메뉴 건너뛰기




Volumn 11, Issue 5, 2015, Pages

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME; 3' UNTRANSLATED REGION;

EID: 84930815144     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1005184     Document Type: Article
Times cited : (75)

References (84)
  • 1
    • 84894565411 scopus 로고    scopus 로고
    • Futuyma D, Evolution. Third Edit. Sinauer Associates, Inc. 2013; p. 656.
    • (2013) Evolution , pp. 656
    • Futuyma, D.1
  • 2
    • 0016110338 scopus 로고
    • Three flies and three islands: parallel evolution in Drosophila
    • Carson HL, Three flies and three islands: parallel evolution in Drosophila. Proc Natl Acad Sci U S A. 1974;71: 3517–3521. 4530320
    • (1974) Proc Natl Acad Sci U S A , vol.71 , pp. 3517-3521
    • Carson, H.L.1
  • 3
    • 0021607982 scopus 로고
    • Parallel geographical patterns of allozyme variation in two sibling Drosophila species
    • Anderson PR, Oakeshott JG, Parallel geographical patterns of allozyme variation in two sibling Drosophila species. Nature. 1984;308: 729–731
    • (1984) Nature , vol.308 , pp. 729-731
    • Anderson, P.R.1    Oakeshott, J.G.2
  • 4
    • 0038517876 scopus 로고    scopus 로고
    • Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism
    • Sucena E, Delon I, Jones I, Payre F, Stern DL, Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism. Nature. 2003;424: 935–938. 12931187
    • (2003) Nature , vol.424 , pp. 935-938
    • Sucena, E.1    Delon, I.2    Jones, I.3    Payre, F.4    Stern, D.L.5
  • 5
    • 16344387924 scopus 로고    scopus 로고
    • Parallel genotypic adaptation: When evolution repeats itself
    • Wood TE, Burke JM, Rieseberg LH, Parallel genotypic adaptation: When evolution repeats itself. Genetica. 2005;123: 157–170. 15881688
    • (2005) Genetica , vol.123 , pp. 157-170
    • Wood, T.E.1    Burke, J.M.2    Rieseberg, L.H.3
  • 6
    • 34548694067 scopus 로고    scopus 로고
    • Adaptive variation in beach mice produced by two interacting pigmentation genes
    • Steiner CC, Weber JN, Hoekstra HE, Adaptive variation in beach mice produced by two interacting pigmentation genes. PLoS Biol. 2007;5: 1880–1889.
    • (2007) PLoS Biol , vol.5 , pp. 1880-1889
    • Steiner, C.C.1    Weber, J.N.2    Hoekstra, H.E.3
  • 7
    • 69549110251 scopus 로고    scopus 로고
    • On the origin and spread of an adaptive allele in deer mice
    • Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE, On the origin and spread of an adaptive allele in deer mice. Science. 2009;325: 1095–8. doi: 10.1126/science.1175826 19713521
    • (2009) Science , vol.325 , pp. 1095-1098
    • Linnen, C.R.1    Kingsley, E.P.2    Jensen, J.D.3    Hoekstra, H.E.4
  • 8
    • 76649130556 scopus 로고    scopus 로고
    • Molecular and functional basis of phenotypic convergence in white lizards at White Sands
    • Rosenblum EB, Römpler H, Schöneberg T, Hoekstra HE, Molecular and functional basis of phenotypic convergence in white lizards at White Sands. Proc Natl Acad Sci U S A. 2010;107: 2113–2117. doi: 10.1073/pnas.0911042107 20080544
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 2113-2117
    • Rosenblum, E.B.1    Römpler, H.2    Schöneberg, T.3    Hoekstra, H.E.4
  • 9
    • 0029858124 scopus 로고    scopus 로고
    • Parallel rise and fall of melanic peppered moths in America and Britain
    • Grant BS, Owen DF, Clarke CA, Parallel rise and fall of melanic peppered moths in America and Britain. J Hered. 1996;87: 351–357.
    • (1996) J Hered , vol.87 , pp. 351-357
    • Grant, B.S.1    Owen, D.F.2    Clarke, C.A.3
  • 10
    • 73349101520 scopus 로고    scopus 로고
    • Regressive evolution in Astyanax cavefish
    • Jeffery WR, Regressive evolution in Astyanax cavefish. Annu Rev Genet. 2009;43: 25–47. doi: 10.1146/annurev-genet-102108-134216 19640230
    • (2009) Annu Rev Genet , vol.43 , pp. 25-47
    • Jeffery, W.R.1
  • 11
    • 0023998356 scopus 로고
    • Genetic variation of Drosophila melanogaster natural populations
    • David J, Capy P, Genetic variation of Drosophila melanogaster natural populations. Trends Genet. 1988;4:106–111. 3149056
    • (1988) Trends Genet , vol.4 , pp. 106-111
    • David, J.1    Capy, P.2
  • 12
    • 0027040730 scopus 로고
    • Geographic variation in Drosophila: From molecules to morphology and back
    • Singh RS, Long AD, Geographic variation in Drosophila: From molecules to morphology and back. Trends Ecol Evol. 1992;7: 340–345. doi: 10.1016/0169-5347(92)90127-W 21236059
    • (1992) Trends Ecol Evol , vol.7 , pp. 340-345
    • Singh, R.S.1    Long, A.D.2
  • 13
    • 15944388815 scopus 로고    scopus 로고
    • Relative importance of plastic vs genetic factors in adaptive differentiation: Geographical variation for stress resistance in Drosophila melanogaster from eastern Australia
    • Hoffmann AA, Shirriffs J, Scott M, Relative importance of plastic vs genetic factors in adaptive differentiation: Geographical variation for stress resistance in Drosophila melanogaster from eastern Australia. Funct Ecol. 2005;19: 222–227.
    • (2005) Funct Ecol , vol.19 , pp. 222-227
    • Hoffmann, A.A.1    Shirriffs, J.2    Scott, M.3
  • 14
    • 84867096797 scopus 로고    scopus 로고
    • Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America
    • Fabian DK, Kapun M, Nolte V, Kofler R, Schmidt PS, Schlötterer C, et al. Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America. Mol Ecol. 2012;21: 4748–4769. doi: 10.1111/j.1365-294X.2012.05731.x 22913798
    • (2012) Mol Ecol , vol.21 , pp. 4748-4769
    • Fabian, D.K.1    Kapun, M.2    Nolte, V.3    Kofler, R.4    Schmidt, P.S.5    Schlötterer, C.6
  • 16
    • 33846610647 scopus 로고    scopus 로고
    • Drosophila melanogaster’s history as a human commensal
    • Keller A, Drosophila melanogaster’s history as a human commensal. Curr Biol. 2007; 17: R77–81. 17276902
    • (2007) Curr Biol , vol.17 , pp. 77-81
    • Keller, A.1
  • 17
    • 33846589670 scopus 로고    scopus 로고
    • The recent demographic and adaptive history of Drosophila melanogaster
    • Stephan W, Li H, The recent demographic and adaptive history of Drosophila melanogaster. Heredity. 2007;98: 65–68. 17006533
    • (2007) Heredity , vol.98 , pp. 65-68
    • Stephan, W.1    Li, H.2
  • 18
    • 84871785145 scopus 로고    scopus 로고
    • Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population
    • Duchen P, Zivkovic D, Hutter S, Stephan W, Laurent S, Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population. Genetics. 2013;193: 291–301. doi: 10.1534/genetics.112.145912 23150605
    • (2013) Genetics , vol.193 , pp. 291-301
    • Duchen, P.1    Zivkovic, D.2    Hutter, S.3    Stephan, W.4    Laurent, S.5
  • 19
    • 3843103748 scopus 로고    scopus 로고
    • Linking phylogenetics with population genetics to reconstruct the geographic origin of a species
    • Dean MD, Ballard JWO, Linking phylogenetics with population genetics to reconstruct the geographic origin of a species. Mol Phylogenet Evol. 2004;32: 998–1009. 15288072
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 998-1009
    • Dean, M.D.1    Ballard, J.W.O.2
  • 20
    • 0024058618 scopus 로고
    • The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence
    • Aquadro CF, Lado KM, Noon WA, The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence. Genetics. 1988;119: 875–88. 2900794
    • (1988) Genetics , vol.119 , pp. 875-888
    • Aquadro, C.F.1    Lado, K.M.2    Noon, W.A.3
  • 21
    • 34250748633 scopus 로고    scopus 로고
    • Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade
    • Begun DJ, Lindfors HA, Kern AD, Jones CD, Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade. Genetics. 2007;176: 1131–1137. 17435230
    • (2007) Genetics , vol.176 , pp. 1131-1137
    • Begun, D.J.1    Lindfors, H.A.2    Kern, A.D.3    Jones, C.D.4
  • 22
    • 0020327857 scopus 로고
    • Chromosome inversion polymorphisms in Drosophila melanogaster II. Geographic clines and climatic associations in Australasia, North America and Asia
    • Knibb WR, Chromosome inversion polymorphisms in Drosophila melanogaster II. Geographic clines and climatic associations in Australasia, North America and Asia. Genetica. 1982;58: 213–221.
    • (1982) Genetica , vol.58 , pp. 213-221
    • Knibb, W.R.1
  • 23
    • 52049084856 scopus 로고    scopus 로고
    • Genomic analysis of adaptive differentiation in Drosophila melanogaster
    • Turner TL, Levine MT, Eckert ML, Begun DJ, Genomic analysis of adaptive differentiation in Drosophila melanogaster. Genetics. 2008;179: 455–473. doi: 10.1534/genetics.107.083659 18493064
    • (2008) Genetics , vol.179 , pp. 455-473
    • Turner, T.L.1    Levine, M.T.2    Eckert, M.L.3    Begun, D.J.4
  • 24
    • 0016850594 scopus 로고
    • Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). I. Inversion polymorphisms in Drosophila melanogaster and Drosophila simulans
    • Ashburner M, Lemeunier F, Relationships within the melanogaster species subgroup of the genus Drosophila (Sophophora). I. Inversion polymorphisms in Drosophila melanogaster and Drosophila simulans. Proc R Soc B Biol Sci. 1976;193: 137–157. 5729
    • (1976) Proc R Soc B Biol Sci , vol.193 , pp. 137-157
    • Ashburner, M.1    Lemeunier, F.2
  • 25
    • 0023283959 scopus 로고
    • Contrasting patterns of geographic variation in the cosmopolitan sibling species Drosophila melanogaster and Drosophila simulans
    • Singh RS, Choudhary M, David JR, Contrasting patterns of geographic variation in the cosmopolitan sibling species Drosophila melanogaster and Drosophila simulans. Biochem Genet. 1987;25: 27–40. 3107542
    • (1987) Biochem Genet , vol.25 , pp. 27-40
    • Singh, R.S.1    Choudhary, M.2    David, J.R.3
  • 26
    • 0024788776 scopus 로고
    • Population genetics and evolution of species related to Drosophila melanogaster
    • Singh RS, Population genetics and evolution of species related to Drosophila melanogaster. Annu Rev Genet. 1989;23: 425–53. 2515792
    • (1989) Annu Rev Genet , vol.23 , pp. 425-453
    • Singh, R.S.1
  • 27
    • 54049103315 scopus 로고    scopus 로고
    • Investigating latitudinal clines for life history and stress resistance traits in Drosophila simulans from eastern Australia
    • Arthur AL, Weeks AR, Sgrò CM, Investigating latitudinal clines for life history and stress resistance traits in Drosophila simulans from eastern Australia. J Evol Biol. 2008;21: 1470–1479. doi: 10.1111/j.1420-9101.2008.01617.x 18811666
    • (2008) J Evol Biol , vol.21 , pp. 1470-1479
    • Arthur, A.L.1    Weeks, A.R.2    Sgrò, C.M.3
  • 28
    • 0034977946 scopus 로고    scopus 로고
    • Chill-coma tolerance, a major climatic adaptation among Drosophila species
    • Gibert P, Moreteau B, Pétavy G, Karan D, David JR, Chill-coma tolerance, a major climatic adaptation among Drosophila species. Evolution. 2001;55: 1063–1068. 11430643
    • (2001) Evolution , vol.55 , pp. 1063-1068
    • Gibert, P.1    Moreteau, B.2    Pétavy, G.3    Karan, D.4    David, J.R.5
  • 29
    • 0028426870 scopus 로고
    • Variation in wing length in Eurasian natural populations of Drosophila melanogaster
    • Imasheva AG, Bubli OA, Lazebny OE, Variation in wing length in Eurasian natural populations of Drosophila melanogaster. Heredity. 1994;72: 508–514. 8014061
    • (1994) Heredity , vol.72 , pp. 508-514
    • Imasheva, A.G.1    Bubli, O.A.2    Lazebny, O.E.3
  • 30
    • 0029053854 scopus 로고
    • Cellular basis and developmental timing in a size cline of Drosophila melanogaster
    • James AC, Azevedo RB, Partridge L, Cellular basis and developmental timing in a size cline of Drosophila melanogaster. Genetics. 1995;140: 659–666. 7498744
    • (1995) Genetics , vol.140 , pp. 659-666
    • James, A.C.1    Azevedo, R.B.2    Partridge, L.3
  • 31
    • 2442739337 scopus 로고    scopus 로고
    • Latitudinal variation in wild populations of Drosophila melanogaster: heritabilities and reaction norms
    • van’t Land J, van Putten P, Zwaan B, Kamping A, van Delden W, Latitudinal variation in wild populations of Drosophila melanogaster: heritabilities and reaction norms. J Evol Biol. 1999;12: 222–232.
    • (1999) J Evol Biol , vol.12 , pp. 222-232
    • van’t Land, J.1    van Putten, P.2    Zwaan, B.3    Kamping, A.4    van Delden, W.5
  • 32
    • 0345094915 scopus 로고    scopus 로고
    • QTL mapping reveals a striking coincidence in the positions of genomic regions associated with adaptive variation in body size in parallel clines of Drosophila melanogaster on different continents
    • Calboli FCF, Kennington WJ, Partridge L, QTL mapping reveals a striking coincidence in the positions of genomic regions associated with adaptive variation in body size in parallel clines of Drosophila melanogaster on different continents. Evolution. 2003;57: 2653. 14686541
    • (2003) Evolution , vol.57 , pp. 2653
    • Calboli, F.C.F.1    Kennington, W.J.2    Partridge, L.3
  • 33
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4: 44–57. doi: 10.1038/nprot.2008.211 19131956
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 34
    • 12344269924 scopus 로고    scopus 로고
    • GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • Boyle EI, Weng S, Gollub J, Jin H, Botstein D, GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics. 2004;20: 3710–5. 15297299
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5
  • 35
    • 67349156693 scopus 로고    scopus 로고
    • Selection for cold resistance alters gene transcript levels in Drosophila melanogaster
    • Telonis-Scott M, Hallas R, McKechnie SW, Wee CW, Hoffmann AA, Selection for cold resistance alters gene transcript levels in Drosophila melanogaster. J Insect Physiol. 2009;55: 549–555. doi: 10.1016/j.jinsphys.2009.01.010 19232407
    • (2009) J Insect Physiol , vol.55 , pp. 549-555
    • Telonis-Scott, M.1    Hallas, R.2    McKechnie, S.W.3    Wee, C.W.4    Hoffmann, A.A.5
  • 36
    • 46249106059 scopus 로고    scopus 로고
    • Gene expression variation in African and European populations of Drosophila melanogaster
    • Hutter S, Saminadin-Peter SS, Stephan W, Parsch J, Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biol. 2008;9: R12. doi: 10.1186/gb-2008-9-1-r12 18208589
    • (2008) Genome Biol , vol.9 , pp. R12
    • Hutter, S.1    Saminadin-Peter, S.S.2    Stephan, W.3    Parsch, J.4
  • 37
    • 84964315963 scopus 로고    scopus 로고
    • Population- and Sex-Biased Gene Expression in the excretion organs of Drosophila melanogaster
    • Huylmans AK, Parsch J, Population- and Sex-Biased Gene Expression in the excretion organs of Drosophila melanogaster. G3 (Bethesda). 2014;4:2307–15. doi: 10.1534/g3.114.013417 25246242
    • (2014) G3 (Bethesda) , vol.4 , pp. 2307-2315
    • Huylmans, A.K.1    Parsch, J.2
  • 38
    • 33644875032 scopus 로고    scopus 로고
    • The TRP superfamily of cation channels
    • Montell C, The TRP superfamily of cation channels. Sci STKE. 2005;2005: re3. 15728426
    • (2005) Sci STKE , vol.2005 , pp. re3
    • Montell, C.1
  • 39
    • 84859718531 scopus 로고    scopus 로고
    • Genome-wide transcription analysis of clinal genetic variation in Drosophila
    • Chen Y, Lee SF, Blanc E, Reuter C, Wertheim B, Martinez-Diaz P, et al. Genome-wide transcription analysis of clinal genetic variation in Drosophila. PLoS One. 2012;7: e34620. doi: 10.1371/journal.pone.0034620 22514645
    • (2012) PLoS One , vol.7 , pp. e34620
    • Chen, Y.1    Lee, S.F.2    Blanc, E.3    Reuter, C.4    Wertheim, B.5    Martinez-Diaz, P.6
  • 40
    • 20144376345 scopus 로고    scopus 로고
    • Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
    • Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, et al. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics. 2005;21: 650–659. 15388519
    • (2005) Bioinformatics , vol.21 , pp. 650-659
    • Yanai, I.1    Benjamin, H.2    Shmoish, M.3    Chalifa-Caspi, V.4    Shklar, M.5    Ophir, R.6
  • 41
    • 84893906285 scopus 로고    scopus 로고
    • Origin and spread of de novo genes in Drosophila melanogaster populations
    • Zhao L, Saelao P, Jones CD, Begun DJ, Origin and spread of de novo genes in Drosophila melanogaster populations. Science. 2014;343: 769–772. doi: 10.1126/science.1248286 24457212
    • (2014) Science , vol.343 , pp. 769-772
    • Zhao, L.1    Saelao, P.2    Jones, C.D.3    Begun, D.J.4
  • 42
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease
    • Chintapalli VR, Wang J, Dow JA, Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat Genet. 2007;39: 715–720. 17534367
    • (2007) Nat Genet , vol.39 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.3
  • 43
    • 4844222675 scopus 로고    scopus 로고
    • A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
    • Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lü J, et al. A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biol. 2004;5: R40. 15186491
    • (2004) Genome Biol , vol.5 , pp. R40
    • Parisi, M.1    Nuttall, R.2    Edwards, P.3    Minor, J.4    Naiman, D.5    Lü, J.6
  • 46
    • 79960559081 scopus 로고    scopus 로고
    • Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing
    • Chang PL, Dunham JP, Nuzhdin S V, Arbeitman MN, Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing. BMC Genomics. 2011;12: 364. doi: 10.1186/1471-2164-12-364 21756339
    • (2011) BMC Genomics , vol.12 , pp. 364
    • Chang, P.L.1    Dunham, J.P.2    Nuzhdin S, V.3    Arbeitman, M.N.4
  • 47
    • 0017806202 scopus 로고
    • Inversions fail to account for allozyme clines
    • Voelker RA, Cockerham CC, Johnson FM, Inversions fail to account for allozyme clines. Genetics. 1978;88:515–527. 17248810
    • (1978) Genetics , vol.88 , pp. 515-527
    • Voelker, R.A.1    Cockerham, C.C.2    Johnson, F.M.3
  • 48
    • 84896912463 scopus 로고    scopus 로고
    • Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster
    • Kapun M, Van Schalkwyk H, McAllister B, Flatt T, Schlötterer C, Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster. Mol Ecol. 2014;23: 1813–1827. doi: 10.1111/mec.12594 24372777
    • (2014) Mol Ecol , vol.23 , pp. 1813-1827
    • Kapun, M.1    Van Schalkwyk, H.2    McAllister, B.3    Flatt, T.4    Schlötterer, C.5
  • 50
    • 84870693546 scopus 로고    scopus 로고
    • Genomic variation and its impact on gene expression in Drosophila melanogaster
    • Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, et al. Genomic variation and its impact on gene expression in Drosophila melanogaster. PLoS Genet. 2012;8: e1003055. doi: 10.1371/journal.pgen.1003055 23189034
    • (2012) PLoS Genet , vol.8 , pp. e1003055
    • Massouras, A.1    Waszak, S.M.2    Albarca-Aguilera, M.3    Hens, K.4    Holcombe, W.5    Ayroles, J.F.6
  • 51
    • 78650467110 scopus 로고    scopus 로고
    • Whole-genome expression plasticity across tropical and temperate Drosophila melanogaster populations from Eastern Australia
    • Levine MT, Eckert ML, Begun DJ, Whole-genome expression plasticity across tropical and temperate Drosophila melanogaster populations from Eastern Australia. Mol Biol Evol. 2011;28: 249–56. doi: 10.1093/molbev/msq197 20671040
    • (2011) Mol Biol Evol , vol.28 , pp. 249-256
    • Levine, M.T.1    Eckert, M.L.2    Begun, D.J.3
  • 52
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • Wittkopp PJ, Haerum BK, Clark AG, Evolutionary changes in cis and trans gene regulation. Nature. 2004;430: 85–8. 15229602
    • (2004) Nature , vol.430 , pp. 85-88
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 53
    • 83855163414 scopus 로고    scopus 로고
    • Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence
    • Wittkopp PJ, Kalay G, Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Nat Rev Genet. 2012;13: 59–69. doi: 10.1038/nrg3095 22143240
    • (2012) Nat Rev Genet , vol.13 , pp. 59-69
    • Wittkopp, P.J.1    Kalay, G.2
  • 54
    • 84876855375 scopus 로고    scopus 로고
    • Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap
    • Gayral P, Melo-Ferreira J, Glémin S, Bierne N, Carneiro M, Nabholz B, et al. Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap. PLoS Genet. 2013;9: e1003457. doi: 10.1371/journal.pgen.1003457 23593039
    • (2013) PLoS Genet , vol.9 , pp. e1003457
    • Gayral, P.1    Melo-Ferreira, J.2    Glémin, S.3    Bierne, N.4    Carneiro, M.5    Nabholz, B.6
  • 55
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray GA, The evolutionary significance of cis-regulatory mutations. Nat Rev Genet. 2007;8: 206–216. 17304246
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 56
    • 84858379682 scopus 로고    scopus 로고
    • Selective sweep of a cis-regulatory sequence in a non-African population of Drosophila melanogaster
    • Saminadin-Peter SS, Kemkemer C, Pavlidis P, Parsch J, Selective sweep of a cis-regulatory sequence in a non-African population of Drosophila melanogaster. Mol Biol Evol. 2012;29: 1167–1174. doi: 10.1093/molbev/msr284 22101416
    • (2012) Mol Biol Evol , vol.29 , pp. 1167-1174
    • Saminadin-Peter, S.S.1    Kemkemer, C.2    Pavlidis, P.3    Parsch, J.4
  • 57
    • 84866081815 scopus 로고    scopus 로고
    • Genomic Variation in Natural Populations of Drosophila melanogaster
    • Langley CH, Stevens K, Cardeno C, Lee YCG, Schrider DR, Pool JE, et al. Genomic Variation in Natural Populations of Drosophila melanogaster. Genetics. 2012;192: 533–598. doi: 10.1534/genetics.112.142018 22673804
    • (2012) Genetics , vol.192 , pp. 533-598
    • Langley, C.H.1    Stevens, K.2    Cardeno, C.3    Lee, Y.C.G.4    Schrider, D.R.5    Pool, J.E.6
  • 59
    • 0042968976 scopus 로고    scopus 로고
    • The power of the 3’ UTR: translational control and development
    • Kuersten S, Goodwin EB, The power of the 3’ UTR: translational control and development. Nat Rev Genet. 2003;4: 626–637. 12897774
    • (2003) Nat Rev Genet , vol.4 , pp. 626-637
    • Kuersten, S.1    Goodwin, E.B.2
  • 60
    • 53249143880 scopus 로고    scopus 로고
    • 3′ UTRs Are the primary regulators of gene expression in the C. elegans germline
    • Merritt C, Rasoloson D, Ko D, Seydoux G, 3′ UTRs Are the primary regulators of gene expression in the C. elegans germline. Curr Biol. 2008;18: 1476–1482. doi: 10.1016/j.cub.2008.08.013 18818082
    • (2008) Curr Biol , vol.18 , pp. 1476-1482
    • Merritt, C.1    Rasoloson, D.2    Ko, D.3    Seydoux, G.4
  • 61
    • 35349001696 scopus 로고    scopus 로고
    • Which evolutionary processes influence natural genetic variation for phenotypic traits?
    • Mitchell-Olds T, Willis JH, Goldstein DB, Which evolutionary processes influence natural genetic variation for phenotypic traits? Nat Rev Genet. 2007;8: 845–856. 17943192
    • (2007) Nat Rev Genet , vol.8 , pp. 845-856
    • Mitchell-Olds, T.1    Willis, J.H.2    Goldstein, D.B.3
  • 62
    • 1842588977 scopus 로고    scopus 로고
    • Comparative analysis of morphological traits among Drosophila melanogaster and D. simulans: genetic variability, clines and phenotypic plasticity
    • Gibert P, Capy P, Imasheva A, Moreteau B, Morin JP, Petavy G, et al. Comparative analysis of morphological traits among Drosophila melanogaster and D. simulans: genetic variability, clines and phenotypic plasticity. Genetica. 2004;120: 165–179. 15088656
    • (2004) Genetica , vol.120 , pp. 165-179
    • Gibert, P.1    Capy, P.2    Imasheva, A.3    Moreteau, B.4    Morin, J.P.5    Petavy, G.6
  • 63
    • 33845976693 scopus 로고    scopus 로고
    • Mapping determinants of gene expression plasticity by genetical genomics in C. elegans
    • Li Y, Álvarez OA, Gutteling EW, Tijsterman M, Fu J, Riksen JAG, et al. Mapping determinants of gene expression plasticity by genetical genomics in C. elegans. PLoS Genet. 2006;2: 2155–2161.
    • (2006) PLoS Genet , vol.2 , pp. 2155-2161
    • Li, Y.1    Álvarez, O.A.2    Gutteling, E.W.3    Tijsterman, M.4    Fu, J.5    Riksen, J.A.G.6
  • 64
    • 84880950921 scopus 로고    scopus 로고
    • The genomic determinants of genotype X environment interactions in gene expression
    • Grishkevich V, Yanai I, The genomic determinants of genotype X environment interactions in gene expression. Trends in Genetics. 2013;8: 479–487. doi: 10.1016/j.tig.2013.05.006 23769209
    • (2013) Trends in Genetics , vol.8 , pp. 479-487
    • Grishkevich, V.1    Yanai, I.2
  • 65
    • 0001365140 scopus 로고
    • The influence of light on the matsping behavior of seven species of the Drosophila melanogaster species group
    • Spieth HT, Hsu TC, The influence of light on the matsping behavior of seven species of the Drosophila melanogaster species group. Evolution. 1950;4:316–325.
    • (1950) Evolution , vol.4 , pp. 316-325
    • Spieth, H.T.1    Hsu, T.C.2
  • 66
    • 84921473158 scopus 로고    scopus 로고
    • Temperature sensation in Drosophila
    • Barbagallo B, Garrity PA, Temperature sensation in Drosophila. Curr Opin Neurobiol. 2015;34C: 8–13. doi: 10.1016/j.conb.2015.01.002 25616212
    • (2015) Curr Opin Neurobiol , vol.34C , pp. 8-13
    • Barbagallo, B.1    Garrity, P.A.2
  • 67
    • 0033134937 scopus 로고    scopus 로고
    • Genetic dissection of behavior: modulation of locomotion by light in the Drosophila melanogaster larva requires genetically distinct visual system functions
    • Busto M, Iyengar B, Campos AR, Genetic dissection of behavior: modulation of locomotion by light in the Drosophila melanogaster larva requires genetically distinct visual system functions. J Neurosci. 1999;19: 3337–44. 10212293
    • (1999) J Neurosci , vol.19 , pp. 3337-3344
    • Busto, M.1    Iyengar, B.2    Campos, A.R.3
  • 68
    • 84867404270 scopus 로고    scopus 로고
    • Circadian rhythm of temperature preference and its neural control in Drosophila
    • Kaneko H, Head LM, Ling J, Tang X, Liu Y, Hardin PE, et al. Circadian rhythm of temperature preference and its neural control in Drosophila. Curr Biol. 2012;22: 1851–7. doi: 10.1016/j.cub.2012.08.006 22981774
    • (2012) Curr Biol , vol.22 , pp. 1851-1857
    • Kaneko, H.1    Head, L.M.2    Ling, J.3    Tang, X.4    Liu, Y.5    Hardin, P.E.6
  • 70
    • 0023759613 scopus 로고
    • Low retinal noise in animals with low body temperature allows high visual sensitivity
    • Aho AC, Donner K, Hydén C, Larsen LO, Reuter T, Low retinal noise in animals with low body temperature allows high visual sensitivity. Nature. 1988;334: 348–50. 3134619
    • (1988) Nature , vol.334 , pp. 348-350
    • Aho, A.C.1    Donner, K.2    Hydén, C.3    Larsen, L.O.4    Reuter, T.5
  • 71
    • 0035171607 scopus 로고    scopus 로고
    • Light adaptation in Drosophila photoreceptors: II. Rising temperature increases the bandwidth of reliable signaling
    • Juusola M, Hardie RC, Light adaptation in Drosophila photoreceptors: II. Rising temperature increases the bandwidth of reliable signaling. J Gen Physiol. 2001;117: 27–42. 11134229
    • (2001) J Gen Physiol , vol.117 , pp. 27-42
    • Juusola, M.1    Hardie, R.C.2
  • 72
    • 84903710173 scopus 로고    scopus 로고
    • Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans
    • Rogers RL, Cridland JM, Shao L, Hu TT, Andolfatto P, Thornton KR, Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans. Mol Biol Evol. 2014;31: 1750–1766. doi: 10.1093/molbev/msu124 24710518
    • (2014) Mol Biol Evol , vol.31 , pp. 1750-1766
    • Rogers, R.L.1    Cridland, J.M.2    Shao, L.3    Hu, T.T.4    Andolfatto, P.5    Thornton, K.R.6
  • 73
    • 1842484067 scopus 로고    scopus 로고
    • Comparative life histories and ecophysiology of Drosophila melanogaster and D. simulans
    • David JR, Allemand R, Capy P, Chakir M, Gibert P, Pétavy G, et al. Comparative life histories and ecophysiology of Drosophila melanogaster and D. simulans. Genetica. 2004;120: 151–163. 15088655
    • (2004) Genetica , vol.120 , pp. 151-163
    • David, J.R.1    Allemand, R.2    Capy, P.3    Chakir, M.4    Gibert, P.5    Pétavy, G.6
  • 74
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL, TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25: 1105–1111. doi: 10.1093/bioinformatics/btp120 19289445
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 75
    • 84871958299 scopus 로고    scopus 로고
    • A second generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
    • Hu TT, Eisen MB, Thornton KR, Andolfatto P, A second generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res. 2013;23: 89–98. doi: 10.1101/gr.141689.112 22936249
    • (2013) Genome Res , vol.23 , pp. 89-98
    • Hu, T.T.1    Eisen, M.B.2    Thornton, K.R.3    Andolfatto, P.4
  • 76
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2
    • Love MI, Huber W, Anders S, Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2. Genome Biol. 2014;15:550. 25516281
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 77
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26: 139–140. doi: 10.1093/bioinformatics/btp616 19910308
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 78
    • 84888141396 scopus 로고    scopus 로고
    • Linear Models for Microarray Data User’ s Guide
    • Smyth GK, Ritchie M, Thorne N, Linear Models for Microarray Data User’ s Guide. Bioinformatics. 2011;20: 3705–3706.
    • (2011) Bioinformatics , vol.20 , pp. 3705-3706
    • Smyth, G.K.1    Ritchie, M.2    Thorne, N.3
  • 79
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y, Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B. 1995;57: 289–300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 80
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28: 516–520. doi: 10.1038/nbt.1626 20436463
    • (2010) Nat Biotechnol , vol.28 , pp. 516-520
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    van Baren, M.J.6
  • 81
    • 57149102681 scopus 로고    scopus 로고
    • Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
    • Tang H, Wang XX, Bowers JE, Ming R, Alam M, Paterson AH, et al. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res. 2008;18: 1944–1954. doi: 10.1101/gr.080978.108 18832442
    • (2008) Genome Res , vol.18 , pp. 1944-1954
    • Tang, H.1    Wang, X.X.2    Bowers, J.E.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 82
    • 84872022907 scopus 로고    scopus 로고
    • Population genomics of inversion polymorphisms in Drosophila melanogaster
    • Corbett-Detig RB, Hartl DL, Population genomics of inversion polymorphisms in Drosophila melanogaster. PLoS Genet. 2012;8: e1003056. doi: 10.1371/journal.pgen.1003056 23284285
    • (2012) PLoS Genet , vol.8 , pp. e1003056
    • Corbett-Detig, R.B.1    Hartl, D.L.2
  • 83
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25: 1754–1760. doi: 10.1093/bioinformatics/btp324 19451168
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 84
    • 83355175374 scopus 로고    scopus 로고
    • PoPoolation2: Identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
    • Kofler R, Pandey RV, Schlötterer C, PoPoolation2: Identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics. 2011;27: 3435–3436. doi: 10.1093/bioinformatics/btr589 22025480
    • (2011) Bioinformatics , vol.27 , pp. 3435-3436
    • Kofler, R.1    Pandey, R.V.2    Schlötterer, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.