 105, 18132-18138.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 18132-18138
-
-
Mann, M.1
Kelleher, N.L.2
-
37
-
-
84873370176
-
Computational approaches to protein inference in shotgun proteomics
-
Li, Y. F., Radivojac, P., Computational approaches to protein inference in shotgun proteomics. BMC Bioinformatics 2012, 13, S4.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S4
-
-
Li, Y.F.1
Radivojac, P.2
-
38
-
-
84878045698
-
False discovery rates in spectral identification
-
Jeong, K., Kim, S., Bandeira, N., False discovery rates in spectral identification. BMC Bioinformatics 2012, 13, S2.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S2
-
-
Jeong, K.1
Kim, S.2
Bandeira, N.3
-
39
-
-
20144383119
-
High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry
-
Zhang, H., Yi, E. C., Li, X. J., Mallick, P. et al., High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Mol. Cell Proteomics 2005, 4, 144-155.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 144-155
-
-
Zhang, H.1
Yi, E.C.2
Li, X.J.3
Mallick, P.4
-
40
-
-
79952200357
-
Distributions of ion series in ETD and CID spectra: making a comparison
-
Hart, S. R., Lau, K. W., Gaskell, S. J., Hubbard, S. J., Distributions of ion series in ETD and CID spectra: making a comparison. Methods Mol. Biol. 2011, 696, 327-337.
-
(2011)
Methods Mol. Biol.
, vol.696
, pp. 327-337
-
-
Hart, S.R.1
Lau, K.W.2
Gaskell, S.J.3
Hubbard, S.J.4
-
41
-
-
78650147228
-
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search
-
Kim, S., Mischerikow, N., Bandeira, N., Navarro, J. D. et al., The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search. Mol. Cell Proteomics 2010, 9, 2840-2852.
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 2840-2852
-
-
Kim, S.1
Mischerikow, N.2
Bandeira, N.3
Navarro, J.D.4
-
42
-
-
46849098407
-
Comprehensive comparison of collision induced dissociation and electron transfer dissociation
-
Molina, H., Matthiesen, R., Kandasamy, K., Pandey, A., Comprehensive comparison of collision induced dissociation and electron transfer dissociation. Anal. Chem. 2008, 80, 4825-4835.
-
(2008)
Anal. Chem.
, vol.80
, pp. 4825-4835
-
-
Molina, H.1
Matthiesen, R.2
Kandasamy, K.3
Pandey, A.4
-
43
-
-
78649849874
-
Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation
-
Nagaraj, N., D'Souza, R. C., Cox, J., Olsen, J. V., Mann, M., Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation. J. Proteome Res. 2010, 9, 6786-6794.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 6786-6794
-
-
Nagaraj, N.1
D'Souza, R.C.2
Cox, J.3
Olsen, J.V.4
Mann, M.5
-
44
-
-
6944233454
-
Ion activation methods for tandem mass spectrometry
-
Sleno, L., Volmer, D. A., Ion activation methods for tandem mass spectrometry. J. Mass Spectrom. 2004, 39, 1091-1112.
-
(2004)
J. Mass Spectrom
, vol.39
, pp. 1091-1112
-
-
Sleno, L.1
Volmer, D.A.2
|